Wall clock time and date at job start Mon Mar 30 2020 23:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30863 * 125.41928 * 2 1 4 4 C 1.33318 * 109.68665 * 179.97438 * 3 2 1 5 5 C 1.36659 * 107.78525 * 359.97438 * 4 3 2 6 6 C 1.46763 * 126.84645 * 179.97438 * 5 4 3 7 7 O 1.21687 * 119.99842 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00533 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00529 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47296 * 180.02562 * 9 8 6 11 11 N 1.46504 * 109.46924 * 180.02562 * 10 9 8 12 12 C 1.36935 * 119.99703 * 269.99460 * 11 10 9 13 13 H 1.08004 * 119.99524 * 144.93157 * 12 11 10 14 14 C 1.38806 * 120.00247 * 324.93172 * 12 11 10 15 15 N 1.31616 * 120.00040 * 337.93215 * 14 12 11 16 16 Si 1.86798 * 120.00062 * 157.93829 * 14 12 11 17 17 H 1.48497 * 109.47188 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47198 * 119.99754 * 16 14 12 19 19 H 1.48497 * 109.47081 * 239.99910 * 16 14 12 20 20 C 1.46496 * 119.99877 * 90.00141 * 11 10 9 21 21 C 1.53003 * 117.49696 * 183.23760 * 20 11 10 22 22 C 1.53000 * 117.50255 * 114.57943 * 20 11 10 23 23 N 1.34490 * 125.42184 * 179.97438 * 2 1 3 24 24 H 0.97002 * 126.47096 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47080 * 90.02604 * 1 2 3 26 26 H 1.08995 * 109.47642 * 210.02520 * 1 2 3 27 27 H 1.08999 * 109.47155 * 330.02975 * 1 2 3 28 28 H 1.08003 * 126.10503 * 179.97438 * 4 3 2 29 29 H 0.97002 * 119.99966 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.46959 * 300.00178 * 9 8 6 31 31 H 1.09000 * 109.46601 * 59.99617 * 9 8 6 32 32 H 1.09002 * 109.47166 * 299.99934 * 10 9 8 33 33 H 1.08994 * 109.47163 * 59.99740 * 10 9 8 34 34 H 0.96999 * 120.00205 * 175.91713 * 15 14 12 35 35 H 1.09007 * 115.55290 * 328.90168 * 20 11 10 36 36 H 1.08994 * 117.49898 * 359.97438 * 21 20 11 37 37 H 1.09005 * 117.49963 * 145.01723 * 21 20 11 38 38 H 1.08999 * 117.49706 * 214.97558 * 22 20 11 39 39 H 1.08996 * 117.49590 * 359.96787 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0015 6 6 4.8028 -1.4982 0.0019 7 8 5.9038 -0.9800 0.0017 8 7 4.6903 -2.8412 0.0023 9 6 5.8934 -3.6772 0.0021 10 6 5.4891 -5.1528 0.0020 11 7 6.6923 -5.9887 0.0024 12 6 7.2548 -6.3795 -1.1833 13 1 8.3277 -6.4705 -1.2679 14 6 6.4462 -6.6586 -2.2765 15 7 5.1815 -6.9750 -2.0958 16 14 7.1531 -6.5855 -4.0040 17 1 8.5879 -6.2088 -3.9362 18 1 7.0202 -7.9161 -4.6499 19 1 6.4130 -5.5731 -4.7992 20 6 7.2934 -6.4066 1.2713 21 6 8.5910 -7.2147 1.2061 22 6 7.2807 -7.9006 1.6010 23 7 2.2864 -1.0960 0.0005 24 1 1.9850 -2.0180 0.0006 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.3978 1.3723 0.0003 29 1 3.8127 -3.2544 0.0028 30 1 6.4846 -3.4628 -0.8882 31 1 6.4853 -3.4622 0.8918 32 1 4.8977 -5.3675 0.8921 33 1 4.8974 -5.3674 -0.8878 34 1 4.6017 -7.1121 -2.8612 35 1 7.1771 -5.7074 2.0995 36 1 8.9970 -7.4358 0.2191 37 1 9.3281 -7.0475 1.9915 38 1 7.1564 -8.1843 2.6461 39 1 6.8247 -8.5725 0.8740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267323274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:29 Heat of formation + Delta-G solvation = 43.529281 kcal Electronic energy + Delta-G solvation = -21167.881804 eV Core-core repulsion = 17919.017873 eV Total energy + Delta-G solvation = -3248.863930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.27491 -40.44051 -38.84698 -36.43497 -35.09958 -33.81274 -32.98116 -32.48824 -29.72605 -28.17337 -26.35789 -24.25261 -23.25083 -22.88657 -21.90934 -21.65345 -21.36181 -19.75540 -18.20184 -17.36898 -17.10319 -16.97835 -16.84554 -16.30106 -16.07034 -15.59461 -15.10356 -14.97196 -14.49091 -14.44748 -14.28139 -13.79711 -13.45013 -13.30060 -13.21408 -12.97631 -12.65296 -12.52526 -12.15095 -11.94935 -11.71661 -11.62142 -11.41118 -11.25920 -11.15385 -10.92375 -10.53420 -10.25127 -9.54813 -8.60915 -7.87867 -5.51184 0.19441 1.39659 1.45806 1.53994 1.72979 1.78295 2.07359 2.23272 2.46809 3.10766 3.36530 3.39079 3.52773 3.79949 4.04276 4.28191 4.28742 4.32654 4.36230 4.48840 4.56345 4.62673 4.76195 4.76839 4.84357 4.93676 5.01729 5.12407 5.15184 5.24948 5.38024 5.44614 5.53452 5.63240 5.72015 6.23782 6.37348 6.43027 6.84300 7.02477 7.09811 7.77244 8.26145 9.04368 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018223 B = 0.004145 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.142726 B = 6753.454847 C = 7331.568918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.249 3.751 3 N -0.527 5.527 4 C 0.059 3.941 5 C -0.100 4.100 6 C 0.590 3.410 7 O -0.573 6.573 8 N -0.707 5.707 9 C 0.120 3.880 10 C 0.144 3.856 11 N -0.565 5.565 12 C -0.262 4.262 13 H 0.059 0.941 14 C -0.028 4.028 15 N -0.907 5.907 16 Si 0.946 3.054 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.098 3.902 21 C -0.185 4.185 22 C -0.210 4.210 23 N -0.539 5.539 24 H 0.437 0.563 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.182 0.818 29 H 0.407 0.593 30 H 0.036 0.964 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 8.225 6.372 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 N -0.248 5.248 4 C -0.095 4.095 5 C -0.216 4.216 6 C 0.378 3.622 7 O -0.453 6.453 8 N -0.357 5.357 9 C -0.006 4.006 10 C 0.017 3.983 11 N -0.282 5.282 12 C -0.392 4.392 13 H 0.077 0.923 14 C -0.226 4.226 15 N -0.551 5.551 16 Si 0.774 3.226 17 H -0.197 1.197 18 H -0.217 1.217 19 H -0.216 1.216 20 C -0.010 4.010 21 C -0.223 4.223 22 C -0.251 4.251 23 N -0.146 5.146 24 H 0.279 0.721 25 H 0.120 0.880 26 H 0.124 0.876 27 H 0.119 0.881 28 H 0.200 0.800 29 H 0.243 0.757 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.262 9.245 6.244 15.158 hybrid contribution 0.464 -1.613 -1.198 2.062 sum -9.798 7.633 5.046 13.406 Atomic orbital electron populations 1.20563 0.80737 1.06220 1.05565 1.24354 0.97518 0.80775 0.98845 1.70220 1.01986 1.29703 1.22896 1.22787 0.95343 0.91591 0.99817 1.20850 0.84227 0.95655 1.20898 1.17153 0.87137 0.81865 0.76094 1.90815 1.27721 1.74007 1.52715 1.45759 1.10837 1.05133 1.74003 1.21920 0.86364 0.92304 1.00024 1.20965 0.89463 0.85645 1.02239 1.43417 1.30128 1.54181 1.00503 1.19255 0.91139 1.39972 0.88862 0.92303 1.25622 0.96763 0.98645 1.01597 1.70115 1.06500 1.48337 1.30131 0.85557 0.78529 0.76926 0.81559 1.19744 1.21660 1.21590 1.21550 0.98368 0.91278 0.89781 1.23055 0.91329 1.05826 1.02094 1.23262 1.02056 0.99233 1.00564 1.43184 1.04766 1.11290 1.55338 0.72109 0.88041 0.87599 0.88052 0.80046 0.75736 0.94521 0.92906 0.93348 0.89962 0.93759 0.87011 0.90740 0.87214 0.87851 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.51 71.23 0.75 0.13 16 2 C 0.25 4.71 8.12 138.20 1.12 5.83 16 3 N -0.53 -13.62 11.20 -187.40 -2.10 -15.72 16 4 C 0.06 1.65 11.66 84.10 0.98 2.63 16 5 C -0.10 -2.75 7.08 40.01 0.28 -2.47 16 6 C 0.59 19.89 7.79 86.47 0.67 20.57 16 7 O -0.57 -23.96 16.90 -4.31 -0.07 -24.03 16 8 N -0.71 -22.17 5.55 -467.00 -2.59 -24.76 16 9 C 0.12 4.65 6.00 86.38 0.52 5.17 16 10 C 0.14 6.02 5.45 86.38 0.47 6.49 16 11 N -0.56 -26.33 2.78 -678.03 -1.88 -28.22 16 12 C -0.26 -13.67 8.63 84.03 0.72 -12.95 16 13 H 0.06 3.14 6.55 -2.91 -0.02 3.12 16 14 C -0.03 -1.50 4.96 84.86 0.42 -1.07 16 15 N -0.91 -49.01 11.33 21.65 0.25 -48.77 16 16 Si 0.95 43.44 29.61 68.60 2.03 45.47 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 20 C 0.10 3.89 6.56 44.99 0.30 4.19 16 21 C -0.18 -6.81 9.80 30.62 0.30 -6.51 16 22 C -0.21 -7.92 10.36 30.62 0.32 -7.60 16 23 N -0.54 -10.27 6.07 -176.12 -1.07 -11.34 16 24 H 0.44 5.43 8.32 -92.71 -0.77 4.66 16 25 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 29 H 0.41 10.05 7.72 -92.71 -0.72 9.33 16 30 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.08 3.91 5.36 -2.39 -0.01 3.89 16 34 H 0.25 13.20 8.32 -92.71 -0.77 12.43 16 35 H 0.11 3.87 8.14 -2.38 -0.02 3.85 16 36 H 0.07 3.11 6.37 -2.39 -0.02 3.09 16 37 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -69.25 333.71 1.01 -68.24 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.40 Total: 24.73 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.85 Total: 14.41 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.40 Total: -128.81 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.07 Total: -24.03 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.25 1.01 -68.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267323274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.765 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds