Wall clock time and date at job start Tue Mar 31 2020 00:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 304.99525 * 3 2 1 5 5 C 1.50701 * 109.47212 * 184.99607 * 3 2 1 6 6 H 1.08001 * 120.00213 * 239.99467 * 5 3 2 7 7 C 1.37880 * 119.99755 * 60.00086 * 5 3 2 8 8 N 1.31508 * 119.99915 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99825 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46734 * 90.00109 * 9 7 5 11 11 H 1.48499 * 109.47268 * 210.00057 * 9 7 5 12 12 H 1.48498 * 109.47211 * 330.00316 * 9 7 5 13 13 N 1.46506 * 109.47289 * 64.99653 * 3 2 1 14 14 C 1.34777 * 120.00033 * 275.00400 * 13 3 2 15 15 O 1.21685 * 119.99775 * 359.97438 * 14 13 3 16 16 C 1.46766 * 119.99951 * 179.97438 * 14 13 3 17 17 C 1.41636 * 126.55349 * 359.68225 * 16 14 13 18 18 N 1.30457 * 108.22796 * 179.85663 * 17 16 14 19 19 N 1.39494 * 109.13945 * 0.41891 * 18 17 16 20 20 C 1.35126 * 108.56295 * 359.72288 * 19 18 17 21 21 N 1.37898 * 125.24164 * 180.02562 * 20 19 18 22 22 C 1.47081 * 110.74769 * 341.88858 * 21 20 19 23 23 C 1.53221 * 109.54840 * 50.58178 * 22 21 20 24 24 C 1.46864 * 127.34190 * 179.72723 * 19 18 17 25 25 H 1.09006 * 109.46596 * 60.00412 * 1 2 3 26 26 H 1.09004 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47281 * 300.00513 * 1 2 3 28 28 H 1.09004 * 109.47686 * 239.99815 * 2 1 3 29 29 H 1.09002 * 109.46818 * 120.00038 * 2 1 3 30 30 H 0.97003 * 119.99339 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99812 * 94.99561 * 13 3 2 32 32 H 1.07997 * 125.88269 * 359.97438 * 17 16 14 33 33 H 1.00905 * 110.99691 * 105.68020 * 21 20 19 34 34 H 1.08997 * 109.46327 * 290.55161 * 22 21 20 35 35 H 1.08997 * 109.43488 * 170.59108 * 22 21 20 36 36 H 1.09004 * 109.57595 * 172.87669 * 23 22 21 37 37 H 1.08996 * 109.68915 * 52.55433 * 23 22 21 38 38 H 1.09004 * 109.79869 * 284.35860 * 24 19 18 39 39 H 1.09007 * 109.79705 * 45.16142 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1237 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1727 9 14 6.0050 0.8811 -1.3816 10 1 6.5548 -0.3504 -0.7599 11 1 6.3831 0.9222 -2.8171 12 1 6.5570 2.0736 -0.6899 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3418 2.6326 0.4309 16 6 0.0466 3.3202 2.6211 17 6 0.8337 3.4325 3.7933 18 7 0.1428 4.0839 4.6879 19 7 -1.1039 4.4106 4.1541 20 6 -1.1652 3.9438 2.8875 21 7 -2.2458 4.0783 2.0415 22 6 -3.4639 4.4022 2.7994 23 6 -3.1868 5.5837 3.7347 24 6 -2.1945 5.1366 4.8177 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8295 -0.0613 -2.9496 31 1 2.2719 2.1231 1.9978 32 1 1.8342 3.0471 3.9233 33 1 -2.0655 4.7730 1.3322 34 1 -3.7664 3.5362 3.3882 35 1 -4.2626 4.6670 2.1066 36 1 -4.1174 5.9054 4.2024 37 1 -2.7594 6.4097 3.1662 38 1 -2.6955 4.4804 5.5294 39 1 -1.7955 6.0082 5.3368 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263775635.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:04 Heat of formation + Delta-G solvation = 16.927307 kcal Electronic energy + Delta-G solvation = -22021.448894 eV Core-core repulsion = 18771.431415 eV Total energy + Delta-G solvation = -3250.017478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.70751 -40.11492 -38.27151 -36.73479 -34.50357 -34.15734 -32.75757 -31.54693 -30.09712 -28.61496 -26.32905 -25.17438 -23.96590 -23.22150 -21.78281 -20.83537 -20.53995 -19.25704 -17.95863 -17.37128 -16.99209 -16.79303 -16.48607 -16.04643 -15.89101 -15.63477 -15.28469 -14.60148 -14.53435 -14.39496 -13.91962 -13.67206 -13.47809 -13.27636 -13.10111 -12.83867 -12.61147 -12.36692 -12.32986 -12.11363 -12.01114 -11.97312 -11.51460 -10.99462 -10.96009 -10.54123 -10.38835 -10.00347 -9.50700 -9.09602 -8.09574 -6.26103 0.55730 1.23860 1.31393 1.48306 1.48779 1.59303 2.43129 2.72745 2.78520 2.89303 3.19795 3.34495 3.69503 3.84646 4.01434 4.15193 4.25858 4.36056 4.49093 4.57147 4.57852 4.65462 4.69340 4.77395 4.88027 4.99525 5.16674 5.27283 5.34035 5.50569 5.53698 5.64836 5.75690 5.87889 5.89764 6.06547 6.22785 6.26040 6.59236 6.82898 7.22475 7.41410 7.81423 8.95878 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030656 B = 0.004333 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.128023 B = 6460.484691 C = 6982.716257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.283 3.717 4 H -0.002 1.002 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.707 5.707 14 C 0.580 3.420 15 O -0.582 6.582 16 C -0.323 4.323 17 C 0.093 3.907 18 N -0.313 5.313 19 N -0.388 5.388 20 C 0.330 3.670 21 N -0.598 5.598 22 C 0.038 3.962 23 C -0.161 4.161 24 C 0.117 3.883 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.398 0.602 32 H 0.211 0.789 33 H 0.377 0.623 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 10.510 14.656 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.180 3.820 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.355 5.355 14 C 0.369 3.631 15 O -0.464 6.464 16 C -0.340 4.340 17 C -0.095 4.095 18 N -0.133 5.133 19 N -0.175 5.175 20 C 0.101 3.899 21 N -0.233 5.233 22 C -0.089 4.089 23 C -0.201 4.201 24 C -0.002 4.002 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.232 0.768 32 H 0.227 0.773 33 H 0.208 0.792 34 H 0.100 0.900 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.274 10.307 14.990 22.520 hybrid contribution 1.403 0.184 -0.824 1.638 sum -11.871 10.491 14.166 21.252 Atomic orbital electron populations 1.21635 0.97029 0.98721 1.00271 1.21782 0.93697 0.99404 1.01006 1.18293 0.93410 0.88944 0.81380 0.98362 1.21607 0.91561 1.38657 1.06597 0.91147 1.25747 1.03153 0.94473 0.95044 1.70058 1.36932 1.38513 1.09878 0.85394 0.79342 0.78802 0.77068 1.19766 1.21295 1.18965 1.45995 1.15332 1.56819 1.17379 1.17343 0.81657 0.77776 0.86333 1.90722 1.52295 1.61924 1.41456 1.19789 0.97780 1.18501 0.97908 1.24326 1.00421 0.95517 0.89187 1.76882 0.91311 1.22036 1.23080 1.49373 1.13126 1.43893 1.11089 1.19582 0.91639 0.93222 0.85473 1.57203 1.00990 1.51854 1.13259 1.22547 0.90839 0.98162 0.97370 1.22661 1.01385 0.98527 0.97492 1.22441 0.84132 0.97189 0.96419 0.95445 0.94018 0.93998 0.91040 0.94415 0.92713 0.76788 0.77297 0.79201 0.89970 0.85988 0.84164 0.90281 0.88065 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.01 16 3 C 0.28 15.06 2.24 44.24 0.10 15.16 16 4 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 16 5 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.86 5.29 84.66 0.45 1.31 16 8 N -0.92 -53.27 11.29 21.45 0.24 -53.02 16 9 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 N -0.71 -31.21 5.01 -449.98 -2.26 -33.47 16 14 C 0.58 25.17 6.36 86.47 0.55 25.72 16 15 O -0.58 -28.87 13.51 -4.30 -0.06 -28.93 16 16 C -0.32 -11.35 6.15 -20.06 -0.12 -11.47 16 17 C 0.09 2.77 11.50 85.74 0.99 3.76 16 18 N -0.31 -8.96 12.52 -56.04 -0.70 -9.66 16 19 N -0.39 -9.62 4.03 -342.40 -1.38 -11.00 16 20 C 0.33 9.78 7.07 132.54 0.94 10.71 16 21 N -0.60 -15.21 6.19 -342.50 -2.12 -17.33 16 22 C 0.04 0.54 6.60 86.34 0.57 1.11 16 23 C -0.16 -1.40 6.17 30.85 0.19 -1.21 16 24 C 0.12 1.60 7.40 86.49 0.64 2.24 16 25 H 0.03 1.39 7.84 -2.38 -0.02 1.37 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.99 5.64 -2.39 -0.01 1.97 16 28 H 0.07 4.07 5.95 -2.38 -0.01 4.05 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.40 15.13 7.49 -92.71 -0.69 14.44 16 32 H 0.21 5.00 7.50 -2.91 -0.02 4.97 16 33 H 0.38 9.17 8.83 -89.69 -0.79 8.38 16 34 H 0.08 1.26 8.13 -2.39 -0.02 1.24 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.14 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -74.24 316.88 0.65 -73.58 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.40 Total: 28.15 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 5.30 Total: 6.84 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -6.22 Total: -124.49 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.24 0.65 -73.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263775635.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.510 kcal (2) G-P(sol) polarization free energy of solvation -74.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds