Wall clock time and date at job start Tue Mar 31 2020 00:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46818 * 2 1 4 4 H 1.08996 * 109.47622 * 55.00370 * 3 2 1 5 5 C 1.50706 * 109.46554 * 175.00408 * 3 2 1 6 6 H 1.08007 * 119.99884 * 120.00508 * 5 3 2 7 7 C 1.37871 * 119.99909 * 299.99207 * 5 3 2 8 8 N 1.31522 * 119.99782 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00290 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47103 * 89.99377 * 9 7 5 11 11 H 1.48495 * 109.47288 * 209.99393 * 9 7 5 12 12 H 1.48501 * 109.46887 * 329.99635 * 9 7 5 13 13 N 1.46505 * 109.47214 * 294.99758 * 3 2 1 14 14 C 1.34780 * 119.99149 * 85.00453 * 13 3 2 15 15 O 1.21682 * 120.00222 * 359.97438 * 14 13 3 16 16 C 1.46777 * 119.99209 * 180.02562 * 14 13 3 17 17 C 1.41632 * 126.55772 * 0.02562 * 16 14 13 18 18 N 1.30458 * 108.22826 * 180.25518 * 17 16 14 19 19 N 1.39490 * 109.13579 * 359.57980 * 18 17 16 20 20 C 1.35115 * 108.57076 * 0.42495 * 19 18 17 21 21 N 1.37893 * 125.25164 * 179.78337 * 20 19 18 22 22 C 1.47089 * 110.74224 * 341.88784 * 21 20 19 23 23 C 1.53223 * 109.55336 * 50.57317 * 22 21 20 24 24 C 1.46866 * 127.33435 * 180.16239 * 19 18 17 25 25 H 1.09002 * 109.46939 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46578 * 299.99582 * 1 2 3 27 27 H 1.08996 * 109.47278 * 59.99653 * 1 2 3 28 28 H 1.08999 * 109.46683 * 239.99980 * 2 1 3 29 29 H 1.08996 * 109.47278 * 120.00347 * 2 1 3 30 30 H 0.96997 * 119.99712 * 180.02562 * 8 7 5 31 31 H 0.96992 * 120.00118 * 265.00765 * 13 3 2 32 32 H 1.08002 * 125.88090 * 359.97438 * 17 16 14 33 33 H 1.00908 * 111.00214 * 105.66305 * 21 20 19 34 34 H 1.08998 * 109.45573 * 290.54992 * 22 21 20 35 35 H 1.09000 * 109.43879 * 170.59120 * 22 21 20 36 36 H 1.09001 * 109.57348 * 172.88213 * 23 22 21 37 37 H 1.08998 * 109.67992 * 52.55903 * 23 22 21 38 38 H 1.09002 * 109.80334 * 284.65099 * 24 19 18 39 39 H 1.09008 * 109.80193 * 45.46146 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5420 1.4443 0.1237 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2279 8 7 5.4541 0.8804 1.3361 9 14 3.0965 0.1091 2.5701 10 1 2.8755 -1.3271 2.2635 11 1 3.7939 0.2349 3.8751 12 1 1.7879 0.8076 2.6388 13 7 1.6524 2.0975 -1.2519 14 6 0.4351 2.6644 -1.3669 15 8 -0.3422 2.6318 -0.4312 16 6 0.0466 3.3201 -2.6212 17 6 0.8357 3.4374 -3.7915 18 7 0.1449 4.0890 -4.6859 19 7 -1.1037 4.4110 -4.1539 20 6 -1.1653 3.9439 -2.8876 21 7 -2.2462 4.0774 -2.0417 22 6 -3.1472 5.1408 -2.5117 23 6 -3.4713 4.9208 -3.9930 24 6 -2.1941 5.1375 -4.8174 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.8772 0.4820 2.1127 31 1 2.2718 2.1231 -1.9978 32 1 1.8385 3.0572 -3.9195 33 1 -2.7393 3.2024 -1.9441 34 1 -2.6628 6.1091 -2.3859 35 1 -4.0693 5.1179 -1.9309 36 1 -4.2350 5.6314 -4.3091 37 1 -3.8342 3.9040 -4.1423 38 1 -1.9576 6.2008 -4.8592 39 1 -2.3351 4.7508 -5.8267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263775636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:08 Heat of formation + Delta-G solvation = 22.592938 kcal Electronic energy + Delta-G solvation = -22111.411722 eV Core-core repulsion = 18861.639924 eV Total energy + Delta-G solvation = -3249.771798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.73028 -40.25775 -38.28668 -36.90627 -34.52252 -34.29609 -33.15247 -31.56493 -30.19010 -29.04081 -26.33944 -24.91327 -24.00852 -23.25771 -22.06508 -20.95555 -20.55844 -19.39802 -18.19612 -17.51767 -17.20621 -16.75539 -16.53227 -16.14469 -16.01654 -15.70123 -15.21044 -14.93515 -14.66813 -14.39784 -13.97510 -13.96965 -13.64321 -13.57847 -13.33008 -12.89200 -12.70127 -12.38522 -12.36672 -12.28403 -12.03623 -11.78816 -11.30801 -11.15886 -10.99848 -10.80220 -10.51913 -10.02392 -9.62932 -9.14062 -8.32965 -6.37630 0.53906 1.21254 1.29730 1.30760 1.38685 1.49678 2.31150 2.66188 2.71887 2.76301 3.03612 3.32208 3.68969 3.83031 4.00712 4.13496 4.23047 4.31652 4.35512 4.39934 4.44251 4.54846 4.57937 4.70260 4.77749 4.95600 4.99550 5.07230 5.20735 5.26482 5.32851 5.47791 5.51034 5.61190 5.81133 5.88793 6.20774 6.24675 6.57812 6.64694 7.09706 7.26825 7.69163 8.82444 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032019 B = 0.004588 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.277103 B = 6102.072937 C = 6585.919004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.136 4.136 3 C 0.254 3.746 4 H 0.021 0.979 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.938 3.062 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.702 5.702 14 C 0.586 3.414 15 O -0.577 6.577 16 C -0.324 4.324 17 C 0.093 3.907 18 N -0.314 5.314 19 N -0.387 5.387 20 C 0.333 3.667 21 N -0.597 5.597 22 C 0.038 3.962 23 C -0.160 4.160 24 C 0.116 3.884 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.269 0.731 31 H 0.401 0.599 32 H 0.208 0.792 33 H 0.379 0.621 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.738 6.943 -13.208 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.175 4.175 3 C 0.149 3.851 4 H 0.039 0.961 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.171 4.171 8 N -0.576 5.576 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.351 5.351 14 C 0.375 3.625 15 O -0.458 6.458 16 C -0.341 4.341 17 C -0.095 4.095 18 N -0.134 5.134 19 N -0.174 5.174 20 C 0.104 3.896 21 N -0.232 5.232 22 C -0.090 4.090 23 C -0.200 4.200 24 C -0.003 4.003 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.225 0.775 33 H 0.210 0.790 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.158 0.842 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.979 7.792 -13.228 25.996 hybrid contribution 0.386 -1.017 0.683 1.284 sum -20.592 6.775 -12.545 25.046 Atomic orbital electron populations 1.21730 0.95105 1.00274 1.01654 1.22192 0.95998 0.98474 1.00791 1.18720 0.92945 0.89568 0.83861 0.96139 1.21339 0.90528 1.38218 1.06857 0.92698 1.25552 0.95732 0.95949 0.99855 1.69990 1.10298 1.46407 1.30868 0.86016 0.79342 0.79944 0.78204 1.18494 1.22187 1.18424 1.45740 1.15649 1.56894 1.16820 1.17266 0.81508 0.77393 0.86350 1.90718 1.52370 1.61673 1.41061 1.19713 0.96516 1.19869 0.97965 1.24326 1.00302 0.95423 0.89461 1.76905 0.92473 1.21598 1.22411 1.49393 1.13544 1.45975 1.08525 1.19574 0.93952 0.93307 0.82809 1.57217 1.09446 1.13054 1.43459 1.22552 0.97371 0.93969 0.95085 1.22661 0.96550 1.05700 0.95092 1.22451 0.82424 0.97191 0.98205 0.92496 0.94361 0.92745 0.91518 0.93941 0.92191 0.76475 0.77526 0.78971 0.90134 0.85831 0.84240 0.90055 0.88241 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.51 71.98 0.61 -4.54 16 2 C -0.14 -6.04 5.11 30.60 0.16 -5.89 16 3 C 0.25 12.44 1.83 44.25 0.08 12.53 16 4 H 0.02 1.13 6.63 -2.39 -0.02 1.12 16 5 C -0.53 -29.85 9.31 25.60 0.24 -29.61 16 6 H 0.05 3.28 7.98 -2.91 -0.02 3.26 16 7 C 0.03 1.64 5.45 84.65 0.46 2.10 16 8 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 9 Si 0.94 45.88 24.41 68.60 1.67 47.55 16 10 H -0.26 -11.89 6.83 99.48 0.68 -11.21 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 12 H -0.26 -12.64 6.53 99.48 0.65 -11.99 16 13 N -0.70 -29.34 5.01 -449.96 -2.26 -31.59 16 14 C 0.59 23.55 6.36 86.47 0.55 24.10 16 15 O -0.58 -25.94 13.50 -4.29 -0.06 -26.00 16 16 C -0.32 -10.75 6.15 -20.05 -0.12 -10.88 16 17 C 0.09 2.69 11.50 85.73 0.99 3.67 16 18 N -0.31 -8.78 12.52 -56.03 -0.70 -9.49 16 19 N -0.39 -9.18 4.03 -342.40 -1.38 -10.56 16 20 C 0.33 9.24 7.07 132.55 0.94 10.18 16 21 N -0.60 -13.81 6.19 -342.48 -2.12 -15.93 16 22 C 0.04 0.48 6.60 86.34 0.57 1.04 16 23 C -0.16 -1.18 6.17 30.85 0.19 -0.99 16 24 C 0.12 1.48 7.40 86.49 0.64 2.12 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.04 1.60 7.84 -2.38 -0.02 1.59 16 27 H 0.05 2.13 5.64 -2.39 -0.01 2.12 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.04 1.96 3.21 -2.39 -0.01 1.95 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.40 14.97 7.49 -92.71 -0.69 14.28 16 32 H 0.21 4.94 7.50 -2.91 -0.02 4.92 16 33 H 0.38 8.04 8.83 -89.69 -0.79 7.25 16 34 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 35 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -75.55 310.11 0.28 -75.27 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.48 Total: 23.99 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.30 Total: 3.84 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -6.16 Total: -124.65 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.06 Total: -26.00 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.67 Total: 47.55 kcal Total: -75.55 0.28 -75.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263775636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.861 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds