Wall clock time and date at job start Tue Mar 31 2020 01:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47211 * 2 1 4 4 N 1.46498 * 109.47118 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00136 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38820 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31611 * 119.99874 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99804 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46806 * 90.00243 * 9 7 5 11 11 H 1.48496 * 109.46884 * 210.00319 * 9 7 5 12 12 H 1.48501 * 109.47178 * 330.00230 * 9 7 5 13 13 N 1.46503 * 109.46868 * 120.00381 * 2 1 3 14 14 C 1.34780 * 119.99581 * 304.29905 * 13 2 1 15 15 O 1.21599 * 120.00235 * 354.98207 * 14 13 2 16 16 C 1.47434 * 119.99714 * 174.98891 * 14 13 2 17 17 C 1.41284 * 126.41576 * 0.03593 * 16 14 13 18 18 N 1.30448 * 108.02311 * 179.70949 * 17 16 14 19 19 N 1.39931 * 108.89751 * 0.40686 * 18 17 16 20 20 H 0.96993 * 125.75972 * 179.84612 * 19 18 17 21 21 C 1.34261 * 108.48731 * 359.58600 * 19 18 17 22 22 C 1.52999 * 109.47093 * 239.99667 * 2 1 3 23 23 C 1.53005 * 117.49870 * 12.77129 * 22 2 1 24 24 C 1.53004 * 117.50087 * 304.11082 * 22 2 1 25 25 H 1.08999 * 109.47020 * 300.00381 * 1 2 3 26 26 H 1.08997 * 109.47065 * 60.00006 * 1 2 3 27 27 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47390 * 300.00007 * 3 2 1 29 29 H 1.08999 * 109.47440 * 59.99876 * 3 2 1 30 30 H 0.97002 * 119.99699 * 0.02562 * 4 3 2 31 31 H 0.97005 * 119.99627 * 180.02562 * 8 7 5 32 32 H 0.96993 * 120.00240 * 124.29459 * 13 2 1 33 33 H 1.08006 * 125.98962 * 0.02562 * 17 16 14 34 34 H 1.08004 * 126.28977 * 180.26456 * 21 19 18 35 35 H 1.09002 * 115.54998 * 158.43383 * 22 2 1 36 36 H 1.09001 * 117.49622 * 359.97438 * 23 22 2 37 37 H 1.09001 * 117.49942 * 145.01683 * 23 22 2 38 38 H 1.08997 * 117.49376 * 214.97462 * 24 22 2 39 39 H 1.08999 * 117.49743 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1898 2.6283 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5780 2.6282 0.0013 8 7 6.2360 3.7680 0.0024 9 14 6.5119 1.0104 0.0012 10 1 6.7594 0.5819 -1.3989 11 1 7.8093 1.1879 0.7014 12 1 5.7092 -0.0245 0.7011 13 7 2.0183 -0.6907 1.1962 14 6 1.6227 -0.2829 2.4184 15 8 0.9346 0.7129 2.5339 16 6 2.0245 -1.0443 3.6153 17 6 2.8179 -2.2131 3.6386 18 7 2.9560 -2.5825 4.8820 19 7 2.2600 -1.6863 5.7010 20 1 2.1984 -1.7326 6.6678 21 6 1.6966 -0.7482 4.9230 22 6 2.0400 -0.7213 -1.2492 23 6 1.0276 -1.0152 -2.3581 24 6 1.5580 -2.1543 -1.4838 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.9900 0.6023 0.0006 31 1 7.2060 3.7680 0.0021 32 1 2.6262 -1.4414 1.1085 33 1 3.2407 -2.7105 2.7781 34 1 1.0973 0.0852 5.2588 35 1 3.0590 -0.4775 -1.5498 36 1 -0.0018 -0.6950 -2.1974 37 1 1.3807 -0.9651 -3.3881 38 1 2.2598 -2.8531 -1.9392 39 1 0.8772 -2.5831 -0.7485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269600660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:01 Heat of formation + Delta-G solvation = 85.898898 kcal Electronic energy + Delta-G solvation = -22288.700324 eV Core-core repulsion = 19041.673679 eV Total energy + Delta-G solvation = -3247.026646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38448 -39.84460 -37.60153 -34.75611 -33.50361 -32.07187 -31.24123 -30.48095 -29.41876 -26.09921 -24.11817 -22.64100 -22.21876 -22.02293 -21.78386 -19.82662 -18.84163 -18.56706 -17.60632 -16.55956 -15.51912 -15.16269 -15.08213 -14.67708 -14.58701 -14.20837 -14.03228 -13.69631 -13.03272 -12.89372 -12.75431 -12.34417 -12.18942 -12.00410 -11.65946 -11.28643 -11.09180 -10.88595 -10.83564 -10.71989 -10.26207 -10.17915 -9.96432 -9.88642 -9.51078 -9.35896 -8.89600 -8.75535 -8.54927 -7.08514 -5.67831 -3.00734 1.53040 2.15004 2.58886 3.38348 3.39780 3.40644 3.48132 3.72998 4.05063 4.56742 4.65498 4.72565 4.76983 5.00988 5.10071 5.14359 5.25756 5.30322 5.35928 5.56703 5.63583 5.68841 5.77415 5.91576 5.99247 6.01998 6.16546 6.20277 6.26618 6.38160 6.53926 6.61728 6.91155 6.95636 7.10892 7.35620 7.92608 8.10838 8.51322 8.65342 9.31683 10.03922 10.25160 11.51298 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.007474 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.751467 B = 3745.351554 C = 4951.818378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.201 3.799 3 C 0.149 3.851 4 N -0.749 5.749 5 C -0.232 4.232 6 H 0.089 0.911 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.882 3.118 10 H -0.286 1.286 11 H -0.293 1.293 12 H -0.278 1.278 13 N -0.710 5.710 14 C 0.600 3.400 15 O -0.540 6.540 16 C -0.284 4.284 17 C 0.084 3.916 18 N -0.300 5.300 19 N -0.467 5.467 20 H 0.443 0.557 21 C 0.130 3.870 22 C -0.155 4.155 23 C -0.169 4.169 24 C -0.183 4.183 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.358 0.642 31 H 0.257 0.743 32 H 0.394 0.606 33 H 0.188 0.812 34 H 0.191 0.809 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 -15.377 5.011 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.116 3.884 3 C 0.021 3.979 4 N -0.395 5.395 5 C -0.362 4.362 6 H 0.107 0.893 7 C -0.195 4.195 8 N -0.587 5.587 9 Si 0.713 3.287 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.204 1.204 13 N -0.360 5.360 14 C 0.387 3.613 15 O -0.418 6.418 16 C -0.299 4.299 17 C -0.104 4.104 18 N -0.121 5.121 19 N -0.172 5.172 20 H 0.287 0.713 21 C -0.022 4.022 22 C -0.174 4.174 23 C -0.207 4.207 24 C -0.220 4.220 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.191 0.809 31 H 0.067 0.933 32 H 0.228 0.772 33 H 0.205 0.795 34 H 0.208 0.792 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.108 -15.283 5.854 20.358 hybrid contribution 0.975 -0.841 -0.123 1.294 sum -11.133 -16.124 5.731 20.415 Atomic orbital electron populations 1.22276 0.94366 1.01703 1.03813 1.20056 0.93476 0.93003 0.81904 1.21050 0.85018 0.91801 0.99986 1.42587 1.00823 1.04995 1.91086 1.19087 0.89442 0.85963 1.41696 0.89309 1.24640 0.96087 0.96070 1.02684 1.69699 1.06786 1.23756 1.58420 0.86572 0.79782 0.84819 0.77550 1.21266 1.21940 1.20426 1.45716 1.49612 1.35585 1.05106 1.17049 0.79237 0.83137 0.81894 1.90712 1.39569 1.25266 1.86292 1.20440 1.12950 1.02370 0.94175 1.24085 0.96230 0.94726 0.95388 1.77118 1.17755 1.14996 1.02225 1.46191 1.40166 1.20956 1.09927 0.71280 1.23046 0.95349 0.93302 0.90530 1.22557 1.00533 0.97353 0.96971 1.23069 0.99355 1.02464 0.95766 1.22973 1.04062 0.91369 1.03580 0.89936 0.91486 0.92919 0.95065 0.92913 0.80944 0.93269 0.77211 0.79505 0.79167 0.86630 0.88030 0.88801 0.88973 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 6.98 37.16 0.26 -2.00 16 2 C 0.20 3.15 0.54 -131.82 -0.07 3.08 16 3 C 0.15 3.09 5.03 -4.05 -0.02 3.07 16 4 N -0.75 -18.12 4.84 -59.91 -0.29 -18.41 16 5 C -0.23 -6.77 10.47 -15.06 -0.16 -6.93 16 6 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 7 C 0.00 0.00 5.50 -17.43 -0.10 -0.09 16 8 N -0.94 -30.22 13.97 55.49 0.78 -29.44 16 9 Si 0.88 22.46 27.74 -169.99 -4.71 17.74 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 12 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 13 N -0.71 -10.64 4.72 -48.67 -0.23 -10.86 16 14 C 0.60 9.77 7.22 -12.51 -0.09 9.68 16 15 O -0.54 -10.32 13.13 5.28 0.07 -10.25 16 16 C -0.28 -3.91 6.13 -105.07 -0.64 -4.55 16 17 C 0.08 1.03 11.51 -16.98 -0.20 0.84 16 18 N -0.30 -3.73 12.63 30.86 0.39 -3.34 16 19 N -0.47 -4.58 7.29 30.85 0.22 -4.36 16 20 H 0.44 2.65 8.96 -182.73 -1.64 1.01 16 21 C 0.13 1.46 11.82 -16.56 -0.20 1.26 16 22 C -0.16 -2.18 4.84 -90.62 -0.44 -2.62 16 23 C -0.17 -1.95 9.64 -26.69 -0.26 -2.21 16 24 C -0.18 -1.97 9.82 -26.69 -0.26 -2.24 16 25 H 0.08 1.30 6.03 -51.93 -0.31 0.99 16 26 H 0.07 0.85 6.78 -51.93 -0.35 0.50 16 27 H 0.05 0.63 6.98 -51.93 -0.36 0.27 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 1.22 6.32 -51.93 -0.33 0.90 16 30 H 0.36 8.30 4.49 -40.82 -0.18 8.12 16 31 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.39 5.09 7.45 -40.82 -0.30 4.79 16 33 H 0.19 1.79 7.51 -52.48 -0.39 1.39 16 34 H 0.19 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.12 1.89 7.09 -51.93 -0.37 1.52 16 36 H 0.10 1.09 5.88 -51.93 -0.31 0.78 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.95 7.34 -51.93 -0.38 0.56 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -36.28 318.22 -7.36 -43.64 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -6.21 Total: 13.20 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.17 Total: -2.70 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: 0.87 Total: -66.42 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.28 -7.36 -43.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269600660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.538 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds