Wall clock time and date at job start Tue Mar 31 2020 01:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47494 * 2 1 4 4 N 1.46506 * 109.47264 * 300.00208 * 3 2 1 5 5 C 1.36928 * 120.00158 * 179.97438 * 4 3 2 6 6 H 1.08002 * 120.00238 * 359.97438 * 5 4 3 7 7 C 1.38814 * 120.00150 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00191 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47107 * 119.99942 * 9 7 5 12 12 H 1.48500 * 109.47155 * 239.99859 * 9 7 5 13 13 N 1.46505 * 109.46824 * 239.99755 * 2 1 3 14 14 C 1.34772 * 119.99426 * 175.39344 * 13 2 1 15 15 O 1.21602 * 120.00335 * 355.82575 * 14 13 2 16 16 C 1.47437 * 119.99569 * 175.83111 * 14 13 2 17 17 C 1.41284 * 126.41512 * 0.03887 * 16 14 13 18 18 N 1.30446 * 108.02299 * 179.70668 * 17 16 14 19 19 N 1.39932 * 108.89712 * 0.40880 * 18 17 16 20 20 H 0.97000 * 125.75641 * 179.85059 * 19 18 17 21 21 C 1.34264 * 108.48958 * 359.58064 * 19 18 17 22 22 C 1.53003 * 109.47067 * 120.00155 * 2 1 3 23 23 C 1.53002 * 117.50054 * 121.75615 * 22 2 1 24 24 C 1.53002 * 60.00032 * 252.51124 * 23 22 2 25 25 H 1.08994 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46681 * 300.00091 * 1 2 3 27 27 H 1.08998 * 109.47224 * 59.99738 * 1 2 3 28 28 H 1.09005 * 109.46946 * 59.99665 * 3 2 1 29 29 H 1.08997 * 109.47374 * 180.02562 * 3 2 1 30 30 H 0.96997 * 119.99363 * 359.97438 * 4 3 2 31 31 H 0.96991 * 119.99875 * 179.97438 * 8 7 5 32 32 H 0.97002 * 119.99744 * 355.38996 * 13 2 1 33 33 H 1.08007 * 125.98791 * 359.92763 * 17 16 14 34 34 H 1.07997 * 126.28581 * 180.26194 * 21 19 18 35 35 H 1.08999 * 115.55224 * 267.46992 * 22 2 1 36 36 H 1.08999 * 117.49499 * 0.02562 * 23 22 2 37 37 H 1.09004 * 117.49459 * 145.02019 * 23 22 2 38 38 H 1.08999 * 117.49573 * 252.51064 * 24 23 22 39 39 H 1.08999 * 117.49585 * 107.49337 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.5518 2.1331 -1.1962 5 6 1.8822 3.4442 -1.4126 6 1 2.5025 3.9693 -0.7013 7 6 1.4200 4.0985 -2.5462 8 7 0.6644 3.4584 -3.4134 9 14 1.8701 5.8872 -2.8411 10 1 2.7231 6.3732 -1.7270 11 1 2.6137 6.0060 -4.1212 12 1 0.6321 6.7043 -2.9101 13 7 2.0183 -0.6907 -1.1962 14 6 3.3398 -0.7333 -1.4574 15 8 4.1205 -0.1347 -0.7425 16 6 3.8389 -1.5054 -2.6100 17 6 3.0576 -2.2464 -3.5247 18 7 3.8616 -2.7803 -4.4023 19 7 5.1771 -2.4197 -4.0901 20 1 5.9697 -2.6853 -4.5823 21 6 5.1569 -1.6392 -2.9978 22 6 2.0401 -0.7213 1.2493 23 6 2.9490 -1.9347 1.0429 24 6 1.5079 -2.1304 1.5182 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4424 -0.0005 30 1 0.9944 1.6616 -1.8348 31 1 0.3411 3.9157 -4.2053 32 1 1.3905 -1.1174 -1.8001 33 1 1.9827 -2.3494 -3.5034 34 1 6.0142 -1.1971 -2.5122 35 1 2.2377 -0.0849 2.1118 36 1 3.1839 -2.2188 0.0172 37 1 3.7450 -2.0965 1.7697 38 1 1.3559 -2.4210 2.5577 39 1 0.7945 -2.5436 0.8051 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269600659.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:56 Heat of formation + Delta-G solvation = 62.910992 kcal Electronic energy + Delta-G solvation = -22419.656238 eV Core-core repulsion = 19171.632762 eV Total energy + Delta-G solvation = -3248.023476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.32345 -41.10519 -38.15032 -36.52264 -34.84242 -33.40800 -32.48171 -31.46195 -30.55592 -27.59051 -25.56576 -24.30513 -23.05495 -22.88462 -22.78024 -21.04865 -20.21841 -19.51122 -19.20974 -17.17076 -17.03287 -16.85903 -16.20993 -15.86527 -15.50505 -15.38813 -15.03076 -14.95189 -14.73354 -14.45145 -13.78229 -13.48100 -13.41494 -13.19407 -12.95887 -12.80762 -12.33787 -12.20612 -12.13314 -12.05260 -11.91591 -11.72712 -11.14394 -11.02871 -10.87637 -10.79651 -10.33972 -9.92365 -9.63478 -8.84908 -7.90992 -5.15404 0.63986 1.23123 1.45551 1.46116 1.56284 1.83465 2.45515 2.57958 2.67872 3.04361 3.42360 3.71447 3.73977 3.97159 4.06691 4.09009 4.22567 4.25618 4.42791 4.44737 4.47075 4.63973 4.76525 4.87256 4.98991 5.01214 5.04199 5.16141 5.30327 5.37172 5.37907 5.41612 5.45719 5.52022 5.87567 6.25402 6.32389 6.51969 6.86711 7.39301 7.58582 8.16815 8.44494 9.32351 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.006661 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.773708 B = 4202.856118 C = 5533.876781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.210 3.790 3 C 0.139 3.861 4 N -0.728 5.728 5 C -0.236 4.236 6 H 0.062 0.938 7 C -0.073 4.073 8 N -0.964 5.964 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.295 1.295 12 H -0.290 1.290 13 N -0.706 5.706 14 C 0.599 3.401 15 O -0.573 6.573 16 C -0.316 4.316 17 C 0.086 3.914 18 N -0.319 5.319 19 N -0.450 5.450 20 H 0.459 0.541 21 C 0.138 3.862 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.151 4.151 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.014 0.986 29 H 0.033 0.967 30 H 0.377 0.623 31 H 0.249 0.751 32 H 0.404 0.596 33 H 0.209 0.791 34 H 0.208 0.792 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.382 -16.970 4.388 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.124 3.876 3 C 0.011 3.989 4 N -0.371 5.371 5 C -0.368 4.368 6 H 0.080 0.920 7 C -0.265 4.265 8 N -0.615 5.615 9 Si 0.796 3.204 10 H -0.198 1.198 11 H -0.223 1.223 12 H -0.217 1.217 13 N -0.357 5.357 14 C 0.388 3.612 15 O -0.453 6.453 16 C -0.331 4.331 17 C -0.102 4.102 18 N -0.140 5.140 19 N -0.157 5.157 20 H 0.307 0.693 21 C -0.016 4.016 22 C -0.182 4.182 23 C -0.206 4.206 24 C -0.188 4.188 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.210 0.790 31 H 0.058 0.942 32 H 0.240 0.760 33 H 0.226 0.774 34 H 0.225 0.775 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.077 -17.139 3.911 18.298 hybrid contribution 0.210 1.516 -0.385 1.578 sum 5.287 -15.623 3.526 16.866 Atomic orbital electron populations 1.21924 0.91845 1.03200 1.02790 1.19830 0.94433 0.89741 0.83605 1.21236 0.97823 0.90989 0.88808 1.42306 1.60943 1.09621 1.24210 1.19573 1.24100 0.89143 1.03984 0.91962 1.25394 1.01552 1.01983 0.97569 1.69790 1.41144 1.37178 1.13439 0.85171 0.77153 0.80843 0.77229 1.19772 1.22278 1.21675 1.45674 1.06819 1.56759 1.26408 1.17265 0.82370 0.78768 0.82774 1.90703 1.56947 1.46162 1.51508 1.20482 0.94382 1.13667 1.04535 1.24410 1.01216 0.93740 0.90786 1.77067 0.88051 1.25032 1.23884 1.46187 1.08467 1.38616 1.22476 0.69344 1.23322 0.99158 0.91103 0.88064 1.22431 1.06172 0.91223 0.98383 1.22910 0.94030 1.01775 1.01930 1.23051 0.96176 0.96674 1.02876 0.89348 0.90934 0.93305 0.96852 0.94952 0.79001 0.94193 0.76003 0.77413 0.77545 0.88145 0.89586 0.89566 0.87438 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.18 71.98 0.59 -3.40 16 2 C 0.21 6.83 0.55 3.60 0.00 6.83 16 3 C 0.14 6.12 4.83 86.38 0.42 6.53 16 4 N -0.73 -38.08 5.17 -343.45 -1.78 -39.86 16 5 C -0.24 -13.86 9.99 84.04 0.84 -13.02 16 6 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 8 N -0.96 -59.39 13.06 21.65 0.28 -59.11 16 9 Si 0.97 47.99 29.55 68.60 2.03 50.01 16 10 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 12 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 13 N -0.71 -21.67 4.19 -426.13 -1.79 -23.46 16 14 C 0.60 20.48 4.82 86.67 0.42 20.90 16 15 O -0.57 -23.54 13.17 -4.04 -0.05 -23.60 16 16 C -0.32 -8.99 6.13 -20.15 -0.12 -9.12 16 17 C 0.09 2.14 11.50 85.65 0.99 3.13 16 18 N -0.32 -7.91 12.63 -56.27 -0.71 -8.62 16 19 N -0.45 -8.81 7.29 -56.32 -0.41 -9.22 16 20 H 0.46 5.29 8.96 -213.43 -1.91 3.38 16 21 C 0.14 3.19 11.82 84.27 1.00 4.18 16 22 C -0.16 -4.56 4.86 -10.79 -0.05 -4.61 16 23 C -0.17 -4.40 8.53 30.60 0.26 -4.14 16 24 C -0.15 -3.12 9.68 30.60 0.30 -2.82 16 25 H 0.09 1.86 6.89 -2.39 -0.02 1.85 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.65 6.86 -2.39 -0.02 1.63 16 28 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.03 1.62 5.71 -2.39 -0.01 1.61 16 30 H 0.38 20.19 6.35 -92.71 -0.59 19.60 16 31 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.40 10.37 7.44 -92.71 -0.69 9.68 16 33 H 0.21 3.92 7.51 -2.91 -0.02 3.90 16 34 H 0.21 3.90 8.06 -2.91 -0.02 3.87 16 35 H 0.10 2.92 8.06 -2.39 -0.02 2.91 16 36 H 0.09 2.41 5.17 -2.39 -0.01 2.40 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 1.90 7.17 -2.39 -0.02 1.88 16 Total: -1.00 -76.48 319.69 0.58 -75.89 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -2.08 Total: 37.32 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: 5.10 Total: 0.64 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -4.40 Total: -140.27 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.01 kcal Total: -76.48 0.58 -75.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269600659.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.805 kcal (2) G-P(sol) polarization free energy of solvation -76.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds