Wall clock time and date at job start Tue Mar 31 2020 00:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21475 * 119.99770 * 359.97438 * 8 7 6 10 10 C 1.48459 * 119.99975 * 180.02562 * 8 7 6 11 11 C 1.39532 * 120.54582 * 180.02562 * 10 8 7 12 12 C 1.38759 * 118.26268 * 180.02562 * 11 10 8 13 13 N 1.32214 * 119.14622 * 359.97438 * 12 11 10 14 14 C 1.31879 * 121.03708 * 359.97438 * 13 12 11 15 15 N 1.31590 * 121.91512 * 359.71492 * 14 13 12 16 16 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 17 17 C 1.36936 * 120.00314 * 274.99849 * 16 4 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 4 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 26 26 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 27 27 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 29 29 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 31 31 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 32 32 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 33 33 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 34 34 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.87106 * 0.02562 * 11 10 8 36 36 H 1.07999 * 120.43144 * 180.02562 * 12 11 10 37 37 H 1.07992 * 119.04175 * 180.02562 * 14 13 12 38 38 H 0.97000 * 120.00040 * 94.99981 * 16 4 2 39 39 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0427 0.7945 5.0287 10 6 2.3976 -0.7698 6.1243 11 6 2.0853 -0.2895 7.3966 12 6 2.6664 -0.9091 8.4937 13 7 3.4891 -1.9255 8.2984 14 6 3.7621 -2.3552 7.0818 15 7 3.2298 -1.8022 6.0129 16 7 3.5050 -0.7217 1.2490 17 6 4.1892 -1.6935 0.5688 18 1 3.6489 -2.4594 0.0323 19 6 5.5773 -1.6942 0.5690 20 7 6.2350 -2.6315 -0.0803 21 14 6.5120 -0.3700 1.4975 22 1 6.7661 0.7817 0.5951 23 1 5.7067 0.0809 2.6609 24 1 7.8062 -0.9198 1.9748 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8184 1.0503 2.4548 33 1 0.4437 -0.0768 2.5444 34 1 2.7227 -1.3674 3.6011 35 1 1.4089 0.5427 7.5241 36 1 2.4488 -0.5662 9.4945 37 1 4.4384 -3.1882 6.9595 38 1 3.9903 -0.0337 1.7305 39 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268220581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:35 Heat of formation + Delta-G solvation = 21.941772 kcal Electronic energy + Delta-G solvation = -21706.232058 eV Core-core repulsion = 18456.432023 eV Total energy + Delta-G solvation = -3249.800035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29892 -39.38094 -37.51913 -34.34381 -33.64177 -33.28971 -32.25550 -30.83488 -28.08357 -26.75416 -25.57065 -24.55303 -23.61282 -22.27381 -20.91131 -19.12285 -18.24314 -17.83862 -17.49762 -15.97897 -15.66424 -15.65542 -15.53710 -14.97851 -14.34869 -14.28666 -13.89163 -13.80681 -13.65094 -13.09729 -12.98463 -12.72556 -12.45452 -11.61816 -11.36182 -11.15239 -11.13193 -11.04560 -10.97179 -10.72369 -10.52434 -10.36768 -10.17335 -9.95707 -9.87065 -9.63207 -9.45662 -8.97701 -8.84687 -7.34689 -5.82232 -3.18849 0.34616 0.72861 2.73997 3.06533 3.33611 3.37166 3.42461 3.70445 3.83915 3.92120 4.45570 4.54171 4.71637 4.80832 5.12349 5.18250 5.32293 5.35843 5.44277 5.53714 5.63226 5.66060 5.78168 5.96126 5.98609 6.05735 6.19878 6.24351 6.31427 6.43373 6.58688 6.59724 6.69348 6.85593 6.93488 7.59463 7.82446 7.92447 8.21241 8.36091 9.13476 9.85965 10.04438 11.35713 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.006242 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.229231 B = 4484.398850 C = 5973.927725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.175 3.825 5 H 0.064 0.936 6 C 0.103 3.897 7 N -0.688 5.688 8 C 0.562 3.438 9 O -0.538 6.538 10 C 0.136 3.864 11 C -0.174 4.174 12 C 0.146 3.854 13 N -0.510 5.510 14 C 0.296 3.704 15 N -0.488 5.488 16 N -0.744 5.744 17 C -0.244 4.244 18 H 0.092 0.908 19 C 0.011 3.989 20 N -0.930 5.930 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.278 1.278 24 H -0.291 1.291 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.422 0.578 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.204 0.796 38 H 0.362 0.638 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.924 4.557 12.373 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.020 4.020 7 N -0.339 5.339 8 C 0.345 3.655 9 O -0.415 6.415 10 C -0.013 4.013 11 C -0.196 4.196 12 C -0.021 4.021 13 N -0.224 5.224 14 C 0.008 3.992 15 N -0.204 5.204 16 N -0.387 5.387 17 C -0.374 4.374 18 H 0.110 0.890 19 C -0.185 4.185 20 N -0.577 5.577 21 Si 0.710 3.290 22 H -0.212 1.212 23 H -0.204 1.204 24 H -0.218 1.218 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.260 0.740 35 H 0.177 0.823 36 H 0.192 0.808 37 H 0.221 0.779 38 H 0.195 0.805 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.771 4.236 12.117 16.132 hybrid contribution 0.669 1.252 0.623 1.550 sum -9.103 5.487 12.740 16.592 Atomic orbital electron populations 1.21920 0.96430 1.01239 1.01088 1.21696 0.93872 0.96891 1.00785 1.21790 1.02122 0.95917 1.00144 1.20486 0.85166 0.97458 0.90362 0.91828 1.22021 0.97942 0.98012 0.84072 1.45957 1.47270 1.35972 1.04730 1.17819 0.81578 0.83230 0.82911 1.90762 1.36290 1.28053 1.86398 1.21772 0.93015 0.92036 0.94439 1.22974 1.01402 1.02255 0.93013 1.23338 0.89517 0.89583 0.99692 1.68383 1.14488 1.12977 1.26598 1.25088 0.94671 0.97120 0.82327 1.68456 1.08010 1.08440 1.35509 1.42806 1.00260 1.33387 1.62218 1.19023 0.89378 1.04555 1.24450 0.89030 1.24625 0.96155 0.97874 0.99887 1.69692 1.07075 1.34625 1.46358 0.86637 0.79964 0.82336 0.80062 1.21195 1.20391 1.21778 0.92975 0.93310 0.92963 0.90252 0.91924 0.93792 0.93507 0.90998 0.90747 0.73959 0.82266 0.80772 0.77934 0.80492 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.84 37.16 0.33 -1.60 16 2 C -0.11 -1.77 2.91 -90.62 -0.26 -2.03 16 3 C -0.14 -2.21 8.69 37.16 0.32 -1.89 16 4 C 0.18 3.07 2.27 -67.93 -0.15 2.92 16 5 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 6 C 0.10 1.64 4.51 -4.05 -0.02 1.62 16 7 N -0.69 -11.35 5.38 -61.06 -0.33 -11.67 16 8 C 0.56 9.09 7.83 -12.05 -0.09 9.00 16 9 O -0.54 -9.48 16.43 5.39 0.09 -9.39 16 10 C 0.14 1.94 6.79 -82.63 -0.56 1.38 16 11 C -0.17 -1.95 9.72 -38.91 -0.38 -2.33 16 12 C 0.15 1.40 11.31 -17.19 -0.19 1.21 16 13 N -0.51 -5.87 10.42 -14.60 -0.15 -6.02 16 14 C 0.30 3.60 12.28 -92.26 -1.13 2.47 16 15 N -0.49 -7.07 9.70 -11.14 -0.11 -7.17 16 16 N -0.74 -16.06 3.60 -53.43 -0.19 -16.25 16 17 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 19 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 20 N -0.93 -28.23 13.97 55.49 0.78 -27.45 16 21 Si 0.88 21.64 27.74 -169.99 -4.72 16.93 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.52 6.51 56.52 0.37 -6.15 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.06 1.11 7.61 -51.93 -0.39 0.72 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.67 6.32 -51.93 -0.33 0.34 16 32 H 0.07 1.17 6.17 -51.92 -0.32 0.85 16 33 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 34 H 0.42 7.39 7.52 -40.82 -0.31 7.09 16 35 H 0.16 1.54 7.74 -52.49 -0.41 1.13 16 36 H 0.18 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -31.48 326.43 -7.34 -38.82 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.22 Total: 12.91 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.40 Total: 4.38 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.01 Total: -68.57 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.72 Total: 16.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.48 -7.34 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268220581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.760 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds