Wall clock time and date at job start Tue Mar 31 2020 01:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47494 * 2 1 4 4 N 1.46506 * 109.47264 * 300.00208 * 3 2 1 5 5 C 1.36928 * 120.00158 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00238 * 359.97438 * 5 4 3 7 7 C 1.38814 * 120.00150 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00191 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47107 * 119.99942 * 9 7 5 12 12 H 1.48500 * 109.47155 * 239.99859 * 9 7 5 13 13 N 1.46505 * 109.46824 * 239.99755 * 2 1 3 14 14 C 1.34772 * 119.99426 * 175.39344 * 13 2 1 15 15 O 1.21602 * 120.00335 * 355.82575 * 14 13 2 16 16 C 1.47437 * 119.99569 * 175.83111 * 14 13 2 17 17 C 1.41284 * 126.41512 * 0.03887 * 16 14 13 18 18 N 1.30446 * 108.02299 * 179.70668 * 17 16 14 19 19 N 1.39932 * 108.89712 * 0.40880 * 18 17 16 20 20 H 0.97000 * 125.75641 * 179.85059 * 19 18 17 21 21 C 1.34264 * 108.48958 * 359.58064 * 19 18 17 22 22 C 1.53003 * 109.47067 * 120.00155 * 2 1 3 23 23 C 1.53002 * 117.50054 * 121.75615 * 22 2 1 24 24 C 1.53002 * 60.00032 * 252.51124 * 23 22 2 25 25 H 1.08994 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46681 * 300.00091 * 1 2 3 27 27 H 1.08998 * 109.47224 * 59.99738 * 1 2 3 28 28 H 1.09005 * 109.46946 * 59.99665 * 3 2 1 29 29 H 1.08997 * 109.47374 * 180.02562 * 3 2 1 30 30 H 0.96997 * 119.99363 * 359.97438 * 4 3 2 31 31 H 0.96991 * 119.99875 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99744 * 355.38996 * 13 2 1 33 33 H 1.08007 * 125.98791 * 359.92763 * 17 16 14 34 34 H 1.07997 * 126.28581 * 180.26194 * 21 19 18 35 35 H 1.08999 * 115.55224 * 267.46992 * 22 2 1 36 36 H 1.08999 * 117.49499 * 0.02562 * 23 22 2 37 37 H 1.09004 * 117.49459 * 145.02019 * 23 22 2 38 38 H 1.08999 * 117.49573 * 252.51064 * 24 23 22 39 39 H 1.08999 * 117.49585 * 107.49337 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1331 -1.1962 5 6 1.8822 3.4442 -1.4126 6 1 2.5025 3.9693 -0.7013 7 6 1.4200 4.0985 -2.5462 8 7 0.6644 3.4584 -3.4134 9 14 1.8701 5.8872 -2.8411 10 1 2.7231 6.3732 -1.7270 11 1 2.6137 6.0060 -4.1212 12 1 0.6321 6.7043 -2.9101 13 7 2.0183 -0.6907 -1.1962 14 6 3.3398 -0.7333 -1.4574 15 8 4.1205 -0.1347 -0.7425 16 6 3.8389 -1.5054 -2.6100 17 6 3.0576 -2.2464 -3.5247 18 7 3.8616 -2.7803 -4.4023 19 7 5.1771 -2.4197 -4.0901 20 1 5.9697 -2.6853 -4.5823 21 6 5.1569 -1.6392 -2.9978 22 6 2.0401 -0.7213 1.2493 23 6 2.9490 -1.9347 1.0429 24 6 1.5079 -2.1304 1.5182 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 0.9944 1.6616 -1.8348 31 1 0.3411 3.9157 -4.2053 32 1 1.3905 -1.1174 -1.8001 33 1 1.9827 -2.3494 -3.5034 34 1 6.0142 -1.1971 -2.5122 35 1 2.2377 -0.0849 2.1118 36 1 3.1839 -2.2188 0.0172 37 1 3.7450 -2.0965 1.7697 38 1 1.3559 -2.4210 2.5577 39 1 0.7945 -2.5436 0.8051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269600659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:57 Heat of formation + Delta-G solvation = 88.965452 kcal Electronic energy + Delta-G solvation = -22418.526432 eV Core-core repulsion = 19171.632762 eV Total energy + Delta-G solvation = -3246.893670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29352 -39.86516 -36.87068 -34.85499 -33.27915 -31.99757 -31.13241 -30.04325 -29.23460 -25.93672 -23.79361 -23.04995 -22.04267 -21.88041 -21.23709 -19.92757 -18.92600 -18.41086 -17.18859 -15.99211 -15.76879 -15.29072 -14.82714 -14.56511 -14.30005 -14.07670 -13.53950 -13.43318 -13.21009 -12.82215 -12.73751 -12.05607 -11.96780 -11.78700 -11.23258 -11.09725 -10.99238 -10.80361 -10.71718 -10.66551 -10.13051 -9.95315 -9.84347 -9.74566 -9.57910 -9.19418 -8.76727 -8.62062 -8.40514 -6.71942 -5.65319 -2.90123 1.65419 2.28903 2.70316 3.49836 3.55854 3.58043 3.65534 3.89928 4.11534 4.68598 4.69899 4.88289 4.94477 5.18406 5.22907 5.30232 5.39347 5.52588 5.63200 5.71981 5.77899 5.82988 5.84827 6.07684 6.13436 6.24905 6.35588 6.38748 6.40882 6.47416 6.71747 6.74122 7.05791 7.07468 7.32614 7.47641 7.83213 8.09175 8.54823 8.84982 9.65964 10.26078 10.61554 11.58221 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.006661 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.773708 B = 4202.856118 C = 5533.876781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.202 3.798 3 C 0.138 3.862 4 N -0.725 5.725 5 C -0.224 4.224 6 H 0.068 0.932 7 C -0.019 4.019 8 N -0.937 5.937 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.293 1.293 13 N -0.712 5.712 14 C 0.602 3.398 15 O -0.533 6.533 16 C -0.283 4.283 17 C 0.085 3.915 18 N -0.301 5.301 19 N -0.468 5.468 20 H 0.442 0.558 21 C 0.127 3.873 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.184 4.184 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.381 0.619 31 H 0.251 0.749 32 H 0.393 0.607 33 H 0.188 0.812 34 H 0.190 0.810 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -15.740 4.229 16.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.116 3.884 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.355 4.355 6 H 0.086 0.914 7 C -0.214 4.214 8 N -0.587 5.587 9 Si 0.735 3.265 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.221 1.221 13 N -0.362 5.362 14 C 0.390 3.610 15 O -0.410 6.410 16 C -0.297 4.297 17 C -0.103 4.103 18 N -0.122 5.122 19 N -0.174 5.174 20 H 0.286 0.714 21 C -0.025 4.025 22 C -0.162 4.162 23 C -0.200 4.200 24 C -0.221 4.221 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.215 0.785 31 H 0.061 0.939 32 H 0.227 0.773 33 H 0.205 0.795 34 H 0.206 0.794 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.217 -15.869 3.759 17.122 hybrid contribution 0.085 1.155 -0.353 1.211 sum 5.301 -14.714 3.406 16.006 Atomic orbital electron populations 1.21988 0.93281 1.01266 1.04018 1.20026 0.93545 0.92622 0.82174 1.21190 0.99364 0.87698 0.90696 1.42238 1.61153 1.10363 1.23154 1.19281 1.24559 0.87626 1.04058 0.91379 1.24662 1.01079 0.98064 0.97584 1.69657 1.40103 1.35792 1.13136 0.86151 0.77411 0.85424 0.77499 1.20675 1.22159 1.22079 1.45735 1.06820 1.57263 1.26424 1.16896 0.82343 0.79201 0.82588 1.90730 1.56046 1.44293 1.49979 1.20498 0.92988 1.12063 1.04196 1.24079 1.00141 0.94528 0.91553 1.77104 0.87165 1.24429 1.23499 1.46175 1.08364 1.39742 1.23083 0.71412 1.23019 0.99236 0.91994 0.88254 1.22565 1.03988 0.90147 0.99532 1.22926 0.92685 1.02222 1.02171 1.22956 0.97592 1.00186 1.01397 0.92925 0.91106 0.90739 0.96389 0.92412 0.78478 0.93890 0.77336 0.79471 0.79355 0.87477 0.88748 0.89698 0.89486 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.18 37.16 0.30 -1.89 16 2 C 0.20 3.32 0.55 -131.82 -0.07 3.25 16 3 C 0.14 2.98 4.83 -4.04 -0.02 2.96 16 4 N -0.72 -18.57 5.17 -59.91 -0.31 -18.88 16 5 C -0.22 -6.47 9.99 -15.06 -0.15 -6.62 16 6 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 7 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 8 N -0.94 -28.62 13.06 55.49 0.72 -27.90 16 9 Si 0.90 23.19 29.55 -169.99 -5.02 18.17 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 13 N -0.71 -11.07 4.19 -48.66 -0.20 -11.27 16 14 C 0.60 10.27 4.82 -12.52 -0.06 10.20 16 15 O -0.53 -10.71 13.17 5.28 0.07 -10.64 16 16 C -0.28 -4.11 6.13 -105.07 -0.64 -4.76 16 17 C 0.09 1.11 11.50 -16.98 -0.20 0.92 16 18 N -0.30 -3.96 12.63 30.86 0.39 -3.57 16 19 N -0.47 -4.98 7.29 30.85 0.22 -4.75 16 20 H 0.44 3.00 8.96 -182.72 -1.64 1.36 16 21 C 0.13 1.55 11.82 -16.56 -0.20 1.35 16 22 C -0.14 -2.07 4.86 -90.62 -0.44 -2.51 16 23 C -0.16 -2.22 8.53 -26.73 -0.23 -2.45 16 24 C -0.18 -2.18 9.68 -26.73 -0.26 -2.44 16 25 H 0.05 0.63 6.89 -51.93 -0.36 0.27 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 1.39 5.71 -51.93 -0.30 1.09 16 30 H 0.38 10.02 6.35 -40.82 -0.26 9.76 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.39 5.23 7.44 -40.82 -0.30 4.93 16 33 H 0.19 1.91 7.51 -52.48 -0.39 1.52 16 34 H 0.19 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.11 1.57 8.06 -51.93 -0.42 1.15 16 36 H 0.09 1.37 5.17 -51.93 -0.27 1.10 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.01 7.17 -51.93 -0.37 0.63 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -35.34 319.69 -7.69 -43.03 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -6.32 Total: 13.65 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.06 Total: -2.65 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.83 Total: -66.38 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.34 -7.69 -43.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269600659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.995 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds