Wall clock time and date at job start Mon Mar 30 2020 23:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30863 * 125.41928 * 2 1 4 4 C 1.33318 * 109.68665 * 179.97438 * 3 2 1 5 5 C 1.36659 * 107.78525 * 359.97438 * 4 3 2 6 6 C 1.46763 * 126.84645 * 179.97438 * 5 4 3 7 7 O 1.21687 * 119.99842 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00533 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00529 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47296 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.46924 * 180.02562 * 10 9 8 12 12 C 1.36935 * 119.99703 * 269.99460 * 11 10 9 13 13 H 1.08004 * 119.99524 * 144.93157 * 12 11 10 14 14 C 1.38806 * 120.00247 * 324.93172 * 12 11 10 15 15 N 1.31616 * 120.00040 * 337.93215 * 14 12 11 16 16 Si 1.86798 * 120.00062 * 157.93829 * 14 12 11 17 17 H 1.48497 * 109.47188 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47198 * 119.99754 * 16 14 12 19 19 H 1.48497 * 109.47081 * 239.99910 * 16 14 12 20 20 C 1.46496 * 119.99877 * 90.00141 * 11 10 9 21 21 C 1.53003 * 117.49696 * 183.23760 * 20 11 10 22 22 C 1.53000 * 117.50255 * 114.57943 * 20 11 10 23 23 N 1.34490 * 125.42184 * 179.97438 * 2 1 3 24 24 H 0.97002 * 126.47096 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47080 * 90.02604 * 1 2 3 26 26 H 1.08995 * 109.47642 * 210.02520 * 1 2 3 27 27 H 1.08999 * 109.47155 * 330.02975 * 1 2 3 28 28 H 1.08003 * 126.10503 * 179.97438 * 4 3 2 29 29 H 0.97002 * 119.99966 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.46959 * 300.00178 * 9 8 6 31 31 H 1.09000 * 109.46601 * 59.99617 * 9 8 6 32 32 H 1.09002 * 109.47166 * 299.99934 * 10 9 8 33 33 H 1.08994 * 109.47163 * 59.99740 * 10 9 8 34 34 H 0.96999 * 120.00205 * 175.91713 * 15 14 12 35 35 H 1.09007 * 115.55290 * 328.90168 * 20 11 10 36 36 H 1.08994 * 117.49898 * 359.97438 * 21 20 11 37 37 H 1.09005 * 117.49963 * 145.01723 * 21 20 11 38 38 H 1.08999 * 117.49706 * 214.97558 * 22 20 11 39 39 H 1.08996 * 117.49590 * 359.96787 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0015 6 6 4.8028 -1.4982 0.0019 7 8 5.9038 -0.9800 0.0017 8 7 4.6903 -2.8412 0.0023 9 6 5.8934 -3.6772 0.0021 10 6 5.4891 -5.1528 0.0020 11 7 6.6923 -5.9887 0.0024 12 6 7.2548 -6.3795 -1.1833 13 1 8.3277 -6.4705 -1.2679 14 6 6.4462 -6.6586 -2.2765 15 7 5.1815 -6.9750 -2.0958 16 14 7.1531 -6.5855 -4.0040 17 1 8.5879 -6.2088 -3.9362 18 1 7.0202 -7.9161 -4.6499 19 1 6.4130 -5.5731 -4.7992 20 6 7.2934 -6.4066 1.2713 21 6 8.5910 -7.2147 1.2061 22 6 7.2807 -7.9006 1.6010 23 7 2.2864 -1.0960 0.0005 24 1 1.9850 -2.0180 0.0006 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.3978 1.3723 0.0003 29 1 3.8127 -3.2544 0.0028 30 1 6.4846 -3.4628 -0.8882 31 1 6.4853 -3.4622 0.8918 32 1 4.8977 -5.3675 0.8921 33 1 4.8974 -5.3674 -0.8878 34 1 4.6017 -7.1121 -2.8612 35 1 7.1771 -5.7074 2.0995 36 1 8.9970 -7.4358 0.2191 37 1 9.3281 -7.0475 1.9915 38 1 7.1564 -8.1843 2.6461 39 1 6.8247 -8.5725 0.8740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267323274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:30 Heat of formation + Delta-G solvation = 64.694217 kcal Electronic energy + Delta-G solvation = -21166.964023 eV Core-core repulsion = 17919.017873 eV Total energy + Delta-G solvation = -3247.946150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29662 -39.04651 -37.17533 -34.92169 -33.43850 -32.72431 -32.05439 -30.83537 -28.28729 -27.04704 -24.58260 -22.93508 -21.81010 -21.36945 -20.83881 -20.33455 -19.83139 -18.57254 -16.44580 -15.89483 -15.82246 -15.68693 -15.42354 -14.76562 -14.58214 -14.00009 -13.92688 -13.78760 -13.40345 -13.08664 -12.73468 -12.71768 -12.63770 -12.01188 -11.66487 -11.13071 -10.81084 -10.80394 -10.48154 -10.39971 -10.30013 -10.21202 -9.98121 -9.81942 -9.72174 -9.36451 -8.83456 -8.59986 -8.47168 -6.73355 -5.94104 -3.54111 1.27115 2.71901 2.73599 3.26401 3.36031 3.37786 3.41460 3.46636 4.17222 4.35902 4.69842 4.84606 4.95082 5.13417 5.18516 5.19814 5.21594 5.40478 5.58748 5.69838 5.83207 5.94964 5.99648 6.11727 6.19869 6.40527 6.43816 6.45480 6.53005 6.68088 6.87484 6.97840 7.04443 7.14643 7.40034 7.64307 7.69109 7.83752 8.31748 8.35499 8.99745 9.62460 10.16961 11.02533 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.004145 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.142726 B = 6753.454847 C = 7331.568918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.231 3.769 3 N -0.497 5.497 4 C 0.064 3.936 5 C -0.081 4.081 6 C 0.587 3.413 7 O -0.530 6.530 8 N -0.717 5.717 9 C 0.099 3.901 10 C 0.136 3.864 11 N -0.547 5.547 12 C -0.258 4.258 13 H 0.070 0.930 14 C 0.011 3.989 15 N -0.885 5.885 16 Si 0.897 3.103 17 H -0.274 1.274 18 H -0.289 1.289 19 H -0.287 1.287 20 C 0.118 3.882 21 C -0.194 4.194 22 C -0.220 4.220 23 N -0.551 5.551 24 H 0.422 0.578 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.183 0.817 29 H 0.391 0.609 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 8.069 5.350 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.033 4.033 3 N -0.218 5.218 4 C -0.089 4.089 5 C -0.197 4.197 6 C 0.372 3.628 7 O -0.407 6.407 8 N -0.367 5.367 9 C -0.026 4.026 10 C 0.009 3.991 11 N -0.264 5.264 12 C -0.387 4.387 13 H 0.087 0.913 14 C -0.189 4.189 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.213 1.213 20 C 0.009 3.991 21 C -0.232 4.232 22 C -0.260 4.260 23 N -0.156 5.156 24 H 0.261 0.739 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.201 0.799 29 H 0.224 0.776 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.782 9.125 5.207 13.693 hybrid contribution 0.079 -1.592 -0.933 1.847 sum -8.703 7.533 4.274 12.278 Atomic orbital electron populations 1.20288 0.84336 1.04460 1.04035 1.23434 0.95849 0.81645 1.02348 1.70177 1.02193 1.28259 1.21157 1.22630 0.94644 0.91351 1.00321 1.21382 0.83787 0.96171 1.18375 1.16888 0.86786 0.81859 0.77248 1.90844 1.25820 1.73284 1.50710 1.46007 1.10991 1.05455 1.74267 1.22412 0.85638 0.92808 1.01754 1.21097 0.90156 0.85201 1.02652 1.43223 1.29597 1.53453 1.00105 1.19164 0.91395 1.40669 0.87476 0.91263 1.25119 0.96350 0.98132 0.99284 1.70039 1.05859 1.47141 1.29727 0.86324 0.79184 0.77382 0.84555 1.19826 1.21533 1.21338 1.21243 0.97425 0.90252 0.90170 1.23044 0.91058 1.06926 1.02196 1.23358 1.02209 1.00808 0.99666 1.43268 1.06183 1.10289 1.55904 0.73900 0.89641 0.90394 0.88767 0.79950 0.77648 0.91206 0.92740 0.95060 0.87694 0.93577 0.89441 0.88387 0.90614 0.91146 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.23 2.47 8.12 -155.62 -1.26 1.20 16 3 N -0.50 -6.75 11.20 -10.58 -0.12 -6.87 16 4 C 0.06 0.91 11.66 -17.48 -0.20 0.71 16 5 C -0.08 -1.14 7.08 -82.15 -0.58 -1.72 16 6 C 0.59 9.88 7.79 -12.82 -0.10 9.78 16 7 O -0.53 -10.83 16.90 5.20 0.09 -10.74 16 8 N -0.72 -11.39 5.55 -61.59 -0.34 -11.74 16 9 C 0.10 1.91 6.00 -4.04 -0.02 1.88 16 10 C 0.14 2.86 5.45 -4.04 -0.02 2.84 16 11 N -0.55 -12.76 2.78 -165.66 -0.46 -13.22 16 12 C -0.26 -6.63 8.63 -15.06 -0.13 -6.76 16 13 H 0.07 1.81 6.55 -52.48 -0.34 1.46 16 14 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 15 N -0.89 -23.67 11.33 55.49 0.63 -23.04 16 16 Si 0.90 20.85 29.61 -169.99 -5.03 15.82 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.12 2.42 6.56 -67.93 -0.45 1.98 16 21 C -0.19 -3.72 9.80 -26.69 -0.26 -3.98 16 22 C -0.22 -4.30 10.36 -26.69 -0.28 -4.58 16 23 N -0.55 -5.81 6.07 -7.02 -0.04 -5.86 16 24 H 0.42 3.17 8.32 -40.82 -0.34 2.84 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.18 2.40 8.06 -52.48 -0.42 1.98 16 29 H 0.39 5.05 7.72 -40.82 -0.31 4.74 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.11 2.47 5.36 -51.93 -0.28 2.20 16 34 H 0.25 6.57 8.32 -40.82 -0.34 6.23 16 35 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.10 2.05 6.37 -51.93 -0.33 1.72 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -31.52 333.71 -8.66 -40.18 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.39 Total: 8.96 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -3.02 Total: 1.48 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.33 Total: -60.73 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.52 -8.66 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267323274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.875 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds