Wall clock time and date at job start Mon Mar 30 2020 23:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30496 * 125.65406 * 2 1 4 4 C 1.34130 * 109.26014 * 179.97438 * 3 2 1 5 5 C 1.34674 * 108.01710 * 359.97438 * 4 3 2 6 6 N 1.35054 * 125.64689 * 180.22739 * 2 1 3 7 7 C 1.46496 * 126.39961 * 0.06931 * 6 2 1 8 8 C 1.50700 * 109.47139 * 85.14404 * 7 6 2 9 9 O 1.21285 * 119.99755 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99949 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99871 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47255 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.96627 * 53.31629 * 12 11 10 14 14 C 1.53951 * 113.77072 * 185.00261 * 12 11 10 15 15 C 1.53944 * 86.28935 * 137.90731 * 14 12 11 16 16 N 1.47582 * 86.11855 * 336.39084 * 15 14 12 17 17 C 1.36939 * 134.49014 * 204.64179 * 16 15 14 18 18 H 1.07999 * 119.99401 * 180.02562 * 17 16 15 19 19 C 1.38807 * 120.00108 * 0.02562 * 17 16 15 20 20 N 1.31618 * 120.00267 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00090 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46916 * 59.99180 * 21 19 17 23 23 H 1.48490 * 109.47571 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46956 * 300.00003 * 21 19 17 25 25 H 1.09007 * 109.47054 * 90.02602 * 1 2 3 26 26 H 1.08994 * 109.47211 * 210.02867 * 1 2 3 27 27 H 1.09000 * 109.47000 * 330.02931 * 1 2 3 28 28 H 1.07997 * 125.98942 * 179.97438 * 4 3 2 29 29 H 1.08002 * 126.58669 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47200 * 205.15089 * 7 6 2 31 31 H 1.09002 * 109.47024 * 325.14755 * 7 6 2 32 32 H 0.96999 * 119.99907 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47322 * 300.00243 * 11 10 8 34 34 H 1.09002 * 109.47266 * 60.00132 * 11 10 8 35 35 H 1.09006 * 113.73625 * 252.25033 * 14 12 11 36 36 H 1.08988 * 113.74178 * 23.44670 * 14 12 11 37 37 H 1.08998 * 113.77241 * 90.69420 * 15 14 12 38 38 H 1.09004 * 113.76552 * 222.08962 * 15 14 12 39 39 H 0.97003 * 120.00080 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6818 0.0006 5 6 3.5926 -0.6644 0.0015 6 7 2.2941 -1.0975 -0.0044 7 6 1.8425 -2.4911 -0.0113 8 6 1.5747 -2.9253 -1.4293 9 8 1.7447 -2.1473 -2.3441 10 7 1.1471 -4.1784 -1.6810 11 6 0.8873 -4.6006 -3.0596 12 6 0.4156 -6.0560 -3.0669 13 1 -0.4311 -6.2320 -2.4034 14 6 0.2296 -6.6410 -4.4787 15 6 0.8978 -7.9148 -3.9303 16 7 1.5082 -7.0362 -2.9137 17 6 2.6356 -7.1035 -2.1392 18 1 2.8656 -6.3044 -1.4500 19 6 3.4825 -8.1986 -2.2401 20 7 3.2018 -9.1725 -3.0797 21 14 5.0200 -8.2907 -1.1832 22 1 4.6368 -8.2642 0.2513 23 1 5.7482 -9.5509 -1.4774 24 1 5.8969 -7.1302 -1.4827 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5134 28 1 4.4099 1.3410 0.0003 29 1 4.4777 -1.2833 0.0018 30 1 2.6150 -3.1255 0.4232 31 1 0.9277 -2.5795 0.5747 32 1 1.0115 -4.8006 -0.9494 33 1 0.1147 -3.9664 -3.4943 34 1 1.8022 -4.5119 -3.6454 35 1 -0.8137 -6.7800 -4.7622 36 1 0.8140 -6.1319 -5.2451 37 1 0.1937 -8.6385 -3.5199 38 1 1.6190 -8.3620 -4.6145 39 1 3.7935 -9.9380 -3.1498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269342869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:53 Heat of formation + Delta-G solvation = 60.297733 kcal Electronic energy + Delta-G solvation = -21539.581873 eV Core-core repulsion = 18291.445078 eV Total energy + Delta-G solvation = -3248.136796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.09853 -40.76170 -39.55029 -35.61221 -34.99916 -34.18711 -32.63186 -30.36104 -29.79496 -28.19869 -27.46423 -25.28143 -23.86034 -22.40877 -21.98545 -21.00942 -20.56266 -18.97040 -18.23835 -18.12318 -17.13023 -16.77690 -16.45723 -16.22947 -15.76945 -15.34082 -15.26268 -14.85113 -14.67315 -14.46823 -13.94308 -13.73195 -13.53386 -13.35228 -13.17915 -13.06087 -12.90596 -12.69026 -12.59809 -12.32725 -11.86402 -11.57536 -11.49268 -11.21947 -11.00832 -10.80943 -10.46076 -10.09747 -9.28748 -8.87374 -7.85141 -5.16938 0.97554 1.44884 1.46996 1.47615 1.52968 1.68934 2.16732 2.29168 2.48844 3.32534 3.39833 3.60040 3.63835 3.75651 3.89257 4.00889 4.08090 4.13139 4.35859 4.44937 4.54845 4.62138 4.69708 4.71217 4.85273 4.87349 5.01837 5.06575 5.10460 5.30601 5.34506 5.38366 5.62031 5.75713 5.81272 5.99130 6.17799 6.49148 6.95795 7.11895 7.13742 7.67537 8.61950 9.31722 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.004569 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.915132 B = 6126.963140 C = 7236.658827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.204 3.796 3 N -0.533 5.533 4 C -0.051 4.051 5 C -0.057 4.057 6 N -0.444 5.444 7 C 0.086 3.914 8 C 0.494 3.506 9 O -0.579 6.579 10 N -0.702 5.702 11 C 0.135 3.865 12 C 0.135 3.865 13 H 0.078 0.922 14 C -0.134 4.134 15 C 0.149 3.851 16 N -0.629 5.629 17 C -0.212 4.212 18 H 0.090 0.910 19 C -0.072 4.072 20 N -0.956 5.956 21 Si 0.966 3.034 22 H -0.271 1.271 23 H -0.303 1.303 24 H -0.284 1.284 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.184 0.816 29 H 0.193 0.807 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.035 0.965 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.613 11.649 7.841 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 N -0.254 5.254 4 C -0.198 4.198 5 C -0.189 4.189 6 N -0.127 5.127 7 C -0.040 4.040 8 C 0.280 3.720 9 O -0.458 6.458 10 N -0.353 5.353 11 C 0.009 3.991 12 C 0.029 3.971 13 H 0.095 0.905 14 C -0.172 4.172 15 C 0.023 3.977 16 N -0.356 5.356 17 C -0.341 4.341 18 H 0.108 0.892 19 C -0.264 4.264 20 N -0.606 5.606 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.229 1.229 24 H -0.211 1.211 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.201 0.799 29 H 0.210 0.790 30 H 0.166 0.834 31 H 0.179 0.821 32 H 0.251 0.749 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.526 12.719 7.310 16.488 hybrid contribution 1.655 -1.719 0.429 2.424 sum -5.871 11.000 7.739 14.676 Atomic orbital electron populations 1.20319 0.82999 1.05484 1.03759 1.23880 0.96999 0.81187 1.03755 1.70187 1.03317 1.29586 1.22275 1.22616 0.94929 0.93663 1.08550 1.23101 0.87697 0.97121 1.11008 1.45006 1.06679 1.06757 1.54274 1.21951 1.06952 0.80746 0.94322 1.21204 0.76818 0.82085 0.91936 1.90756 1.53270 1.53971 1.47823 1.45823 1.66679 1.12611 1.10235 1.21522 0.99775 0.95200 0.82568 1.22672 0.90443 0.88037 0.95931 0.90497 1.23575 1.01141 0.96826 0.95690 1.22161 0.92995 0.92669 0.89837 1.46410 1.21518 1.21042 1.46608 1.19290 0.97038 1.02917 1.14843 0.89190 1.25520 1.02098 0.97209 1.01624 1.69997 1.39293 1.10399 1.40863 0.85337 0.79882 0.76185 0.79067 1.19662 1.22941 1.21075 0.90725 0.88252 0.88344 0.79873 0.78985 0.83450 0.82147 0.74936 0.90228 0.94417 0.88815 0.90754 0.95874 0.94611 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.19 71.24 0.73 -0.48 16 2 C 0.20 5.37 7.89 138.13 1.09 6.46 16 3 N -0.53 -16.44 11.25 -188.12 -2.12 -18.55 16 4 C -0.05 -1.40 11.87 83.52 0.99 -0.41 16 5 C -0.06 -1.42 11.58 83.09 0.96 -0.46 16 6 N -0.44 -10.74 2.24 -518.33 -1.16 -11.90 16 7 C 0.09 1.53 6.37 85.63 0.55 2.08 16 8 C 0.49 13.21 7.90 87.66 0.69 13.90 16 9 O -0.58 -21.34 16.42 -3.04 -0.05 -21.39 16 10 N -0.70 -18.27 5.53 -463.07 -2.56 -20.83 16 11 C 0.13 4.15 5.54 86.38 0.48 4.63 16 12 C 0.14 4.43 4.33 45.09 0.20 4.63 16 13 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 14 C -0.13 -4.32 7.86 31.25 0.25 -4.07 16 15 C 0.15 6.51 7.51 86.48 0.65 7.16 16 16 N -0.63 -28.35 3.57 -694.10 -2.48 -30.83 16 17 C -0.21 -10.61 10.51 84.03 0.88 -9.73 16 18 H 0.09 4.11 7.80 -2.91 -0.02 4.09 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 20 N -0.96 -55.79 11.38 21.65 0.25 -55.54 16 21 Si 0.97 43.50 29.55 68.60 2.03 45.53 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.10 1.13 7.17 -2.39 -0.02 1.12 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.18 4.02 8.06 -2.91 -0.02 3.99 16 29 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 30 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.16 1.54 7.21 -2.39 -0.02 1.52 16 32 H 0.41 9.19 8.47 -92.71 -0.79 8.40 16 33 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.07 2.45 8.10 -2.39 -0.02 2.44 16 37 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.04 1.82 7.15 -2.38 -0.02 1.81 16 39 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -76.81 333.79 2.10 -74.71 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.27 Total: 18.51 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 7.93 Total: 20.31 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -8.07 Total: -137.66 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.81 2.10 -74.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269342869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.005 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds