Wall clock time and date at job start Mon Mar 30 2020 23:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30496 * 125.65406 * 2 1 4 4 C 1.34130 * 109.26014 * 179.97438 * 3 2 1 5 5 C 1.34674 * 108.01710 * 359.97438 * 4 3 2 6 6 N 1.35054 * 125.64689 * 180.22739 * 2 1 3 7 7 C 1.46496 * 126.39961 * 0.06931 * 6 2 1 8 8 C 1.50700 * 109.47139 * 85.14404 * 7 6 2 9 9 O 1.21285 * 119.99755 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99949 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99871 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47255 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.96627 * 53.31629 * 12 11 10 14 14 C 1.53951 * 113.77072 * 185.00261 * 12 11 10 15 15 C 1.53944 * 86.28935 * 137.90731 * 14 12 11 16 16 N 1.47582 * 86.11855 * 336.39084 * 15 14 12 17 17 C 1.36939 * 134.49014 * 204.64179 * 16 15 14 18 18 H 1.07999 * 119.99401 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00108 * 0.02562 * 17 16 15 20 20 N 1.31618 * 120.00267 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46916 * 59.99180 * 21 19 17 23 23 H 1.48490 * 109.47571 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46956 * 300.00003 * 21 19 17 25 25 H 1.09007 * 109.47054 * 90.02602 * 1 2 3 26 26 H 1.08994 * 109.47211 * 210.02867 * 1 2 3 27 27 H 1.09000 * 109.47000 * 330.02931 * 1 2 3 28 28 H 1.07997 * 125.98942 * 179.97438 * 4 3 2 29 29 H 1.08002 * 126.58669 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47200 * 205.15089 * 7 6 2 31 31 H 1.09002 * 109.47024 * 325.14755 * 7 6 2 32 32 H 0.96999 * 119.99907 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47322 * 300.00243 * 11 10 8 34 34 H 1.09002 * 109.47266 * 60.00132 * 11 10 8 35 35 H 1.09006 * 113.73625 * 252.25033 * 14 12 11 36 36 H 1.08988 * 113.74178 * 23.44670 * 14 12 11 37 37 H 1.08998 * 113.77241 * 90.69420 * 15 14 12 38 38 H 1.09004 * 113.76552 * 222.08962 * 15 14 12 39 39 H 0.97003 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5926 -0.6644 0.0015 6 7 2.2941 -1.0975 -0.0044 7 6 1.8425 -2.4911 -0.0113 8 6 1.5747 -2.9253 -1.4293 9 8 1.7447 -2.1473 -2.3441 10 7 1.1471 -4.1784 -1.6810 11 6 0.8873 -4.6006 -3.0596 12 6 0.4156 -6.0560 -3.0669 13 1 -0.4311 -6.2320 -2.4034 14 6 0.2296 -6.6410 -4.4787 15 6 0.8978 -7.9148 -3.9303 16 7 1.5082 -7.0362 -2.9137 17 6 2.6356 -7.1035 -2.1392 18 1 2.8656 -6.3044 -1.4500 19 6 3.4825 -8.1986 -2.2401 20 7 3.2018 -9.1725 -3.0797 21 14 5.0200 -8.2907 -1.1832 22 1 4.6368 -8.2642 0.2513 23 1 5.7482 -9.5509 -1.4774 24 1 5.8969 -7.1302 -1.4827 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 4.4099 1.3410 0.0003 29 1 4.4777 -1.2833 0.0018 30 1 2.6150 -3.1255 0.4232 31 1 0.9277 -2.5795 0.5747 32 1 1.0115 -4.8006 -0.9494 33 1 0.1147 -3.9664 -3.4943 34 1 1.8022 -4.5119 -3.6454 35 1 -0.8137 -6.7800 -4.7622 36 1 0.8140 -6.1319 -5.2451 37 1 0.1937 -8.6385 -3.5199 38 1 1.6190 -8.3620 -4.6145 39 1 3.7935 -9.9380 -3.1498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269342869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:54 Heat of formation + Delta-G solvation = 83.598816 kcal Electronic energy + Delta-G solvation = -21538.571462 eV Core-core repulsion = 18291.445078 eV Total energy + Delta-G solvation = -3247.126385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.12042 -39.50643 -38.01000 -34.30366 -33.98302 -32.28501 -31.76208 -29.12017 -27.99998 -27.10415 -26.45738 -23.46508 -22.41083 -21.39511 -20.82373 -19.76157 -19.17207 -17.63272 -17.23064 -16.60092 -15.69240 -15.50362 -15.12515 -15.00495 -14.34926 -14.11208 -13.78760 -13.68576 -13.38375 -13.16383 -13.00845 -12.72934 -12.47006 -12.38743 -11.90936 -11.52006 -11.22340 -11.11119 -10.82615 -10.66801 -10.34227 -10.04603 -9.97021 -9.85913 -9.64563 -9.31259 -8.89506 -8.80737 -8.29848 -6.99749 -5.85990 -3.19166 1.97766 2.58713 2.60832 3.19214 3.29193 3.33474 3.36688 3.39049 4.32791 4.45329 4.51767 4.64043 4.75920 4.82690 5.03193 5.23248 5.29082 5.43333 5.44595 5.51991 5.58069 5.71390 5.80114 5.82498 5.94921 6.20033 6.27525 6.30761 6.51235 6.56176 6.69771 6.77855 7.12795 7.14530 7.31103 7.49440 7.60941 7.88385 8.12314 8.25369 8.93566 9.61120 10.49313 11.30492 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.004569 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.915132 B = 6126.963140 C = 7236.658827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.216 3.784 3 N -0.495 5.495 4 C -0.030 4.030 5 C -0.048 4.048 6 N -0.439 5.439 7 C 0.082 3.918 8 C 0.492 3.508 9 O -0.530 6.530 10 N -0.708 5.708 11 C 0.124 3.876 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.156 4.156 15 C 0.159 3.841 16 N -0.602 5.602 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.918 5.918 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.285 1.285 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.404 0.596 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 10.864 6.208 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 N -0.215 5.215 4 C -0.177 4.177 5 C -0.181 4.181 6 N -0.122 5.122 7 C -0.045 4.045 8 C 0.275 3.725 9 O -0.407 6.407 10 N -0.359 5.359 11 C 0.000 4.000 12 C 0.018 3.982 13 H 0.068 0.932 14 C -0.195 4.195 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.212 1.212 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.186 0.814 29 H 0.190 0.810 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.239 0.761 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.092 0.908 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.180 11.915 5.640 14.559 hybrid contribution 1.307 -1.533 0.979 2.240 sum -4.873 10.382 6.619 13.242 Atomic orbital electron populations 1.20174 0.85269 1.03504 1.03695 1.23200 0.95566 0.81218 1.04619 1.70210 1.02321 1.28099 1.20822 1.22189 0.94721 0.92656 1.08130 1.22681 0.86801 0.96963 1.11618 1.44822 1.06795 1.05969 1.54628 1.21714 1.04206 0.81756 0.96802 1.20572 0.78294 0.82880 0.90712 1.90766 1.51286 1.52736 1.45874 1.45910 1.66882 1.12249 1.10836 1.21815 1.00980 0.95627 0.81580 1.22509 0.91649 0.88593 0.95455 0.93234 1.23773 0.99419 1.00321 0.95942 1.22202 0.93417 0.90985 0.90032 1.46062 1.20661 1.19383 1.46779 1.18834 0.96692 1.03542 1.16024 0.90593 1.24761 0.98999 0.96707 0.99715 1.69799 1.38308 1.09782 1.38534 0.86288 0.83038 0.77145 0.79779 1.21242 1.21451 1.21163 0.90013 0.91177 0.89279 0.81408 0.80991 0.85837 0.86249 0.76136 0.92032 0.90860 0.92738 0.90499 0.95495 0.90796 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.19 36.01 0.37 -0.32 16 2 C 0.22 3.03 7.89 -155.41 -1.23 1.80 16 3 N -0.50 -7.79 11.25 -10.81 -0.12 -7.91 16 4 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 5 C -0.05 -0.64 11.58 -16.56 -0.19 -0.84 16 6 N -0.44 -5.84 2.24 -115.18 -0.26 -6.10 16 7 C 0.08 0.89 6.37 -5.20 -0.03 0.86 16 8 C 0.49 7.25 7.90 -10.99 -0.09 7.17 16 9 O -0.53 -10.14 16.42 5.55 0.09 -10.05 16 10 N -0.71 -10.30 5.53 -60.30 -0.33 -10.64 16 11 C 0.12 2.07 5.54 -4.05 -0.02 2.05 16 12 C 0.13 2.23 4.33 -66.86 -0.29 1.94 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.16 -2.69 7.86 -25.80 -0.20 -2.89 16 15 C 0.16 3.49 7.51 -2.98 -0.02 3.46 16 16 N -0.60 -13.89 3.57 -170.74 -0.61 -14.50 16 17 C -0.22 -5.69 10.51 -15.06 -0.16 -5.85 16 18 H 0.08 1.82 7.80 -52.49 -0.41 1.41 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 20 N -0.92 -26.08 11.38 55.49 0.63 -25.45 16 21 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.54 7.17 -51.93 -0.37 0.17 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 30 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.12 0.89 7.21 -51.93 -0.37 0.51 16 32 H 0.40 5.27 8.47 -40.82 -0.35 4.92 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.33 8.10 -51.94 -0.42 0.91 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.83 7.15 -51.93 -0.37 1.46 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -34.30 333.79 -8.43 -42.72 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.66 Total: 4.28 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -2.17 Total: 6.52 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.69 Total: -64.60 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.30 -8.43 -42.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269342869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.322 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds