Wall clock time and date at job start Tue Mar 31 2020 00:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00057 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21685 * 119.99775 * 359.97438 * 14 13 3 16 16 C 1.46766 * 119.99951 * 179.97438 * 14 13 3 17 17 C 1.41636 * 126.55349 * 359.68225 * 16 14 13 18 18 N 1.30457 * 108.22796 * 179.85663 * 17 16 14 19 19 N 1.39494 * 109.13945 * 0.41891 * 18 17 16 20 20 C 1.35126 * 108.56295 * 359.72288 * 19 18 17 21 21 N 1.37898 * 125.24164 * 180.02562 * 20 19 18 22 22 C 1.47081 * 110.74769 * 341.88858 * 21 20 19 23 23 C 1.53221 * 109.54840 * 50.58178 * 22 21 20 24 24 C 1.46864 * 127.34190 * 179.72723 * 19 18 17 25 25 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 26 26 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 28 28 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 29 29 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 30 30 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 32 32 H 1.07997 * 125.88269 * 359.97438 * 17 16 14 33 33 H 1.00905 * 110.99691 * 105.68020 * 21 20 19 34 34 H 1.08997 * 109.46327 * 290.55161 * 22 21 20 35 35 H 1.08997 * 109.43488 * 170.59108 * 22 21 20 36 36 H 1.09004 * 109.57595 * 172.87669 * 23 22 21 37 37 H 1.08996 * 109.68915 * 52.55433 * 23 22 21 38 38 H 1.09004 * 109.79869 * 284.35860 * 24 19 18 39 39 H 1.09007 * 109.79705 * 45.16142 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5548 -0.3504 -0.7599 11 1 6.3831 0.9222 -2.8171 12 1 6.5570 2.0736 -0.6899 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3418 2.6326 0.4309 16 6 0.0466 3.3202 2.6211 17 6 0.8337 3.4325 3.7933 18 7 0.1428 4.0839 4.6879 19 7 -1.1039 4.4106 4.1541 20 6 -1.1652 3.9438 2.8875 21 7 -2.2458 4.0783 2.0415 22 6 -3.4639 4.4022 2.7994 23 6 -3.1868 5.5837 3.7347 24 6 -2.1945 5.1366 4.8177 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8295 -0.0613 -2.9496 31 1 2.2719 2.1231 1.9978 32 1 1.8342 3.0471 3.9233 33 1 -2.0655 4.7730 1.3322 34 1 -3.7664 3.5362 3.3882 35 1 -4.2626 4.6670 2.1066 36 1 -4.1174 5.9054 4.2024 37 1 -2.7594 6.4097 3.1662 38 1 -2.6955 4.4804 5.5294 39 1 -1.7955 6.0082 5.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263775635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:06 Heat of formation + Delta-G solvation = 40.996670 kcal Electronic energy + Delta-G solvation = -22020.405168 eV Core-core repulsion = 18771.431415 eV Total energy + Delta-G solvation = -3248.973752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.62538 -38.44032 -37.33783 -34.83603 -33.54822 -32.22063 -30.97945 -30.49865 -28.77557 -26.71522 -25.52001 -23.49619 -22.58731 -22.03118 -20.20708 -19.53608 -19.07707 -17.77054 -16.38596 -16.25395 -15.72349 -15.41362 -15.09019 -14.79547 -14.56944 -14.07814 -13.97009 -13.67437 -13.02809 -12.92774 -12.60815 -12.46935 -11.89434 -11.66622 -11.59160 -11.34861 -11.13621 -10.99988 -10.86854 -10.71177 -10.20933 -10.02939 -9.98602 -9.48192 -8.96537 -8.91508 -8.76025 -8.38105 -8.03980 -7.53965 -6.02377 -4.10812 1.72526 2.25277 2.50296 3.30669 3.37441 3.39853 3.63673 3.97081 4.24192 4.33211 4.34551 4.54904 4.58647 4.77376 4.97141 5.01159 5.15307 5.23783 5.28956 5.42602 5.46851 5.64827 6.00406 6.25894 6.54790 6.62582 6.64752 6.78879 6.84367 7.21839 7.25278 7.37086 7.54249 7.67485 7.71416 7.75862 7.92146 8.05999 8.31935 8.87772 8.96551 9.41008 9.59051 11.02915 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030656 B = 0.004333 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.128023 B = 6460.484691 C = 6982.716257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.048 0.952 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.580 3.420 15 O -0.546 6.546 16 C -0.281 4.281 17 C 0.090 3.910 18 N -0.302 5.302 19 N -0.395 5.395 20 C 0.319 3.681 21 N -0.578 5.578 22 C 0.043 3.957 23 C -0.175 4.175 24 C 0.132 3.868 25 H 0.049 0.951 26 H 0.018 0.982 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.384 0.616 32 H 0.191 0.809 33 H 0.375 0.625 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 9.450 12.571 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.366 3.634 15 O -0.426 6.426 16 C -0.298 4.298 17 C -0.098 4.098 18 N -0.122 5.122 19 N -0.183 5.183 20 C 0.093 3.907 21 N -0.211 5.211 22 C -0.086 4.086 23 C -0.215 4.215 24 C 0.011 3.989 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.216 0.784 32 H 0.208 0.792 33 H 0.205 0.795 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.760 9.214 12.841 20.313 hybrid contribution 1.411 0.457 -0.208 1.498 sum -11.348 9.671 12.633 19.543 Atomic orbital electron populations 1.21825 0.98264 0.97743 1.01471 1.21927 0.92707 0.99927 1.02016 1.18712 0.93873 0.89078 0.81145 0.93368 1.21273 0.90942 1.38609 1.06112 0.92145 1.24874 0.98377 0.94970 0.95469 1.69905 1.34953 1.37830 1.09365 0.86495 0.85218 0.78385 0.77262 1.20632 1.21195 1.19904 1.46246 1.14481 1.56586 1.18263 1.16907 0.82524 0.78515 0.85461 1.90757 1.51434 1.60552 1.39809 1.20047 0.95492 1.15693 0.98536 1.24065 0.99711 0.95864 0.90167 1.76931 0.90413 1.21898 1.22934 1.48996 1.12871 1.44870 1.11525 1.19500 0.91983 0.94603 0.84636 1.57209 1.00093 1.51299 1.12545 1.22342 0.92361 0.97213 0.96681 1.22697 1.00389 0.99876 0.98586 1.21896 0.84910 0.96682 0.95434 0.93234 0.96245 0.93915 0.88519 0.95201 0.92712 0.78379 0.79208 0.79498 0.89543 0.88352 0.88081 0.90354 0.89642 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.03 2.24 -69.08 -0.15 6.88 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.71 -15.28 5.01 -56.21 -0.28 -15.56 16 14 C 0.58 12.24 6.36 -12.81 -0.08 12.16 16 15 O -0.55 -13.01 13.51 5.20 0.07 -12.94 16 16 C -0.28 -4.93 6.15 -104.92 -0.64 -5.57 16 17 C 0.09 1.37 11.50 -16.84 -0.19 1.18 16 18 N -0.30 -4.55 12.52 30.94 0.39 -4.16 16 19 N -0.40 -5.28 4.03 -59.58 -0.24 -5.52 16 20 C 0.32 4.85 7.07 -153.80 -1.09 3.76 16 21 N -0.58 -7.58 6.19 -59.61 -0.37 -7.95 16 22 C 0.04 0.36 6.60 -3.61 -0.02 0.33 16 23 C -0.18 -1.08 6.17 -26.33 -0.16 -1.25 16 24 C 0.13 1.11 7.40 -3.56 -0.03 1.09 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.99 5.64 -51.93 -0.29 0.70 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.38 7.26 7.49 -40.82 -0.31 6.96 16 32 H 0.19 2.36 7.50 -52.49 -0.39 1.97 16 33 H 0.37 4.61 8.83 -39.29 -0.35 4.27 16 34 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -33.22 316.88 -8.02 -41.24 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.37 Total: 9.12 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.60 Total: -0.42 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.12 Total: -57.60 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.22 -8.02 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263775635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.237 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds