Wall clock time and date at job start Tue Mar 31 2020 00:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47278 * 120.00121 * 2 1 3 5 5 H 1.08995 * 109.47098 * 59.99732 * 4 2 1 6 6 C 1.53004 * 109.47083 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21552 * 119.99818 * 359.97438 * 8 7 6 10 10 C 1.47829 * 119.99973 * 179.97438 * 8 7 6 11 11 C 1.39944 * 120.94167 * 359.71903 * 10 8 7 12 12 N 1.32149 * 118.92748 * 179.71674 * 11 10 8 13 13 C 1.31873 * 120.96462 * 0.57011 * 12 11 10 14 14 N 1.31864 * 122.09420 * 359.69874 * 13 12 11 15 15 C 1.32153 * 120.97140 * 0.02562 * 14 13 12 16 16 N 1.46498 * 109.47257 * 299.99798 * 4 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 4 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 4 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 4 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 H 1.09003 * 109.47146 * 299.99852 * 1 2 3 26 26 H 1.08996 * 109.47253 * 59.99946 * 1 2 3 27 27 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47146 * 240.00148 * 2 1 3 29 29 H 1.09003 * 109.46926 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47115 * 299.99600 * 3 2 1 31 31 H 1.08994 * 109.47213 * 60.00214 * 3 2 1 32 32 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 33 33 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 34 34 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 35 35 H 1.08005 * 120.53944 * 359.97438 * 11 10 8 36 36 H 1.07994 * 118.95047 * 179.72446 * 13 12 11 37 37 H 1.07998 * 120.54275 * 179.97438 * 15 14 13 38 38 H 0.97001 * 120.00384 * 265.00562 * 16 4 2 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2488 7 7 4.0584 -1.3056 2.5006 8 6 5.3835 -1.4096 2.7238 9 8 6.1733 -1.0195 1.8862 10 6 5.8763 -1.9982 3.9871 11 6 4.9846 -2.4482 4.9673 12 7 5.4686 -2.9729 6.0794 13 6 6.7693 -3.0647 6.2762 14 7 7.6443 -2.6483 5.3819 15 6 7.2479 -2.1154 4.2394 16 7 1.5518 -0.0307 2.4454 17 6 0.3079 -0.3170 2.9415 18 1 -0.3113 -1.0552 2.4535 19 6 -0.1571 0.3414 4.0716 20 7 0.5974 1.2414 4.6660 21 14 -1.8535 -0.0496 4.7487 22 1 -2.4954 -1.0898 3.9054 23 1 -1.7274 -0.5504 6.1411 24 1 -2.6862 1.1799 4.7384 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.9329 -1.3115 0.4071 33 1 3.9337 0.3018 1.1591 34 1 3.4282 -1.6165 3.1691 35 1 3.9180 -2.3718 4.8155 36 1 7.1293 -3.4950 7.1990 37 1 7.9706 -1.7763 3.5120 38 1 2.1078 0.6323 2.8837 39 1 0.2726 1.7012 5.4559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271830424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:52 Heat of formation + Delta-G solvation = 16.663013 kcal Electronic energy + Delta-G solvation = -21684.391752 eV Core-core repulsion = 18434.362813 eV Total energy + Delta-G solvation = -3250.028939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22624 -39.26526 -37.37060 -34.36076 -33.66909 -32.97936 -32.34296 -30.22749 -28.15562 -26.39365 -25.28865 -24.63128 -23.64095 -22.20846 -20.62506 -18.97135 -18.10187 -17.68769 -17.46719 -16.96599 -15.58573 -15.47416 -14.99157 -14.51484 -14.26045 -14.22629 -13.80349 -13.65578 -13.41066 -13.19437 -13.03545 -12.30390 -11.98779 -11.72055 -11.37642 -11.09273 -11.01436 -10.98291 -10.86293 -10.62317 -10.31821 -10.15468 -10.00574 -9.84523 -9.81393 -9.53675 -9.42985 -8.99500 -8.78376 -7.09831 -5.88300 -3.17646 0.34688 0.90374 2.89394 3.26136 3.35724 3.42381 3.44576 3.74518 3.93248 4.01502 4.35899 4.48754 4.69650 4.91282 5.17346 5.30647 5.36664 5.45596 5.62369 5.67975 5.76230 5.80744 6.02203 6.12917 6.15912 6.29233 6.35030 6.48502 6.56821 6.62635 6.71028 6.74267 6.81256 7.00267 7.29294 7.61831 7.67344 7.84910 8.27899 8.29853 9.41341 9.94855 10.30914 11.33223 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.005523 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.324103 B = 5068.864270 C = 6577.104656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.166 3.834 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.702 5.702 8 C 0.564 3.436 9 O -0.544 6.544 10 C -0.236 4.236 11 C 0.189 3.811 12 N -0.520 5.520 13 C 0.308 3.692 14 N -0.526 5.526 15 C 0.204 3.796 16 N -0.719 5.719 17 C -0.238 4.238 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.928 5.928 21 Si 0.901 3.099 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.088 0.912 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.177 0.823 36 H 0.200 0.800 37 H 0.180 0.820 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.267 -6.623 -2.960 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.056 3.944 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.353 5.353 8 C 0.348 3.652 9 O -0.423 6.423 10 C -0.243 4.243 11 C 0.022 3.978 12 N -0.233 5.233 13 C 0.021 3.979 14 N -0.240 5.240 15 C 0.037 3.963 16 N -0.361 5.361 17 C -0.369 4.369 18 H 0.092 0.908 19 C -0.206 4.206 20 N -0.576 5.576 21 Si 0.732 3.268 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.107 0.893 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.247 0.753 35 H 0.194 0.806 36 H 0.216 0.784 37 H 0.197 0.803 38 H 0.219 0.781 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.956 -6.820 -2.648 11.564 hybrid contribution -1.518 0.383 0.129 1.570 sum 7.438 -6.437 -2.519 10.154 Atomic orbital electron populations 1.21838 0.94961 1.00868 1.02134 1.21612 0.96846 0.96571 0.97847 1.21800 0.99664 0.96765 1.01721 1.20565 0.89127 0.96114 0.88601 0.92760 1.21852 0.95908 0.98705 0.84834 1.45902 1.06106 1.61644 1.21646 1.17741 0.82990 0.79010 0.85423 1.90762 1.55528 1.49884 1.46134 1.21894 0.97207 1.06658 0.98573 1.23674 1.01147 0.86227 0.86725 1.68505 1.16622 1.16056 1.22114 1.25246 0.84891 0.90311 0.97474 1.68549 1.40037 1.12360 1.03033 1.23478 0.93338 0.86967 0.92541 1.42451 1.17933 1.47614 1.28069 1.19230 0.92659 1.18049 1.06932 0.90834 1.24717 0.98221 0.99104 0.98530 1.69663 1.36728 1.28830 1.22339 0.86216 0.84344 0.77437 0.78764 1.20563 1.21920 1.21957 0.89341 0.94985 0.94122 0.93216 0.93654 0.94264 0.91233 0.91555 0.90918 0.75331 0.80569 0.78359 0.80290 0.78063 0.93506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.25 37.16 0.31 -2.10 16 2 C -0.11 -1.71 2.80 -90.62 -0.25 -1.97 16 3 C -0.14 -2.29 8.69 37.16 0.32 -1.97 16 4 C 0.17 2.82 2.35 -67.93 -0.16 2.66 16 5 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.11 1.72 5.02 -4.04 -0.02 1.70 16 7 N -0.70 -10.64 5.35 -61.25 -0.33 -10.97 16 8 C 0.56 8.71 7.79 -12.34 -0.10 8.62 16 9 O -0.54 -9.71 16.45 5.32 0.09 -9.62 16 10 C -0.24 -3.21 5.91 -104.69 -0.62 -3.83 16 11 C 0.19 2.50 10.81 -16.78 -0.18 2.32 16 12 N -0.52 -6.86 10.42 -14.25 -0.15 -7.01 16 13 C 0.31 3.52 12.27 -92.03 -1.13 2.39 16 14 N -0.53 -6.53 10.42 -14.24 -0.15 -6.68 16 15 C 0.20 2.59 10.88 -16.77 -0.18 2.41 16 16 N -0.72 -15.00 3.68 -53.43 -0.20 -15.20 16 17 C -0.24 -5.65 7.55 -15.06 -0.11 -5.76 16 18 H 0.07 1.73 7.38 -52.49 -0.39 1.34 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -25.58 13.06 55.49 0.72 -24.85 16 21 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.09 1.80 5.99 -51.93 -0.31 1.49 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.68 6.32 -51.93 -0.33 0.35 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.31 7.60 -51.93 -0.39 0.92 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.21 6.18 -51.93 -0.32 0.89 16 34 H 0.41 6.14 6.27 -40.82 -0.26 5.89 16 35 H 0.18 2.18 6.54 -52.48 -0.34 1.83 16 36 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.18 2.04 7.74 -52.49 -0.41 1.63 16 38 H 0.39 8.92 7.80 -40.82 -0.32 8.60 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -28.44 325.06 -7.51 -35.95 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.16 Total: 13.53 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.22 Total: 4.15 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.10 Total: -64.70 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.44 -7.51 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271830424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.611 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds