Wall clock time and date at job start Mon Mar 30 2020 23:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30501 * 125.64779 * 2 1 4 4 C 1.34134 * 109.25535 * 179.97438 * 3 2 1 5 5 C 1.34668 * 108.01972 * 0.02562 * 4 3 2 6 6 N 1.35044 * 125.65329 * 179.97438 * 2 1 3 7 7 C 1.46498 * 126.39523 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47005 * 85.02822 * 7 6 2 9 9 O 1.21279 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99694 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46725 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.96410 * 304.65980 * 12 11 10 14 14 C 1.53950 * 113.76873 * 172.98705 * 12 11 10 15 15 C 1.53937 * 86.28767 * 222.08922 * 14 12 11 16 16 N 1.47574 * 113.77175 * 76.34360 * 12 11 10 17 17 C 1.36938 * 134.49689 * 318.93280 * 16 12 11 18 18 H 1.08003 * 119.99458 * 0.02562 * 17 16 12 19 19 C 1.38805 * 120.00533 * 180.02562 * 17 16 12 20 20 N 1.31620 * 120.00014 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47508 * 89.99654 * 21 19 17 23 23 H 1.48497 * 109.46787 * 209.99894 * 21 19 17 24 24 H 1.48505 * 109.46960 * 329.99318 * 21 19 17 25 25 H 1.09007 * 109.47095 * 90.02891 * 1 2 3 26 26 H 1.09003 * 109.47503 * 210.02462 * 1 2 3 27 27 H 1.09002 * 109.47423 * 330.02567 * 1 2 3 28 28 H 1.08001 * 125.98356 * 179.97438 * 4 3 2 29 29 H 1.08003 * 126.59021 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47154 * 205.02612 * 7 6 2 31 31 H 1.08998 * 109.47457 * 325.02563 * 7 6 2 32 32 H 0.96995 * 119.99698 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.47018 * 299.99534 * 11 10 8 34 34 H 1.08995 * 109.47664 * 60.00191 * 11 10 8 35 35 H 1.09003 * 113.73987 * 336.43738 * 14 12 11 36 36 H 1.08997 * 113.73989 * 107.74383 * 14 12 11 37 37 H 1.09008 * 113.77100 * 137.90877 * 15 14 12 38 38 H 1.09004 * 113.77235 * 269.19009 * 15 14 12 39 39 H 0.97000 * 120.00258 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6819 0.0006 5 6 3.5925 -0.6642 0.0004 6 7 2.2941 -1.0973 0.0005 7 6 1.8425 -2.4910 0.0016 8 6 1.5701 -2.9319 -1.4134 9 8 1.7362 -2.1580 -2.3323 10 7 1.1418 -4.1862 -1.6578 11 6 0.8774 -4.6149 -3.0335 12 6 0.4057 -6.0704 -3.0323 13 1 1.1040 -6.7434 -2.5347 14 6 -0.0638 -6.5717 -4.4101 15 6 -1.2224 -7.2500 -3.6571 16 7 -0.9951 -6.2414 -2.6009 17 6 -1.7711 -5.6874 -1.6179 18 1 -1.3531 -4.9448 -0.9543 19 6 -3.0947 -6.0800 -1.4744 20 7 -3.6042 -6.9846 -2.2835 21 14 -4.1533 -5.3237 -0.1340 22 1 -4.8296 -4.1117 -0.6620 23 1 -5.1742 -6.3086 0.3052 24 1 -3.2975 -4.9496 1.0206 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.4097 1.3412 0.0003 29 1 4.4777 -1.2831 0.0011 30 1 2.6165 -3.1233 0.4365 31 1 0.9297 -2.5767 0.5911 32 1 1.0085 -4.8050 -0.9228 33 1 0.1033 -3.9829 -3.4687 34 1 1.7904 -4.5290 -3.6227 35 1 -0.3835 -5.7746 -5.0814 36 1 0.6251 -7.2738 -4.8798 37 1 -2.1866 -7.1550 -4.1568 38 1 -1.0048 -8.2711 -3.3438 39 1 -4.5290 -7.2593 -2.1830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269342870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:56 Heat of formation + Delta-G solvation = 60.689714 kcal Electronic energy + Delta-G solvation = -21641.886801 eV Core-core repulsion = 18393.767003 eV Total energy + Delta-G solvation = -3248.119798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.09785 -40.75957 -39.53274 -35.59890 -34.99734 -34.17565 -32.65572 -30.35633 -29.79074 -28.20206 -27.47383 -25.27482 -23.85673 -22.38748 -21.98365 -21.00348 -20.57907 -18.97028 -18.22624 -18.11303 -17.12983 -16.74402 -16.50526 -16.19354 -15.74035 -15.35529 -15.25776 -14.91585 -14.56480 -14.48256 -13.94961 -13.73389 -13.59634 -13.34475 -13.21893 -13.08321 -12.91412 -12.68941 -12.59400 -12.26020 -11.84753 -11.56928 -11.48541 -11.20826 -10.99375 -10.81131 -10.46657 -10.08983 -9.26892 -8.86568 -7.83778 -5.15650 0.98254 1.46745 1.47269 1.49124 1.55899 1.68919 2.17861 2.29127 2.50471 3.33420 3.41330 3.57655 3.64831 3.75820 3.88403 4.00832 4.08544 4.13110 4.35605 4.43190 4.54683 4.61757 4.62854 4.71381 4.83985 4.87517 4.96947 5.06453 5.10644 5.32126 5.35104 5.38814 5.62849 5.75461 5.84943 5.99345 6.15170 6.49063 6.96535 7.12623 7.14392 7.68819 8.63142 9.33497 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.004877 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.572702 B = 5740.390334 C = 6909.458686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.199 3.801 3 N -0.533 5.533 4 C -0.055 4.055 5 C -0.047 4.047 6 N -0.443 5.443 7 C 0.086 3.914 8 C 0.494 3.506 9 O -0.578 6.578 10 N -0.702 5.702 11 C 0.135 3.865 12 C 0.135 3.865 13 H 0.076 0.924 14 C -0.134 4.134 15 C 0.149 3.851 16 N -0.629 5.629 17 C -0.210 4.210 18 H 0.093 0.907 19 C -0.073 4.073 20 N -0.957 5.957 21 Si 0.964 3.036 22 H -0.296 1.296 23 H -0.303 1.303 24 H -0.257 1.257 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.187 0.813 29 H 0.206 0.794 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.414 0.586 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.023 0.977 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.126 4.835 5.528 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 N -0.253 5.253 4 C -0.202 4.202 5 C -0.179 4.179 6 N -0.126 5.126 7 C -0.040 4.040 8 C 0.280 3.720 9 O -0.458 6.458 10 N -0.353 5.353 11 C 0.009 3.991 12 C 0.029 3.971 13 H 0.093 0.907 14 C -0.173 4.173 15 C 0.023 3.977 16 N -0.356 5.356 17 C -0.339 4.339 18 H 0.111 0.889 19 C -0.265 4.265 20 N -0.607 5.607 21 Si 0.794 3.206 22 H -0.224 1.224 23 H -0.230 1.230 24 H -0.182 1.182 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.204 0.796 29 H 0.223 0.777 30 H 0.182 0.818 31 H 0.162 0.838 32 H 0.250 0.750 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.659 6.086 5.070 15.790 hybrid contribution -0.885 -0.963 0.652 1.461 sum 12.774 5.123 5.722 14.905 Atomic orbital electron populations 1.20262 0.84138 1.05117 1.03356 1.23615 0.96520 0.81647 1.04552 1.70188 1.03663 1.29462 1.21995 1.22692 0.94667 0.94014 1.08811 1.23193 0.87426 0.96979 1.10333 1.45021 1.06894 1.06560 1.54108 1.21951 1.06822 0.80941 0.94289 1.21197 0.76964 0.81970 0.91903 1.90754 1.53797 1.53815 1.47423 1.45827 1.66108 1.13040 1.10374 1.21525 0.99474 0.95306 0.82761 1.22658 0.87117 0.93363 0.93959 0.90670 1.23572 0.97929 1.00277 0.95478 1.22190 0.96406 0.91349 0.87712 1.46445 1.07245 1.45202 1.36668 1.19352 0.91685 1.15965 1.06867 0.88886 1.25530 0.98695 1.00420 1.01885 1.70007 1.13676 1.35703 1.41289 0.85283 0.78906 0.76747 0.79709 1.22356 1.23032 1.18153 0.91362 0.89127 0.88331 0.79577 0.77683 0.81789 0.83841 0.74961 0.94213 0.90400 0.90709 0.88870 0.94622 0.95894 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.68 10.19 71.23 0.73 -0.96 16 2 C 0.20 5.70 7.89 138.12 1.09 6.79 16 3 N -0.53 -16.91 11.25 -188.13 -2.12 -19.03 16 4 C -0.06 -1.44 11.87 83.52 0.99 -0.45 16 5 C -0.05 -1.05 11.58 83.09 0.96 -0.08 16 6 N -0.44 -10.67 2.24 -518.36 -1.16 -11.83 16 7 C 0.09 1.54 6.37 85.63 0.55 2.08 16 8 C 0.49 13.25 7.90 87.66 0.69 13.94 16 9 O -0.58 -21.29 16.42 -3.03 -0.05 -21.34 16 10 N -0.70 -18.39 5.35 -463.05 -2.48 -20.87 16 11 C 0.13 4.15 5.54 86.38 0.48 4.63 16 12 C 0.14 4.43 4.33 45.10 0.20 4.62 16 13 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 14 C -0.13 -4.33 7.86 31.25 0.25 -4.08 16 15 C 0.15 6.50 7.52 86.43 0.65 7.15 16 16 N -0.63 -28.16 3.59 -690.92 -2.48 -30.63 16 17 C -0.21 -10.37 10.51 84.03 0.88 -9.49 16 18 H 0.09 4.16 7.49 -2.91 -0.02 4.13 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 20 N -0.96 -55.70 11.40 21.65 0.25 -55.45 16 21 Si 0.96 43.03 29.55 68.60 2.03 45.06 16 22 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.09 1.76 7.17 -2.39 -0.02 1.74 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.19 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 30 H 0.16 1.54 8.13 -2.39 -0.02 1.52 16 31 H 0.14 2.02 7.21 -2.39 -0.02 2.00 16 32 H 0.41 9.36 8.35 -92.71 -0.77 8.59 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.04 1.81 7.17 -2.38 -0.02 1.80 16 38 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -76.17 333.22 2.20 -73.97 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.28 Total: 19.41 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 7.93 Total: 20.72 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -7.99 Total: -137.82 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -76.17 2.20 -73.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269342870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.664 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds