Wall clock time and date at job start Tue Mar 31 2020 00:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46818 * 2 1 4 4 H 1.08996 * 109.47622 * 55.00370 * 3 2 1 5 5 C 1.50706 * 109.46554 * 175.00408 * 3 2 1 6 6 H 1.08007 * 119.99884 * 120.00508 * 5 3 2 7 7 C 1.37871 * 119.99909 * 299.99207 * 5 3 2 8 8 N 1.31522 * 119.99782 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00290 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47103 * 89.99377 * 9 7 5 11 11 H 1.48495 * 109.47288 * 209.99393 * 9 7 5 12 12 H 1.48501 * 109.46887 * 329.99635 * 9 7 5 13 13 N 1.46505 * 109.47214 * 294.99758 * 3 2 1 14 14 C 1.34780 * 119.99149 * 85.00453 * 13 3 2 15 15 O 1.21682 * 120.00222 * 359.97438 * 14 13 3 16 16 C 1.46777 * 119.99209 * 180.02562 * 14 13 3 17 17 C 1.41632 * 126.55772 * 0.02562 * 16 14 13 18 18 N 1.30458 * 108.22826 * 180.25518 * 17 16 14 19 19 N 1.39490 * 109.13579 * 359.57980 * 18 17 16 20 20 C 1.35115 * 108.57076 * 0.42495 * 19 18 17 21 21 N 1.37893 * 125.25164 * 179.78337 * 20 19 18 22 22 C 1.47089 * 110.74224 * 341.88784 * 21 20 19 23 23 C 1.53223 * 109.55336 * 50.57317 * 22 21 20 24 24 C 1.46866 * 127.33435 * 180.16239 * 19 18 17 25 25 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46578 * 299.99582 * 1 2 3 27 27 H 1.08996 * 109.47278 * 59.99653 * 1 2 3 28 28 H 1.08999 * 109.46683 * 239.99980 * 2 1 3 29 29 H 1.08996 * 109.47278 * 120.00347 * 2 1 3 30 30 H 0.96997 * 119.99712 * 180.02562 * 8 7 5 31 31 H 0.96992 * 120.00118 * 265.00765 * 13 3 2 32 32 H 1.08002 * 125.88090 * 359.97438 * 17 16 14 33 33 H 1.00908 * 111.00214 * 105.66305 * 21 20 19 34 34 H 1.08998 * 109.45573 * 290.54992 * 22 21 20 35 35 H 1.09000 * 109.43879 * 170.59120 * 22 21 20 36 36 H 1.09001 * 109.57348 * 172.88213 * 23 22 21 37 37 H 1.08998 * 109.67992 * 52.55903 * 23 22 21 38 38 H 1.09002 * 109.80334 * 284.65099 * 24 19 18 39 39 H 1.09008 * 109.80193 * 45.46146 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 5.4541 0.8804 1.3361 9 14 3.0965 0.1091 2.5701 10 1 2.8755 -1.3271 2.2635 11 1 3.7939 0.2349 3.8751 12 1 1.7879 0.8076 2.6388 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3422 2.6318 -0.4312 16 6 0.0466 3.3201 -2.6212 17 6 0.8357 3.4374 -3.7915 18 7 0.1449 4.0890 -4.6859 19 7 -1.1037 4.4110 -4.1539 20 6 -1.1653 3.9439 -2.8876 21 7 -2.2462 4.0774 -2.0417 22 6 -3.1472 5.1408 -2.5117 23 6 -3.4713 4.9208 -3.9930 24 6 -2.1941 5.1375 -4.8174 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.8772 0.4820 2.1127 31 1 2.2718 2.1231 -1.9978 32 1 1.8385 3.0572 -3.9195 33 1 -2.7393 3.2024 -1.9441 34 1 -2.6628 6.1091 -2.3859 35 1 -4.0693 5.1179 -1.9309 36 1 -4.2350 5.6314 -4.3091 37 1 -3.8342 3.9040 -4.1423 38 1 -1.9576 6.2008 -4.8592 39 1 -2.3351 4.7508 -5.8267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263775636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:08 Heat of formation + Delta-G solvation = 49.014378 kcal Electronic energy + Delta-G solvation = -22110.266003 eV Core-core repulsion = 18861.639924 eV Total energy + Delta-G solvation = -3248.626079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.70111 -38.67007 -37.41680 -35.11087 -33.62490 -32.25515 -31.49132 -30.63630 -28.91702 -27.23074 -25.58308 -23.46979 -22.47762 -22.15303 -20.56529 -19.64446 -19.33968 -17.90096 -16.57926 -16.33901 -15.82252 -15.57530 -15.34224 -14.88961 -14.81759 -14.21213 -13.97316 -13.72318 -13.20435 -13.01301 -12.87641 -12.64525 -12.18129 -11.86836 -11.72531 -11.67683 -11.60752 -11.07958 -10.97984 -10.75107 -10.52288 -10.06200 -9.81814 -9.44087 -9.10844 -9.03641 -8.90854 -8.64770 -8.14561 -7.78046 -6.11789 -4.13080 1.64709 2.19076 2.42230 3.30878 3.42507 3.48967 3.56093 3.91084 4.15812 4.18700 4.33849 4.40703 4.51339 4.68126 4.91562 4.96210 5.09685 5.18387 5.22446 5.34774 5.40942 5.58544 5.86938 6.08745 6.13545 6.17291 6.30852 6.55892 6.71080 6.78154 6.83127 6.98639 7.09490 7.17219 7.42471 7.48927 7.65942 7.68106 8.32618 8.73972 8.88447 9.23557 9.50908 11.00479 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.004588 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.277103 B = 6102.072937 C = 6585.919004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.245 3.755 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.080 0.920 7 C 0.077 3.923 8 N -0.895 5.895 9 Si 0.883 3.117 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.259 1.259 13 N -0.701 5.701 14 C 0.583 3.417 15 O -0.548 6.548 16 C -0.283 4.283 17 C 0.092 3.908 18 N -0.300 5.300 19 N -0.394 5.394 20 C 0.321 3.679 21 N -0.578 5.578 22 C 0.042 3.958 23 C -0.175 4.175 24 C 0.131 3.869 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.391 0.609 32 H 0.193 0.807 33 H 0.374 0.626 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.940 6.740 -12.077 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C 0.142 3.858 4 H 0.067 0.933 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.184 1.184 13 N -0.348 5.348 14 C 0.370 3.630 15 O -0.427 6.427 16 C -0.300 4.300 17 C -0.096 4.096 18 N -0.119 5.119 19 N -0.181 5.181 20 C 0.095 3.905 21 N -0.212 5.212 22 C -0.086 4.086 23 C -0.215 4.215 24 C 0.010 3.990 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.224 0.776 32 H 0.210 0.790 33 H 0.204 0.796 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.151 7.569 -12.042 23.060 hybrid contribution -0.416 -1.108 0.416 1.255 sum -18.567 6.461 -11.626 22.840 Atomic orbital electron populations 1.21865 0.97007 0.98700 1.02365 1.22278 0.94363 1.00118 1.00877 1.19085 0.95365 0.88329 0.83045 0.93329 1.21097 0.88807 1.39337 1.07688 0.90215 1.24833 0.94830 0.95246 0.97671 1.69879 1.08694 1.44830 1.29826 0.86902 0.81063 0.79897 0.80848 1.20354 1.22350 1.18367 1.45909 1.14765 1.56469 1.17695 1.16921 0.82423 0.78150 0.85544 1.90751 1.51727 1.60546 1.39721 1.19925 0.94434 1.17128 0.98535 1.24098 0.99672 0.95692 0.90164 1.76959 0.91492 1.21377 1.22119 1.49017 1.13395 1.46626 1.09108 1.19487 0.94024 0.94868 0.82160 1.57216 1.08748 1.11780 1.43436 1.22353 0.97388 0.95878 0.93023 1.22696 0.97065 1.04367 0.97398 1.21913 0.82939 0.96856 0.97267 0.95321 0.92879 0.92790 0.92411 0.92998 0.92426 0.77586 0.79047 0.79561 0.89461 0.88325 0.88015 0.90362 0.89550 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.51 37.16 0.32 -2.59 16 2 C -0.14 -3.12 5.11 -26.73 -0.14 -3.25 16 3 C 0.25 5.94 1.83 -69.08 -0.13 5.82 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.53 -14.58 9.31 -34.44 -0.32 -14.90 16 6 H 0.08 2.30 7.98 -52.48 -0.42 1.88 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 9 Si 0.88 22.13 24.41 -169.99 -4.15 17.98 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.33 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.26 -6.44 6.53 56.52 0.37 -6.08 16 13 N -0.70 -14.43 5.01 -56.21 -0.28 -14.71 16 14 C 0.58 11.64 6.36 -12.81 -0.08 11.55 16 15 O -0.55 -12.24 13.50 5.20 0.07 -12.17 16 16 C -0.28 -4.74 6.15 -104.91 -0.64 -5.39 16 17 C 0.09 1.35 11.50 -16.84 -0.19 1.16 16 18 N -0.30 -4.38 12.52 30.94 0.39 -3.99 16 19 N -0.39 -5.04 4.03 -59.58 -0.24 -5.28 16 20 C 0.32 4.65 7.07 -153.81 -1.09 3.56 16 21 N -0.58 -7.13 6.19 -59.60 -0.37 -7.50 16 22 C 0.04 0.33 6.60 -3.61 -0.02 0.30 16 23 C -0.18 -0.99 6.17 -26.33 -0.16 -1.15 16 24 C 0.13 1.04 7.40 -3.56 -0.03 1.02 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 1.14 7.84 -51.93 -0.41 0.74 16 27 H 0.05 1.09 5.64 -51.93 -0.29 0.79 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.23 3.21 -51.93 -0.17 1.07 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.39 7.16 7.49 -40.82 -0.31 6.86 16 32 H 0.19 2.31 7.50 -52.49 -0.39 1.91 16 33 H 0.37 4.23 8.83 -39.29 -0.35 3.89 16 34 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -34.39 310.11 -6.96 -41.35 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.24 Total: 7.53 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.58 Total: -1.77 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.27 Total: -57.60 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.98 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.39 -6.96 -41.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263775636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.366 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds