Wall clock time and date at job start Mon Mar 30 2020 23:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30501 * 125.64779 * 2 1 4 4 C 1.34134 * 109.25535 * 179.97438 * 3 2 1 5 5 C 1.34668 * 108.01972 * 0.02562 * 4 3 2 6 6 N 1.35044 * 125.65329 * 179.97438 * 2 1 3 7 7 C 1.46498 * 126.39523 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47005 * 85.02822 * 7 6 2 9 9 O 1.21279 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99694 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46725 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.96410 * 304.65980 * 12 11 10 14 14 C 1.53950 * 113.76873 * 172.98705 * 12 11 10 15 15 C 1.53937 * 86.28767 * 222.08922 * 14 12 11 16 16 N 1.47574 * 113.77175 * 76.34360 * 12 11 10 17 17 C 1.36938 * 134.49689 * 318.93280 * 16 12 11 18 18 H 1.08003 * 119.99458 * 0.02562 * 17 16 12 19 19 C 1.38805 * 120.00533 * 180.02562 * 17 16 12 20 20 N 1.31620 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47508 * 89.99654 * 21 19 17 23 23 H 1.48497 * 109.46787 * 209.99894 * 21 19 17 24 24 H 1.48505 * 109.46960 * 329.99318 * 21 19 17 25 25 H 1.09007 * 109.47095 * 90.02891 * 1 2 3 26 26 H 1.09003 * 109.47503 * 210.02462 * 1 2 3 27 27 H 1.09002 * 109.47423 * 330.02567 * 1 2 3 28 28 H 1.08001 * 125.98356 * 179.97438 * 4 3 2 29 29 H 1.08003 * 126.59021 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47154 * 205.02612 * 7 6 2 31 31 H 1.08998 * 109.47457 * 325.02563 * 7 6 2 32 32 H 0.96995 * 119.99698 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.47018 * 299.99534 * 11 10 8 34 34 H 1.08995 * 109.47664 * 60.00191 * 11 10 8 35 35 H 1.09003 * 113.73987 * 336.43738 * 14 12 11 36 36 H 1.08997 * 113.73989 * 107.74383 * 14 12 11 37 37 H 1.09008 * 113.77100 * 137.90877 * 15 14 12 38 38 H 1.09004 * 113.77235 * 269.19009 * 15 14 12 39 39 H 0.97000 * 120.00258 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6819 0.0006 5 6 3.5925 -0.6642 0.0004 6 7 2.2941 -1.0973 0.0005 7 6 1.8425 -2.4910 0.0016 8 6 1.5701 -2.9319 -1.4134 9 8 1.7362 -2.1580 -2.3323 10 7 1.1418 -4.1862 -1.6578 11 6 0.8774 -4.6149 -3.0335 12 6 0.4057 -6.0704 -3.0323 13 1 1.1040 -6.7434 -2.5347 14 6 -0.0638 -6.5717 -4.4101 15 6 -1.2224 -7.2500 -3.6571 16 7 -0.9951 -6.2414 -2.6009 17 6 -1.7711 -5.6874 -1.6179 18 1 -1.3531 -4.9448 -0.9543 19 6 -3.0947 -6.0800 -1.4744 20 7 -3.6042 -6.9846 -2.2835 21 14 -4.1533 -5.3237 -0.1340 22 1 -4.8296 -4.1117 -0.6620 23 1 -5.1742 -6.3086 0.3052 24 1 -3.2975 -4.9496 1.0206 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.4097 1.3412 0.0003 29 1 4.4777 -1.2831 0.0011 30 1 2.6165 -3.1233 0.4365 31 1 0.9297 -2.5767 0.5911 32 1 1.0085 -4.8050 -0.9228 33 1 0.1033 -3.9829 -3.4687 34 1 1.7904 -4.5290 -3.6227 35 1 -0.3835 -5.7746 -5.0814 36 1 0.6251 -7.2738 -4.8798 37 1 -2.1866 -7.1550 -4.1568 38 1 -1.0048 -8.2711 -3.3438 39 1 -4.5290 -7.2593 -2.1830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269342870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:57 Heat of formation + Delta-G solvation = 83.557213 kcal Electronic energy + Delta-G solvation = -21640.895192 eV Core-core repulsion = 18393.767003 eV Total energy + Delta-G solvation = -3247.128189 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10985 -39.50191 -37.99555 -34.28860 -33.97247 -32.28731 -31.69260 -29.11042 -28.00559 -27.07325 -26.43262 -23.46807 -22.40702 -21.39064 -20.81241 -19.73558 -19.17545 -17.62842 -17.21299 -16.59306 -15.70492 -15.49855 -15.06818 -15.02010 -14.35147 -14.07782 -13.77004 -13.73892 -13.32067 -13.13039 -12.98290 -12.62061 -12.46418 -12.28684 -11.90993 -11.52538 -11.22475 -11.10607 -10.84019 -10.64756 -10.33292 -10.04720 -9.94719 -9.85612 -9.63833 -9.31146 -8.89950 -8.79671 -8.28585 -6.99731 -5.86143 -3.19252 1.98759 2.58720 2.62062 3.20614 3.29730 3.32865 3.37731 3.40108 4.32586 4.51142 4.53554 4.64782 4.78959 4.82523 5.03547 5.28671 5.29125 5.43961 5.51644 5.57703 5.58723 5.79366 5.79755 5.91414 5.94975 6.19775 6.28903 6.30616 6.51204 6.56361 6.69586 6.78319 7.13346 7.14620 7.30647 7.48884 7.61807 7.87647 8.14620 8.26021 8.92999 9.61016 10.49359 11.30556 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.004877 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.572702 B = 5740.390334 C = 6909.458686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.223 3.777 3 N -0.496 5.496 4 C -0.029 4.029 5 C -0.054 4.054 6 N -0.440 5.440 7 C 0.082 3.918 8 C 0.492 3.508 9 O -0.531 6.531 10 N -0.707 5.707 11 C 0.125 3.875 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.156 4.156 15 C 0.159 3.841 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.907 3.093 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.282 1.282 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.807 5.024 4.164 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.039 4.039 3 N -0.215 5.215 4 C -0.176 4.176 5 C -0.186 4.186 6 N -0.122 5.122 7 C -0.045 4.045 8 C 0.275 3.725 9 O -0.407 6.407 10 N -0.358 5.358 11 C 0.000 4.000 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.195 4.195 15 C 0.034 3.966 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.738 3.262 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.208 1.208 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.108 0.892 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.291 6.278 3.677 13.432 hybrid contribution -0.270 -1.028 1.139 1.557 sum 11.021 5.251 4.815 13.123 Atomic orbital electron populations 1.20226 0.85045 1.03733 1.04049 1.23257 0.95654 0.81111 1.03874 1.70240 1.02262 1.28077 1.20966 1.22191 0.94780 0.92646 1.08021 1.22591 0.86709 0.96912 1.12410 1.44841 1.06745 1.06002 1.54657 1.21714 1.04228 0.81638 0.96910 1.20572 0.78383 0.82798 0.90697 1.90762 1.51801 1.52669 1.45478 1.45909 1.66408 1.12603 1.10916 1.21811 0.99842 0.96926 0.81407 1.22506 0.89242 0.92283 0.94183 0.93276 1.23765 0.99641 1.00369 0.95694 1.22233 0.96310 0.91177 0.86912 1.46097 1.04731 1.45056 1.37037 1.18875 0.91587 1.17086 1.07468 0.90493 1.24767 0.97010 0.99049 0.99394 1.69811 1.14111 1.33372 1.39105 0.86213 0.80504 0.78376 0.81148 1.21485 1.21613 1.20794 0.89759 0.90917 0.89211 0.81480 0.81156 0.86121 0.85967 0.76083 0.90869 0.92111 0.90482 0.92720 0.90826 0.95470 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.19 36.00 0.37 -0.53 16 2 C 0.22 3.33 7.89 -155.42 -1.23 2.11 16 3 N -0.50 -8.02 11.25 -10.82 -0.12 -8.14 16 4 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 5 C -0.05 -0.68 11.58 -16.56 -0.19 -0.87 16 6 N -0.44 -5.88 2.24 -115.19 -0.26 -6.14 16 7 C 0.08 0.90 6.37 -5.19 -0.03 0.87 16 8 C 0.49 7.29 7.90 -10.98 -0.09 7.20 16 9 O -0.53 -10.15 16.42 5.56 0.09 -10.06 16 10 N -0.71 -10.37 5.35 -60.29 -0.32 -10.69 16 11 C 0.12 2.07 5.54 -4.04 -0.02 2.05 16 12 C 0.13 2.23 4.33 -66.86 -0.29 1.94 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.16 -2.69 7.86 -25.80 -0.20 -2.89 16 15 C 0.16 3.47 7.52 -2.85 -0.02 3.45 16 16 N -0.60 -13.81 3.59 -169.74 -0.61 -14.42 16 17 C -0.22 -5.61 10.51 -15.06 -0.16 -5.76 16 18 H 0.08 1.81 7.49 -52.48 -0.39 1.42 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 20 N -0.92 -25.95 11.40 55.49 0.63 -25.31 16 21 Si 0.91 20.92 29.55 -169.99 -5.02 15.89 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 0.78 7.17 -51.93 -0.37 0.41 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 30 H 0.12 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.12 1.13 7.21 -51.93 -0.37 0.75 16 32 H 0.40 5.37 8.35 -40.82 -0.34 5.03 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.81 7.17 -51.92 -0.37 1.44 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -33.90 333.22 -8.40 -42.30 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.64 Total: 4.83 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -2.17 Total: 6.72 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: -0.68 Total: -64.70 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.90 -8.40 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269342870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.852 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds