Wall clock time and date at job start Mon Mar 30 2020 23:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30857 * 125.41598 * 2 1 4 4 C 1.33310 * 109.68553 * 180.02562 * 3 2 1 5 5 C 1.36667 * 107.78704 * 359.97438 * 4 3 2 6 6 C 1.46764 * 126.84470 * 179.97438 * 5 4 3 7 7 O 1.21681 * 120.00030 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99826 * 180.02562 * 6 5 4 9 9 C 1.47026 * 125.65100 * 0.02689 * 8 6 5 10 10 C 1.54318 * 107.27321 * 178.67463 * 9 8 6 11 11 C 1.55160 * 102.94100 * 337.80522 * 10 9 8 12 12 H 1.08992 * 111.00480 * 277.38794 * 11 10 9 13 13 C 1.53006 * 110.99966 * 153.57650 * 11 10 9 14 14 N 1.46503 * 109.46863 * 175.00130 * 13 11 10 15 15 C 1.36930 * 120.00177 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.38815 * 120.00346 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99659 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00231 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47044 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47309 * 119.99599 * 19 17 15 22 22 H 1.48507 * 109.46719 * 239.99798 * 19 17 15 23 23 C 1.47425 * 125.64767 * 179.71691 * 8 6 5 24 24 N 1.34488 * 125.42034 * 180.31352 * 2 1 3 25 25 H 0.97002 * 126.47620 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.46879 * 89.98075 * 1 2 3 27 27 H 1.08997 * 109.46344 * 209.97299 * 1 2 3 28 28 H 1.08997 * 109.47234 * 329.97628 * 1 2 3 29 29 H 1.08004 * 126.10811 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.87797 * 298.09210 * 9 8 6 31 31 H 1.08994 * 109.88320 * 59.25443 * 9 8 6 32 32 H 1.09003 * 110.72326 * 96.16899 * 10 9 8 33 33 H 1.09001 * 110.72286 * 219.26466 * 10 9 8 34 34 H 1.09000 * 109.47087 * 294.99616 * 13 11 10 35 35 H 1.08999 * 109.46967 * 55.00191 * 13 11 10 36 36 H 0.97001 * 119.99650 * 359.97438 * 14 13 11 37 37 H 0.96998 * 120.00018 * 180.02562 * 18 17 15 38 38 H 1.08996 * 110.37004 * 323.23060 * 23 8 6 39 39 H 1.09002 * 110.37038 * 85.55404 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8030 -1.4981 -0.0013 7 8 5.9039 -0.9798 -0.0020 8 7 4.6904 -2.8411 -0.0015 9 6 3.4283 -3.5953 -0.0013 10 6 3.7907 -5.0949 -0.0357 11 6 5.2263 -5.0922 -0.6244 12 1 5.2023 -5.0318 -1.7124 13 6 6.0103 -6.3226 -0.1634 14 7 7.3143 -6.3488 -0.8307 15 6 8.1949 -7.3653 -0.5731 16 1 7.9283 -8.1474 0.1223 17 6 9.4307 -7.3899 -1.2049 18 7 9.7557 -6.4364 -2.0520 19 14 10.6317 -8.7769 -0.8540 20 1 10.0307 -9.7157 0.1272 21 1 10.9318 -9.5026 -2.1143 22 1 11.8876 -8.2147 -0.2953 23 6 5.8125 -3.7973 -0.0083 24 7 2.2865 -1.0960 -0.0060 25 1 1.9851 -2.0179 -0.0107 26 1 -0.3633 0.0003 -1.0276 27 1 -0.3632 -0.8902 0.5134 28 1 -0.3633 0.8897 0.5142 29 1 4.3978 1.3724 -0.0011 30 1 2.8628 -3.3712 0.9032 31 1 2.8412 -3.3355 -0.8821 32 1 3.7870 -5.5158 0.9698 33 1 3.1063 -5.6424 -0.6838 34 1 6.1554 -6.2775 0.9160 35 1 5.4537 -7.2244 -0.4180 36 1 7.5535 -5.6465 -1.4555 37 1 10.6191 -6.4538 -2.4938 38 1 6.6287 -3.4201 -0.6243 39 1 6.1583 -3.9838 1.0084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267031959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:03 Heat of formation + Delta-G solvation = 13.040219 kcal Electronic energy + Delta-G solvation = -21205.424859 eV Core-core repulsion = 17955.238824 eV Total energy + Delta-G solvation = -3250.186035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.37286 -40.97136 -38.90716 -36.53929 -34.40541 -33.56411 -32.85063 -31.98380 -30.18505 -28.65290 -27.09230 -25.41999 -23.86425 -22.97689 -22.21454 -21.41586 -20.97040 -19.30335 -18.65742 -17.60808 -17.40028 -16.86638 -16.67331 -16.23775 -15.65463 -15.34700 -15.18980 -14.96890 -14.80809 -14.40054 -14.14686 -13.98693 -13.56109 -13.41609 -13.21769 -13.14503 -13.06889 -12.80716 -12.27216 -12.15033 -11.94032 -11.70236 -11.66057 -11.62615 -11.26976 -11.15511 -10.96171 -10.02153 -9.53229 -9.01419 -7.96088 -5.25434 0.14047 1.46580 1.47859 1.57722 1.58050 1.68513 1.96228 2.16089 2.55102 3.21918 3.37592 3.43105 3.47569 3.64964 3.81599 4.03177 4.08055 4.15069 4.21460 4.29653 4.45721 4.53442 4.58290 4.73284 4.77275 4.77621 4.83306 4.95438 4.96958 5.08894 5.13639 5.18807 5.36403 5.41834 5.49720 6.21694 6.25807 6.27098 6.79222 6.87332 7.31898 8.08227 8.28983 9.27796 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039102 B = 0.003234 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.898654 B = 8656.063971 C = 9210.207744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.249 3.751 3 N -0.528 5.528 4 C 0.059 3.941 5 C -0.096 4.096 6 C 0.600 3.400 7 O -0.575 6.575 8 N -0.616 5.616 9 C 0.084 3.916 10 C -0.108 4.108 11 C -0.097 4.097 12 H 0.077 0.923 13 C 0.163 3.837 14 N -0.750 5.750 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.293 1.293 22 H -0.297 1.297 23 C 0.119 3.881 24 N -0.540 5.540 25 H 0.436 0.564 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.179 0.821 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.026 0.974 35 H 0.039 0.961 36 H 0.371 0.629 37 H 0.250 0.750 38 H 0.045 0.955 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.817 7.449 5.492 27.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 N -0.248 5.248 4 C -0.095 4.095 5 C -0.212 4.212 6 C 0.391 3.609 7 O -0.455 6.455 8 N -0.348 5.348 9 C -0.038 4.038 10 C -0.146 4.146 11 C -0.117 4.117 12 H 0.096 0.904 13 C 0.037 3.963 14 N -0.392 5.392 15 C -0.374 4.374 16 H 0.099 0.901 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.220 1.220 22 H -0.224 1.224 23 C -0.003 4.003 24 N -0.151 5.151 25 H 0.283 0.717 26 H 0.122 0.878 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.196 0.804 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.203 0.797 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.480 8.390 5.603 27.405 hybrid contribution 1.971 -1.371 -0.334 2.424 sum -23.509 7.019 5.269 25.094 Atomic orbital electron populations 1.20594 0.80497 1.06330 1.05725 1.24428 0.97616 0.80869 0.98582 1.70221 1.01867 1.29953 1.22804 1.22766 0.95406 0.91577 0.99759 1.20667 0.84177 0.95313 1.21088 1.16858 0.87224 0.80560 0.76294 1.90851 1.28124 1.73367 1.53159 1.48498 1.09847 1.04221 1.72260 1.22567 0.85489 0.92788 1.02964 1.22660 0.94258 0.93768 1.03873 1.22424 0.96401 0.92503 1.00337 0.90436 1.20778 0.85186 0.95208 0.95130 1.42655 1.15129 1.29009 1.52434 1.19695 0.95684 1.02286 1.19731 0.90146 1.25621 1.00159 1.01235 1.00166 1.69837 1.22684 1.36125 1.33645 0.85061 0.78656 0.78738 0.77229 1.18607 1.22041 1.22433 1.22172 0.89047 0.88460 1.00645 1.43674 1.04533 1.11496 1.55432 0.71724 0.87811 0.87305 0.88191 0.80391 0.88533 0.89258 0.88552 0.86470 0.95575 0.94338 0.79716 0.94116 0.93632 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.25 3.93 8.12 138.20 1.12 5.05 16 3 N -0.53 -12.46 11.20 -187.39 -2.10 -14.56 16 4 C 0.06 1.57 11.66 84.10 0.98 2.55 16 5 C -0.10 -2.42 6.89 40.01 0.28 -2.15 16 6 C 0.60 19.05 7.82 86.47 0.68 19.72 16 7 O -0.58 -23.82 17.16 -4.29 -0.07 -23.89 16 8 N -0.62 -16.54 3.33 -816.41 -2.72 -19.25 16 9 C 0.08 1.24 5.12 86.73 0.44 1.68 16 10 C -0.11 -1.70 6.42 31.78 0.20 -1.49 16 11 C -0.10 -2.73 3.05 -9.40 -0.03 -2.76 16 12 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 13 C 0.16 5.91 5.72 86.38 0.49 6.40 16 14 N -0.75 -37.51 5.55 -343.44 -1.91 -39.42 16 15 C -0.24 -13.41 9.99 84.04 0.84 -12.57 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 18 N -0.97 -60.82 13.06 21.65 0.28 -60.54 16 19 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 23 C 0.12 3.92 6.32 86.85 0.55 4.47 16 24 N -0.54 -8.41 5.67 -176.11 -1.00 -9.41 16 25 H 0.44 3.69 5.13 -92.71 -0.48 3.21 16 26 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.18 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.10 0.90 7.30 -2.38 -0.02 0.88 16 31 H 0.09 0.93 7.08 -2.39 -0.02 0.91 16 32 H 0.10 1.34 8.04 -2.39 -0.02 1.32 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.03 0.95 7.96 -2.39 -0.02 0.93 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.37 20.28 7.67 -92.71 -0.71 19.57 16 37 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 39 H 0.07 2.24 7.91 -2.39 -0.02 2.22 16 Total: -1.00 -80.74 326.12 1.18 -79.56 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.11 Total: 21.94 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 6.77 Total: 17.13 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -7.44 Total: -143.18 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.07 Total: -23.89 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -80.74 1.18 -79.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267031959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.600 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds