Wall clock time and date at job start Tue Mar 31 2020 01:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47211 * 2 1 4 4 N 1.46498 * 109.47118 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00136 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38820 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31611 * 119.99874 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99804 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46806 * 90.00243 * 9 7 5 11 11 H 1.48496 * 109.46884 * 210.00319 * 9 7 5 12 12 H 1.48501 * 109.47178 * 330.00230 * 9 7 5 13 13 N 1.46503 * 109.46868 * 120.00381 * 2 1 3 14 14 C 1.34780 * 119.99581 * 304.29905 * 13 2 1 15 15 O 1.21599 * 120.00235 * 354.98207 * 14 13 2 16 16 C 1.47434 * 119.99714 * 174.98891 * 14 13 2 17 17 C 1.41284 * 126.41576 * 0.03593 * 16 14 13 18 18 N 1.30448 * 108.02311 * 179.70949 * 17 16 14 19 19 N 1.39931 * 108.89751 * 0.40686 * 18 17 16 20 20 H 0.96993 * 125.75972 * 179.84612 * 19 18 17 21 21 C 1.34261 * 108.48731 * 359.58600 * 19 18 17 22 22 C 1.52999 * 109.47093 * 239.99667 * 2 1 3 23 23 C 1.53005 * 117.49870 * 12.77129 * 22 2 1 24 24 C 1.53004 * 117.50087 * 304.11082 * 22 2 1 25 25 H 1.08999 * 109.47020 * 300.00381 * 1 2 3 26 26 H 1.08997 * 109.47065 * 60.00006 * 1 2 3 27 27 H 1.09002 * 109.47042 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47390 * 300.00007 * 3 2 1 29 29 H 1.08999 * 109.47440 * 59.99876 * 3 2 1 30 30 H 0.97002 * 119.99699 * 0.02562 * 4 3 2 31 31 H 0.97005 * 119.99627 * 180.02562 * 8 7 5 32 32 H 0.96993 * 120.00240 * 124.29459 * 13 2 1 33 33 H 1.08006 * 125.98962 * 0.02562 * 17 16 14 34 34 H 1.08004 * 126.28977 * 180.26456 * 21 19 18 35 35 H 1.09002 * 115.54998 * 158.43383 * 22 2 1 36 36 H 1.09001 * 117.49622 * 359.97438 * 23 22 2 37 37 H 1.09001 * 117.49942 * 145.01683 * 23 22 2 38 38 H 1.08997 * 117.49376 * 214.97462 * 24 22 2 39 39 H 1.08999 * 117.49743 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1898 2.6283 0.0013 6 1 3.6498 3.5636 0.0009 7 6 5.5780 2.6282 0.0013 8 7 6.2360 3.7680 0.0024 9 14 6.5119 1.0104 0.0012 10 1 6.7594 0.5819 -1.3989 11 1 7.8093 1.1879 0.7014 12 1 5.7092 -0.0245 0.7011 13 7 2.0183 -0.6907 1.1962 14 6 1.6227 -0.2829 2.4184 15 8 0.9346 0.7129 2.5339 16 6 2.0245 -1.0443 3.6153 17 6 2.8179 -2.2131 3.6386 18 7 2.9560 -2.5825 4.8820 19 7 2.2600 -1.6863 5.7010 20 1 2.1984 -1.7326 6.6678 21 6 1.6966 -0.7482 4.9230 22 6 2.0400 -0.7213 -1.2492 23 6 1.0276 -1.0152 -2.3581 24 6 1.5580 -2.1543 -1.4838 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.9900 0.6023 0.0006 31 1 7.2060 3.7680 0.0021 32 1 2.6262 -1.4414 1.1085 33 1 3.2407 -2.7105 2.7781 34 1 1.0973 0.0852 5.2588 35 1 3.0590 -0.4775 -1.5498 36 1 -0.0018 -0.6950 -2.1974 37 1 1.3807 -0.9651 -3.3881 38 1 2.2598 -2.8531 -1.9392 39 1 0.8772 -2.5831 -0.7485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269600660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:58 Heat of formation + Delta-G solvation = 58.137650 kcal Electronic energy + Delta-G solvation = -22289.904142 eV Core-core repulsion = 19041.673679 eV Total energy + Delta-G solvation = -3248.230464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.31762 -41.03270 -38.76037 -36.46951 -34.96517 -33.49929 -32.71285 -31.77417 -30.54186 -27.75919 -25.44270 -23.97833 -23.54562 -23.04693 -22.92125 -20.84948 -20.24804 -19.61500 -19.55380 -17.57035 -16.82978 -16.55176 -16.41381 -16.11485 -15.53328 -15.43074 -15.34719 -15.09297 -14.68843 -14.39683 -13.82605 -13.80579 -13.77347 -13.34683 -13.13232 -12.83021 -12.32836 -12.28660 -12.16615 -11.98139 -11.89857 -11.80700 -11.21122 -11.06400 -10.92516 -10.83201 -10.52673 -10.01410 -9.69229 -9.22960 -8.01323 -5.33019 0.59894 1.18135 1.33552 1.39911 1.46961 1.79813 2.30961 2.48650 2.58180 3.08347 3.29566 3.57826 3.68097 3.78680 3.92745 3.94936 4.16329 4.19151 4.23526 4.40029 4.44151 4.60529 4.79994 4.84625 4.91310 4.95339 5.03131 5.08266 5.16185 5.31945 5.36313 5.37812 5.48245 5.73078 5.78759 6.21907 6.22956 6.48902 6.79210 7.09661 7.46796 7.85150 8.08850 9.20976 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.007474 C = 0.005653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.751467 B = 3745.351554 C = 4951.818378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.211 3.789 3 C 0.148 3.852 4 N -0.743 5.743 5 C -0.230 4.230 6 H 0.046 0.954 7 C -0.068 4.068 8 N -0.987 5.987 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.298 1.298 12 H -0.247 1.247 13 N -0.705 5.705 14 C 0.594 3.406 15 O -0.579 6.579 16 C -0.317 4.317 17 C 0.086 3.914 18 N -0.319 5.319 19 N -0.450 5.450 20 H 0.459 0.541 21 C 0.141 3.859 22 C -0.183 4.183 23 C -0.165 4.165 24 C -0.153 4.153 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.366 0.634 31 H 0.257 0.743 32 H 0.406 0.594 33 H 0.211 0.789 34 H 0.210 0.790 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.571 -19.027 5.047 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.125 3.875 3 C 0.021 3.979 4 N -0.388 5.388 5 C -0.361 4.361 6 H 0.064 0.936 7 C -0.259 4.259 8 N -0.638 5.638 9 Si 0.783 3.217 10 H -0.199 1.199 11 H -0.225 1.225 12 H -0.172 1.172 13 N -0.355 5.355 14 C 0.383 3.617 15 O -0.460 6.460 16 C -0.332 4.332 17 C -0.102 4.102 18 N -0.140 5.140 19 N -0.157 5.157 20 H 0.307 0.693 21 C -0.013 4.013 22 C -0.202 4.202 23 C -0.202 4.202 24 C -0.189 4.189 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.200 0.800 31 H 0.065 0.935 32 H 0.242 0.758 33 H 0.227 0.773 34 H 0.227 0.773 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.546 -19.000 5.909 23.523 hybrid contribution 1.024 0.419 -0.091 1.110 sum -11.522 -18.581 5.818 22.624 Atomic orbital electron populations 1.22196 0.92758 1.03128 1.03196 1.19836 0.94497 0.89867 0.83287 1.21108 0.82972 0.95764 0.98050 1.42445 1.02165 1.03554 1.90684 1.19019 0.89835 0.86370 1.40862 0.93583 1.25531 0.97048 1.00458 1.02821 1.69906 1.07017 1.26808 1.60111 0.85380 0.77743 0.80232 0.78330 1.19872 1.22545 1.17155 1.45686 1.49616 1.35600 1.04622 1.17476 0.78605 0.82798 0.82845 1.90696 1.41377 1.27031 1.86888 1.20408 1.15175 1.03579 0.94052 1.24434 0.95558 0.94092 0.96082 1.77085 1.18563 1.15879 1.02517 1.46210 1.38887 1.19895 1.10708 0.69267 1.23365 0.94417 0.93409 0.90105 1.22324 1.00070 1.00551 0.97209 1.23201 0.99076 1.02408 0.95525 1.23066 1.03400 0.89757 1.02717 0.92175 0.90541 0.90324 0.95822 0.95909 0.79957 0.93462 0.75818 0.77270 0.77328 0.88982 0.87105 0.88174 0.87366 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 6.98 71.98 0.50 -3.55 16 2 C 0.21 6.39 0.54 3.60 0.00 6.39 16 3 C 0.15 6.29 5.03 86.38 0.43 6.72 16 4 N -0.74 -36.26 4.84 -343.46 -1.66 -37.92 16 5 C -0.23 -13.87 10.47 84.04 0.88 -12.99 16 6 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 7 C -0.07 -4.14 5.50 84.87 0.47 -3.68 16 8 N -0.99 -65.57 13.97 21.65 0.30 -65.27 16 9 Si 0.96 46.22 27.74 68.60 1.90 48.12 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 12 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 13 N -0.70 -20.01 4.72 -426.14 -2.01 -22.02 16 14 C 0.59 18.92 7.22 86.67 0.63 19.55 16 15 O -0.58 -22.48 13.13 -4.03 -0.05 -22.53 16 16 C -0.32 -8.21 6.13 -20.15 -0.12 -8.33 16 17 C 0.09 1.91 11.51 85.65 0.99 2.90 16 18 N -0.32 -7.15 12.63 -56.27 -0.71 -7.87 16 19 N -0.45 -7.78 7.29 -56.32 -0.41 -8.19 16 20 H 0.46 4.35 8.96 -213.44 -1.91 2.44 16 21 C 0.14 2.92 11.82 84.27 1.00 3.91 16 22 C -0.18 -4.71 4.84 -10.79 -0.05 -4.76 16 23 C -0.16 -3.29 9.64 30.62 0.30 -2.99 16 24 C -0.15 -2.66 9.82 30.62 0.30 -2.36 16 25 H 0.06 1.88 6.03 -2.39 -0.01 1.87 16 26 H 0.08 1.83 6.78 -2.39 -0.02 1.81 16 27 H 0.08 1.65 6.98 -2.39 -0.02 1.63 16 28 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.02 1.11 6.32 -2.39 -0.02 1.10 16 30 H 0.37 16.57 4.49 -92.71 -0.42 16.15 16 31 H 0.26 16.17 8.31 -92.70 -0.77 15.40 16 32 H 0.41 9.39 7.45 -92.71 -0.69 8.70 16 33 H 0.21 3.33 7.51 -2.91 -0.02 3.31 16 34 H 0.21 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.09 2.85 7.09 -2.39 -0.02 2.83 16 36 H 0.11 2.01 5.88 -2.39 -0.01 1.99 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.11 1.63 7.34 -2.39 -0.02 1.61 16 Total: -1.00 -81.61 318.22 0.71 -80.90 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: -1.97 Total: 33.97 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 5.31 Total: 0.81 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -4.49 Total: -141.26 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.53 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -81.61 0.71 -80.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269600660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.042 kcal (2) G-P(sol) polarization free energy of solvation -81.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds