Wall clock time and date at job start Tue Mar 31 2020 00:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46444 * 2 1 4 4 N 1.30452 * 125.98530 * 269.99481 * 3 2 1 5 5 N 1.39936 * 108.89493 * 180.02562 * 4 3 2 6 6 H 0.96995 * 125.75245 * 180.02562 * 5 4 3 7 7 C 1.34266 * 108.49066 * 359.75302 * 5 4 3 8 8 C 1.38040 * 107.41584 * 0.39247 * 7 5 4 9 9 C 1.47433 * 126.41204 * 179.87260 * 8 7 5 10 10 O 1.21605 * 119.99729 * 184.82247 * 9 8 7 11 11 N 1.34775 * 119.99978 * 4.81796 * 9 8 7 12 12 C 1.46497 * 119.99911 * 184.89200 * 11 9 8 13 13 C 1.53001 * 109.47042 * 184.87739 * 12 11 9 14 14 N 1.46501 * 115.54745 * 85.45758 * 13 12 11 15 15 C 1.36937 * 120.00044 * 65.28043 * 14 13 12 16 16 H 1.08001 * 119.99821 * 355.58320 * 15 14 13 17 17 C 1.38805 * 119.99945 * 175.59004 * 15 14 13 18 18 N 1.31620 * 120.00211 * 5.05433 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 185.05848 * 17 15 14 20 20 H 1.48506 * 109.47204 * 84.99307 * 19 17 15 21 21 H 1.48498 * 109.47091 * 204.99473 * 19 17 15 22 22 H 1.48506 * 109.46834 * 324.99547 * 19 17 15 23 23 C 1.53007 * 117.49690 * 231.12659 * 13 12 11 24 24 C 1.53001 * 117.49774 * 299.78317 * 13 12 11 25 25 H 1.09003 * 109.46238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47536 * 299.99804 * 1 2 3 27 27 H 1.08999 * 109.47424 * 60.00545 * 1 2 3 28 28 H 1.08997 * 109.47536 * 240.00195 * 2 1 3 29 29 H 1.08999 * 109.47424 * 119.99455 * 2 1 3 30 30 H 1.07996 * 126.29025 * 180.24548 * 7 5 4 31 31 H 0.97001 * 119.99777 * 4.89977 * 11 9 8 32 32 H 1.09007 * 109.46956 * 64.87928 * 12 11 9 33 33 H 1.08999 * 109.47223 * 304.88142 * 12 11 9 34 34 H 0.96999 * 119.99503 * 245.54649 * 14 13 12 35 35 H 0.97002 * 119.99834 * 180.02562 * 18 17 15 36 36 H 1.08994 * 117.49550 * 215.00505 * 23 13 12 37 37 H 1.09001 * 117.49697 * 0.02562 * 23 13 12 38 38 H 1.08997 * 117.50069 * 359.97438 * 24 13 12 39 39 H 1.09001 * 117.49350 * 144.97844 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2877 2.1436 -1.0556 5 7 2.7340 3.4045 -0.6443 6 1 2.9914 4.1335 -1.2302 7 6 2.7400 3.4372 0.6979 8 6 2.3094 2.2036 1.1432 9 6 2.1606 1.7835 2.5485 10 8 1.8542 0.6363 2.8110 11 7 2.3641 2.6709 3.5423 12 6 2.3218 2.2294 4.9385 13 6 2.4614 3.4419 5.8612 14 7 1.2161 4.1512 6.1651 15 6 0.2301 3.5273 6.8819 16 1 0.3401 2.4900 7.1618 17 6 -0.9106 4.2280 7.2486 18 7 -1.0908 5.4606 6.8239 19 14 -2.1900 3.4215 8.3451 20 1 -1.8005 3.5916 9.7681 21 1 -3.5117 4.0579 8.1142 22 1 -2.2748 1.9739 8.0247 23 6 3.5224 3.3739 6.9615 24 6 3.7389 4.2757 5.7437 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.0307 4.2740 1.3156 31 1 2.5385 3.6019 3.3330 32 1 3.1410 1.5348 5.1249 33 1 1.3719 1.7318 5.1336 34 1 1.0885 5.0615 5.8553 35 1 -1.8878 5.9504 7.0805 36 1 3.2939 3.8570 7.9115 37 1 4.1213 2.4656 7.0277 38 1 4.4800 3.9603 5.0094 39 1 3.6526 5.3521 5.8922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269442604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:56 Heat of formation + Delta-G solvation = 65.349972 kcal Electronic energy + Delta-G solvation = -21426.222591 eV Core-core repulsion = 18178.304877 eV Total energy + Delta-G solvation = -3247.917714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45794 -38.94983 -37.38078 -34.38909 -33.55313 -32.98437 -30.49832 -30.33520 -29.69818 -26.42943 -24.02032 -23.89766 -22.93330 -21.86501 -20.14889 -19.63733 -19.15441 -18.20760 -17.09350 -16.33512 -15.57545 -15.29974 -15.02795 -14.63037 -14.26337 -14.18786 -14.01724 -13.66648 -13.31571 -13.08347 -12.89479 -12.30034 -12.10136 -11.87371 -11.46347 -11.18864 -10.99287 -10.96169 -10.90401 -10.76598 -10.27499 -10.24958 -9.70767 -9.66312 -9.59005 -9.27697 -8.92411 -8.85273 -8.49053 -7.06770 -5.83624 -3.13224 1.46865 2.16845 2.59220 3.42853 3.48508 3.49914 3.55877 3.71816 4.39503 4.45353 4.56874 4.61794 5.04495 5.21244 5.26057 5.30605 5.38856 5.46601 5.48634 5.57259 5.63491 5.67191 5.81279 6.00405 6.04877 6.19058 6.26785 6.32674 6.41506 6.47363 6.56094 6.70868 6.77167 6.90159 6.98682 7.44998 7.70653 7.96092 8.34735 8.64990 9.46322 9.99512 10.34464 11.38504 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.004564 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.763314 B = 6133.448056 C = 6778.568683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C 0.138 3.862 4 N -0.303 5.303 5 N -0.465 5.465 6 H 0.442 0.558 7 C 0.103 3.897 8 C -0.279 4.279 9 C 0.588 3.412 10 O -0.545 6.545 11 N -0.712 5.712 12 C 0.148 3.852 13 C 0.129 3.871 14 N -0.689 5.689 15 C -0.238 4.238 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.186 4.186 24 C -0.189 4.189 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.186 0.814 31 H 0.395 0.605 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.456 -3.119 -13.013 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.031 4.031 4 N -0.125 5.125 5 N -0.169 5.169 6 H 0.287 0.713 7 C -0.050 4.050 8 C -0.294 4.294 9 C 0.375 3.625 10 O -0.424 6.424 11 N -0.361 5.361 12 C 0.022 3.978 13 C 0.035 3.965 14 N -0.328 5.328 15 C -0.368 4.368 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.227 4.227 24 C -0.226 4.226 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.203 0.797 31 H 0.228 0.772 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.102 -4.006 -13.966 17.695 hybrid contribution -0.526 1.137 1.075 1.651 sum 9.575 -2.869 -12.890 16.312 Atomic orbital electron populations 1.21629 0.93961 1.02071 1.02138 1.20144 0.96556 0.88064 1.04098 1.22485 0.94870 0.96985 0.88713 1.77129 1.22128 0.90751 1.22526 1.46067 1.52042 1.13330 1.05451 0.71342 1.23182 0.97440 0.98757 0.85600 1.20413 1.18727 0.95261 0.94971 1.17210 0.76708 0.85230 0.83361 1.90719 1.48380 1.19147 1.84168 1.45759 1.72471 1.11553 1.06342 1.21273 1.02280 0.95610 0.78593 1.20181 0.84206 0.94420 0.97681 1.41778 1.12020 1.14836 1.64171 1.19164 0.96367 0.95273 1.26030 0.90879 1.24742 0.98530 0.96259 1.00981 1.69662 1.28857 1.10728 1.48745 0.86208 0.80833 0.78556 0.80650 1.21573 1.21812 1.20589 1.23373 1.03965 1.00728 0.94658 1.23080 0.99752 0.98150 1.01658 0.91913 0.91945 0.93074 0.90831 0.87820 0.79717 0.77168 0.92503 0.90009 0.77809 0.93437 0.88629 0.89891 0.89486 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.05 -0.64 6.03 -27.88 -0.17 -0.80 16 3 C 0.14 1.92 6.52 -82.02 -0.53 1.39 16 4 N -0.30 -3.94 12.63 33.90 0.43 -3.51 16 5 N -0.46 -4.44 7.29 30.85 0.22 -4.22 16 6 H 0.44 2.51 8.96 -182.73 -1.64 0.87 16 7 C 0.10 1.04 11.51 -16.56 -0.19 0.84 16 8 C -0.28 -3.88 6.12 -105.07 -0.64 -4.52 16 9 C 0.59 9.73 7.81 -12.52 -0.10 9.63 16 10 O -0.55 -10.64 14.88 5.27 0.08 -10.57 16 11 N -0.71 -11.06 5.46 -61.38 -0.33 -11.40 16 12 C 0.15 2.64 5.80 -4.04 -0.02 2.62 16 13 C 0.13 2.39 2.23 -131.81 -0.29 2.10 16 14 N -0.69 -16.24 5.50 -47.23 -0.26 -16.50 16 15 C -0.24 -6.37 9.52 -15.06 -0.14 -6.52 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.35 13.07 55.49 0.73 -26.62 16 19 Si 0.91 22.23 29.56 -169.99 -5.02 17.21 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.19 -3.11 10.11 -26.69 -0.27 -3.38 16 24 C -0.19 -2.81 9.82 -26.69 -0.26 -3.07 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.47 6.46 -51.93 -0.34 1.13 16 30 H 0.19 1.17 7.51 -52.49 -0.39 0.77 16 31 H 0.39 5.22 7.22 -40.82 -0.29 4.92 16 32 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 33 H 0.08 1.75 7.69 -51.93 -0.40 1.35 16 34 H 0.39 9.69 8.04 -40.82 -0.33 9.36 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -33.13 335.52 -8.18 -41.31 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.72 Total: 12.68 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.35 Total: -3.44 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.78 Total: -62.25 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.13 -8.18 -41.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269442604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.660 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds