Wall clock time and date at job start Tue Mar 31 2020 00:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21475 * 119.99770 * 359.97438 * 8 7 6 10 10 C 1.48459 * 119.99975 * 180.02562 * 8 7 6 11 11 C 1.39532 * 120.54582 * 180.02562 * 10 8 7 12 12 C 1.38759 * 118.26268 * 180.02562 * 11 10 8 13 13 N 1.32214 * 119.14622 * 359.97438 * 12 11 10 14 14 C 1.31879 * 121.03708 * 359.97438 * 13 12 11 15 15 N 1.31590 * 121.91512 * 359.71492 * 14 13 12 16 16 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 17 17 C 1.36936 * 120.00314 * 274.99849 * 16 4 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 4 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 26 26 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 27 27 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 29 29 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 31 31 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 32 32 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 33 33 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 34 34 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 35 35 H 1.07996 * 120.87106 * 0.02562 * 11 10 8 36 36 H 1.07999 * 120.43144 * 180.02562 * 12 11 10 37 37 H 1.07992 * 119.04175 * 180.02562 * 14 13 12 38 38 H 0.97000 * 120.00040 * 94.99981 * 16 4 2 39 39 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0427 0.7945 5.0287 10 6 2.3976 -0.7698 6.1243 11 6 2.0853 -0.2895 7.3966 12 6 2.6664 -0.9091 8.4937 13 7 3.4891 -1.9255 8.2984 14 6 3.7621 -2.3552 7.0818 15 7 3.2298 -1.8022 6.0129 16 7 3.5050 -0.7217 1.2490 17 6 4.1892 -1.6935 0.5688 18 1 3.6489 -2.4594 0.0323 19 6 5.5773 -1.6942 0.5690 20 7 6.2350 -2.6315 -0.0803 21 14 6.5120 -0.3700 1.4975 22 1 6.7661 0.7817 0.5951 23 1 5.7067 0.0809 2.6609 24 1 7.8062 -0.9198 1.9748 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.8184 1.0503 2.4548 33 1 0.4437 -0.0768 2.5444 34 1 2.7227 -1.3674 3.6011 35 1 1.4089 0.5427 7.5241 36 1 2.4488 -0.5662 9.4945 37 1 4.4384 -3.1882 6.9595 38 1 3.9903 -0.0337 1.7305 39 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268220581.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:35 Heat of formation + Delta-G solvation = 0.239837 kcal Electronic energy + Delta-G solvation = -21707.173124 eV Core-core repulsion = 18456.432023 eV Total energy + Delta-G solvation = -3250.741101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24884 -40.61162 -38.94134 -35.51634 -35.13960 -34.70103 -33.15806 -32.74273 -29.48481 -27.93866 -26.76978 -25.51554 -25.09169 -23.89034 -22.06741 -20.40338 -19.98438 -19.08891 -18.67474 -17.28450 -17.01047 -16.66430 -16.48279 -16.47728 -15.78301 -15.56064 -15.23922 -14.95503 -14.80184 -14.66216 -14.36074 -14.23493 -13.97129 -13.01400 -12.84826 -12.72081 -12.63933 -12.21416 -12.16207 -12.03023 -11.95677 -11.80684 -11.63166 -11.62516 -11.22389 -10.93781 -10.85060 -10.41634 -10.13893 -9.29807 -7.99778 -5.31999 -0.63561 -0.10555 1.36611 1.36823 1.43815 1.60131 1.91585 2.47609 2.75289 2.84601 3.14734 3.32549 3.49042 3.57546 3.75879 3.83087 4.01703 4.18967 4.25324 4.41501 4.46387 4.51423 4.58398 4.67532 4.87821 4.90088 5.07213 5.11083 5.18919 5.22613 5.25322 5.38726 5.56779 5.61280 5.73830 5.82365 6.23412 6.34945 6.84978 6.97666 7.09321 7.84123 8.02354 9.21684 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.006242 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.229231 B = 4484.398850 C = 5973.927725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.174 3.826 5 H 0.056 0.944 6 C 0.112 3.888 7 N -0.695 5.695 8 C 0.562 3.438 9 O -0.555 6.555 10 C 0.108 3.892 11 C -0.165 4.165 12 C 0.159 3.841 13 N -0.516 5.516 14 C 0.288 3.712 15 N -0.517 5.517 16 N -0.743 5.743 17 C -0.215 4.215 18 H 0.063 0.937 19 C -0.054 4.054 20 N -0.980 5.980 21 Si 0.943 3.057 22 H -0.285 1.285 23 H -0.260 1.260 24 H -0.300 1.300 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.416 0.584 35 H 0.176 0.824 36 H 0.220 0.780 37 H 0.223 0.777 38 H 0.362 0.638 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 6.206 14.572 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.196 4.196 4 C 0.065 3.935 5 H 0.074 0.926 6 C -0.011 4.011 7 N -0.345 5.345 8 C 0.346 3.654 9 O -0.434 6.434 10 C -0.039 4.039 11 C -0.188 4.188 12 C -0.008 4.008 13 N -0.230 5.230 14 C 0.001 3.999 15 N -0.234 5.234 16 N -0.386 5.386 17 C -0.346 4.346 18 H 0.081 0.919 19 C -0.246 4.246 20 N -0.631 5.631 21 Si 0.772 3.228 22 H -0.211 1.211 23 H -0.185 1.185 24 H -0.227 1.227 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.253 0.747 35 H 0.193 0.807 36 H 0.237 0.763 37 H 0.239 0.761 38 H 0.195 0.805 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.275 5.915 14.326 19.166 hybrid contribution 0.996 0.702 -0.020 1.218 sum -10.279 6.617 14.306 18.818 Atomic orbital electron populations 1.21848 0.93504 1.02023 1.02521 1.21572 0.96287 0.96692 0.98292 1.21759 1.00351 0.95722 1.01803 1.20656 0.82712 0.97750 0.92341 0.92635 1.21941 0.98835 0.97476 0.82882 1.46007 1.47381 1.35912 1.05234 1.18101 0.81126 0.82875 0.83256 1.90738 1.37102 1.28797 1.86743 1.21662 0.94409 0.93106 0.94733 1.23218 1.01132 1.02333 0.92144 1.24084 0.87595 0.88059 1.01102 1.68486 1.14921 1.13604 1.26030 1.25502 0.94729 0.97489 0.82222 1.68396 1.08986 1.09198 1.36801 1.42742 1.01989 1.32246 1.61589 1.18954 0.89297 1.03915 1.22452 0.91901 1.25270 0.97254 1.00262 1.01783 1.69853 1.06988 1.37178 1.49116 0.85596 0.78291 0.79597 0.79290 1.21149 1.18517 1.22700 0.91575 0.91824 0.92583 0.93034 0.94602 0.92071 0.91942 0.90934 0.88868 0.74684 0.80682 0.76310 0.76133 0.80456 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.84 71.98 0.64 -2.68 16 2 C -0.11 -3.31 2.91 -10.79 -0.03 -3.34 16 3 C -0.14 -4.09 8.69 71.98 0.63 -3.46 16 4 C 0.17 5.99 2.27 44.99 0.10 6.09 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 6 C 0.11 3.38 4.51 86.38 0.39 3.77 16 7 N -0.70 -22.31 5.38 -465.39 -2.50 -24.82 16 8 C 0.56 17.53 7.83 86.97 0.68 18.21 16 9 O -0.56 -18.63 16.43 -3.64 -0.06 -18.69 16 10 C 0.11 2.94 6.79 41.99 0.29 3.22 16 11 C -0.17 -3.29 9.72 22.71 0.22 -3.07 16 12 C 0.16 2.51 11.31 84.76 0.96 3.47 16 13 N -0.52 -10.58 10.42 -200.09 -2.09 -12.67 16 14 C 0.29 6.62 12.28 180.92 2.22 8.84 16 15 N -0.52 -14.55 9.70 -189.15 -1.84 -16.38 16 16 N -0.74 -32.06 3.60 -322.95 -1.16 -33.22 16 17 C -0.22 -11.54 10.41 84.03 0.87 -10.66 16 18 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 19 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 20 N -0.98 -61.45 13.97 21.65 0.30 -61.14 16 21 Si 0.94 45.45 27.74 68.60 1.90 47.35 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.26 -11.59 6.51 99.48 0.65 -10.94 16 24 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 25 H 0.07 1.39 6.54 -2.39 -0.02 1.37 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.23 7.61 -2.39 -0.02 1.21 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.63 6.32 -2.39 -0.02 1.62 16 32 H 0.07 2.20 6.17 -2.38 -0.01 2.19 16 33 H 0.09 2.48 6.71 -2.39 -0.02 2.47 16 34 H 0.42 14.50 7.52 -92.71 -0.70 13.80 16 35 H 0.18 2.86 7.74 -2.91 -0.02 2.84 16 36 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.36 15.72 5.66 -92.71 -0.52 15.20 16 39 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.34 326.43 1.79 -67.55 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -0.20 Total: 34.25 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 7.43 Total: 17.77 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -7.29 Total: -148.23 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.06 Total: -18.69 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.90 Total: 47.35 kcal Total: -69.34 1.79 -67.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268220581.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.791 kcal (2) G-P(sol) polarization free energy of solvation -69.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds