Wall clock time and date at job start Tue Mar 31 2020 00:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46444 * 2 1 4 4 N 1.30452 * 125.98530 * 269.99481 * 3 2 1 5 5 N 1.39936 * 108.89493 * 180.02562 * 4 3 2 6 6 H 0.96995 * 125.75245 * 180.02562 * 5 4 3 7 7 C 1.34266 * 108.49066 * 359.75302 * 5 4 3 8 8 C 1.38040 * 107.41584 * 0.39247 * 7 5 4 9 9 C 1.47433 * 126.41204 * 179.87260 * 8 7 5 10 10 O 1.21605 * 119.99729 * 184.82247 * 9 8 7 11 11 N 1.34775 * 119.99978 * 4.81796 * 9 8 7 12 12 C 1.46497 * 119.99911 * 184.89200 * 11 9 8 13 13 C 1.53001 * 109.47042 * 184.87739 * 12 11 9 14 14 N 1.46501 * 115.54745 * 85.45758 * 13 12 11 15 15 C 1.36937 * 120.00044 * 65.28043 * 14 13 12 16 16 H 1.08001 * 119.99821 * 355.58320 * 15 14 13 17 17 C 1.38805 * 119.99945 * 175.59004 * 15 14 13 18 18 N 1.31620 * 120.00211 * 5.05433 * 17 15 14 19 19 Si 1.86805 * 120.00110 * 185.05848 * 17 15 14 20 20 H 1.48506 * 109.47204 * 84.99307 * 19 17 15 21 21 H 1.48498 * 109.47091 * 204.99473 * 19 17 15 22 22 H 1.48506 * 109.46834 * 324.99547 * 19 17 15 23 23 C 1.53007 * 117.49690 * 231.12659 * 13 12 11 24 24 C 1.53001 * 117.49774 * 299.78317 * 13 12 11 25 25 H 1.09003 * 109.46238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47536 * 299.99804 * 1 2 3 27 27 H 1.08999 * 109.47424 * 60.00545 * 1 2 3 28 28 H 1.08997 * 109.47536 * 240.00195 * 2 1 3 29 29 H 1.08999 * 109.47424 * 119.99455 * 2 1 3 30 30 H 1.07996 * 126.29025 * 180.24548 * 7 5 4 31 31 H 0.97001 * 119.99777 * 4.89977 * 11 9 8 32 32 H 1.09007 * 109.46956 * 64.87928 * 12 11 9 33 33 H 1.08999 * 109.47223 * 304.88142 * 12 11 9 34 34 H 0.96999 * 119.99503 * 245.54649 * 14 13 12 35 35 H 0.97002 * 119.99834 * 180.02562 * 18 17 15 36 36 H 1.08994 * 117.49550 * 215.00505 * 23 13 12 37 37 H 1.09001 * 117.49697 * 0.02562 * 23 13 12 38 38 H 1.08997 * 117.50069 * 359.97438 * 24 13 12 39 39 H 1.09001 * 117.49350 * 144.97844 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2877 2.1436 -1.0556 5 7 2.7340 3.4045 -0.6443 6 1 2.9914 4.1335 -1.2302 7 6 2.7400 3.4372 0.6979 8 6 2.3094 2.2036 1.1432 9 6 2.1606 1.7835 2.5485 10 8 1.8542 0.6363 2.8110 11 7 2.3641 2.6709 3.5423 12 6 2.3218 2.2294 4.9385 13 6 2.4614 3.4419 5.8612 14 7 1.2161 4.1512 6.1651 15 6 0.2301 3.5273 6.8819 16 1 0.3401 2.4900 7.1618 17 6 -0.9106 4.2280 7.2486 18 7 -1.0908 5.4606 6.8239 19 14 -2.1900 3.4215 8.3451 20 1 -1.8005 3.5916 9.7681 21 1 -3.5117 4.0579 8.1142 22 1 -2.2748 1.9739 8.0247 23 6 3.5224 3.3739 6.9615 24 6 3.7389 4.2757 5.7437 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.0307 4.2740 1.3156 31 1 2.5385 3.6019 3.3330 32 1 3.1410 1.5348 5.1249 33 1 1.3719 1.7318 5.1336 34 1 1.0885 5.0615 5.8553 35 1 -1.8878 5.9504 7.0805 36 1 3.2939 3.8570 7.9115 37 1 4.1213 2.4656 7.0277 38 1 4.4800 3.9603 5.0094 39 1 3.6526 5.3521 5.8922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269442604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:54 Heat of formation + Delta-G solvation = 40.702901 kcal Electronic energy + Delta-G solvation = -21427.291368 eV Core-core repulsion = 18178.304877 eV Total energy + Delta-G solvation = -3248.986491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.40473 -40.25937 -38.80960 -35.50588 -35.05961 -34.61511 -31.64291 -31.49938 -31.28464 -27.76476 -25.91753 -25.00320 -24.01924 -23.13058 -21.23649 -20.93065 -20.33058 -19.34963 -19.03843 -17.53360 -17.02644 -16.47477 -16.31938 -15.94438 -15.62355 -15.45799 -15.24937 -15.03216 -14.85572 -14.53809 -13.91574 -13.68148 -13.39411 -13.27536 -12.88479 -12.86024 -12.44977 -12.25709 -12.19845 -12.15513 -11.94242 -11.80086 -11.56117 -10.97835 -10.90560 -10.54705 -10.50117 -10.07157 -9.67667 -8.99842 -7.95453 -5.22385 0.57370 1.10585 1.47273 1.47656 1.55368 1.81853 2.32293 2.52765 2.54569 3.14755 3.39052 3.48041 3.71363 3.77486 3.90867 4.17624 4.22526 4.27190 4.35894 4.43761 4.47020 4.55636 4.69779 4.86475 4.90579 4.99352 5.03198 5.10704 5.17631 5.26680 5.28390 5.43650 5.46067 5.57347 5.61356 6.28400 6.28591 6.51254 6.78222 7.34883 7.42030 8.09590 8.32179 9.27177 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.004564 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.763314 B = 6133.448056 C = 6778.568683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 C 0.123 3.877 4 N -0.321 5.321 5 N -0.446 5.446 6 H 0.461 0.539 7 C 0.135 3.865 8 C -0.317 4.317 9 C 0.586 3.414 10 O -0.586 6.586 11 N -0.703 5.703 12 C 0.161 3.839 13 C 0.098 3.902 14 N -0.699 5.699 15 C -0.229 4.229 16 H 0.069 0.931 17 C -0.068 4.068 18 N -0.965 5.965 19 Si 0.961 3.039 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.277 1.277 23 C -0.186 4.186 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.229 0.771 31 H 0.408 0.592 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.377 0.623 35 H 0.250 0.750 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -2.439 -14.073 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.089 4.089 3 C -0.045 4.045 4 N -0.144 5.144 5 N -0.152 5.152 6 H 0.310 0.690 7 C -0.019 4.019 8 C -0.332 4.332 9 C 0.374 3.626 10 O -0.467 6.467 11 N -0.353 5.353 12 C 0.035 3.965 13 C 0.006 3.994 14 N -0.337 5.337 15 C -0.360 4.360 16 H 0.087 0.913 17 C -0.261 4.261 18 N -0.615 5.615 19 Si 0.791 3.209 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.202 1.202 23 C -0.227 4.227 24 C -0.187 4.187 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.245 0.755 31 H 0.244 0.756 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.211 0.789 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.077 -3.321 -15.062 19.589 hybrid contribution -1.017 0.930 1.338 1.920 sum 11.060 -2.391 -13.724 17.787 Atomic orbital electron populations 1.21569 0.93926 1.02749 1.00910 1.20110 0.96563 0.88211 1.03979 1.22627 0.95258 0.97465 0.89140 1.77075 1.22823 0.92021 1.22442 1.46110 1.50384 1.12864 1.05805 0.69009 1.23701 0.94215 0.98200 0.85821 1.20304 1.22149 0.97352 0.93434 1.17610 0.75746 0.84713 0.84490 1.90694 1.50233 1.20889 1.84913 1.45617 1.72275 1.12166 1.05272 1.20952 1.00446 0.95287 0.79784 1.20368 0.83551 0.95864 0.99625 1.41818 1.13380 1.14557 1.63952 1.19407 0.96903 0.95013 1.24722 0.91345 1.25391 1.00641 0.97014 1.03030 1.69781 1.29276 1.11920 1.50560 0.85332 0.78548 0.77735 0.79259 1.21143 1.22333 1.20239 1.23382 1.02948 1.02274 0.94049 1.23183 0.97088 0.97780 1.00677 0.90366 0.94803 0.92418 0.89081 0.89665 0.75461 0.75601 0.90992 0.94505 0.78939 0.94094 0.90544 0.87505 0.85769 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.89 71.98 0.71 -2.65 16 2 C -0.05 -1.28 6.03 29.85 0.18 -1.10 16 3 C 0.12 3.34 6.52 43.52 0.28 3.62 16 4 N -0.32 -7.74 12.63 -46.67 -0.59 -8.33 16 5 N -0.45 -7.08 7.29 -56.32 -0.41 -7.49 16 6 H 0.46 3.46 8.96 -213.43 -1.91 1.55 16 7 C 0.14 2.26 11.51 84.27 0.97 3.23 16 8 C -0.32 -8.41 6.12 -20.15 -0.12 -8.53 16 9 C 0.59 19.18 7.81 86.67 0.68 19.85 16 10 O -0.59 -23.53 14.88 -4.05 -0.06 -23.60 16 11 N -0.70 -20.90 5.46 -466.36 -2.55 -23.45 16 12 C 0.16 5.66 5.80 86.38 0.50 6.16 16 13 C 0.10 3.50 2.23 3.61 0.01 3.50 16 14 N -0.70 -32.95 5.50 -303.33 -1.67 -34.62 16 15 C -0.23 -12.41 9.52 84.03 0.80 -11.62 16 16 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.96 -57.54 13.07 21.65 0.28 -57.25 16 19 Si 0.96 46.43 29.56 68.60 2.03 48.46 16 20 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 C -0.19 -5.80 10.11 30.62 0.31 -5.49 16 24 C -0.15 -3.93 9.82 30.62 0.30 -3.63 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.08 2.52 6.46 -2.39 -0.02 2.50 16 30 H 0.23 1.67 7.51 -2.91 -0.02 1.65 16 31 H 0.41 9.67 7.22 -92.71 -0.67 9.00 16 32 H 0.07 2.30 7.90 -2.38 -0.02 2.28 16 33 H 0.04 1.62 7.69 -2.39 -0.02 1.60 16 34 H 0.38 18.94 8.04 -92.71 -0.75 18.20 16 35 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.11 2.81 8.05 -2.39 -0.02 2.79 16 38 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -74.44 335.52 -0.11 -74.54 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -2.23 Total: 31.77 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 5.08 Total: -0.05 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -4.93 Total: -131.13 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.44 -0.11 -74.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269442604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.247 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds