Wall clock time and date at job start Tue Mar 31 2020 00:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47278 * 120.00121 * 2 1 3 5 5 H 1.08995 * 109.47098 * 59.99732 * 4 2 1 6 6 C 1.53004 * 109.47083 * 179.97438 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34775 * 119.99947 * 180.02562 * 7 6 4 9 9 O 1.21552 * 119.99818 * 359.97438 * 8 7 6 10 10 C 1.47829 * 119.99973 * 179.97438 * 8 7 6 11 11 C 1.39944 * 120.94167 * 359.71903 * 10 8 7 12 12 N 1.32149 * 118.92748 * 179.71674 * 11 10 8 13 13 C 1.31873 * 120.96462 * 0.57011 * 12 11 10 14 14 N 1.31864 * 122.09420 * 359.69874 * 13 12 11 15 15 C 1.32153 * 120.97140 * 0.02562 * 14 13 12 16 16 N 1.46498 * 109.47257 * 299.99798 * 4 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 4 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 4 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 4 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 H 1.09003 * 109.47146 * 299.99852 * 1 2 3 26 26 H 1.08996 * 109.47253 * 59.99946 * 1 2 3 27 27 H 1.08995 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47146 * 240.00148 * 2 1 3 29 29 H 1.09003 * 109.46926 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47115 * 299.99600 * 3 2 1 31 31 H 1.08994 * 109.47213 * 60.00214 * 3 2 1 32 32 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 33 33 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 34 34 H 0.96997 * 120.00059 * 359.97438 * 7 6 4 35 35 H 1.08005 * 120.53944 * 359.97438 * 11 10 8 36 36 H 1.07994 * 118.95047 * 179.72446 * 13 12 11 37 37 H 1.07998 * 120.54275 * 179.97438 * 15 14 13 38 38 H 0.97001 * 120.00384 * 265.00562 * 16 4 2 39 39 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 3.5700 -0.7218 1.2488 7 7 4.0584 -1.3056 2.5006 8 6 5.3835 -1.4096 2.7238 9 8 6.1733 -1.0195 1.8862 10 6 5.8763 -1.9982 3.9871 11 6 4.9846 -2.4482 4.9673 12 7 5.4686 -2.9729 6.0794 13 6 6.7693 -3.0647 6.2762 14 7 7.6443 -2.6483 5.3819 15 6 7.2479 -2.1154 4.2394 16 7 1.5518 -0.0307 2.4454 17 6 0.3079 -0.3170 2.9415 18 1 -0.3113 -1.0552 2.4535 19 6 -0.1571 0.3414 4.0716 20 7 0.5974 1.2414 4.6660 21 14 -1.8535 -0.0496 4.7487 22 1 -2.4954 -1.0898 3.9054 23 1 -1.7274 -0.5504 6.1411 24 1 -2.6862 1.1799 4.7384 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.9329 -1.3115 0.4071 33 1 3.9337 0.3018 1.1591 34 1 3.4282 -1.6165 3.1691 35 1 3.9180 -2.3718 4.8155 36 1 7.1293 -3.4950 7.1990 37 1 7.9706 -1.7763 3.5120 38 1 2.1078 0.6323 2.8837 39 1 0.2726 1.7012 5.4559 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271830424.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:50 Heat of formation + Delta-G solvation = -1.588171 kcal Electronic energy + Delta-G solvation = -21685.183182 eV Core-core repulsion = 18434.362813 eV Total energy + Delta-G solvation = -3250.820370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.24718 -40.49847 -38.79494 -35.58067 -34.80641 -34.67266 -33.40298 -31.89518 -29.58424 -27.74370 -26.46114 -25.70975 -25.26029 -23.57138 -21.84598 -20.32234 -19.39600 -18.96440 -18.70833 -18.19841 -16.86969 -16.79664 -16.36713 -15.95955 -15.66510 -15.45401 -15.09776 -14.79315 -14.69327 -14.55794 -14.43924 -13.78442 -13.38623 -12.91506 -12.80880 -12.77914 -12.65885 -12.39744 -12.11779 -12.00821 -11.90985 -11.86146 -11.37198 -11.17905 -11.07557 -10.89468 -10.80390 -10.42182 -10.04177 -8.91163 -7.84439 -5.09803 -0.66080 -0.10241 1.50199 1.54072 1.60159 1.73614 2.07558 2.62325 2.72409 3.01596 3.08404 3.35156 3.49984 3.62859 3.80895 3.94839 3.97031 4.30170 4.32294 4.37749 4.46267 4.63874 4.71775 4.78988 4.98342 5.01033 5.14146 5.18235 5.25376 5.30231 5.35302 5.50345 5.62455 5.67606 5.72198 5.85793 6.36056 6.44202 6.87909 7.06206 7.45146 8.16865 8.41506 9.38257 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.005523 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.324103 B = 5068.864270 C = 6577.104656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.167 3.833 5 H 0.060 0.940 6 C 0.118 3.882 7 N -0.701 5.701 8 C 0.567 3.433 9 O -0.570 6.570 10 C -0.247 4.247 11 C 0.189 3.811 12 N -0.536 5.536 13 C 0.313 3.687 14 N -0.532 5.532 15 C 0.206 3.794 16 N -0.721 5.721 17 C -0.207 4.207 18 H 0.080 0.920 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.951 3.049 22 H -0.267 1.267 23 H -0.301 1.301 24 H -0.306 1.306 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.410 0.590 35 H 0.180 0.820 36 H 0.237 0.763 37 H 0.190 0.810 38 H 0.373 0.627 39 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.771 -8.031 -3.942 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.126 4.126 3 C -0.193 4.193 4 C 0.058 3.942 5 H 0.078 0.922 6 C -0.006 4.006 7 N -0.351 5.351 8 C 0.353 3.647 9 O -0.451 6.451 10 C -0.254 4.254 11 C 0.022 3.978 12 N -0.250 5.250 13 C 0.027 3.973 14 N -0.246 5.246 15 C 0.039 3.961 16 N -0.361 5.361 17 C -0.339 4.339 18 H 0.098 0.902 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.783 3.217 22 H -0.191 1.191 23 H -0.229 1.229 24 H -0.234 1.234 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.248 0.752 35 H 0.197 0.803 36 H 0.253 0.747 37 H 0.207 0.793 38 H 0.206 0.794 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.449 -8.273 -3.670 13.084 hybrid contribution -1.618 0.764 0.358 1.825 sum 7.831 -7.509 -3.312 11.344 Atomic orbital electron populations 1.21759 0.95624 1.00895 1.01162 1.21581 0.96179 0.96564 0.98250 1.21723 1.00219 0.96646 1.00745 1.20721 0.90086 0.95862 0.87490 0.92194 1.21759 0.94609 0.98567 0.85636 1.45880 1.06204 1.61453 1.21589 1.17923 0.82670 0.78413 0.85671 1.90743 1.56023 1.51182 1.47150 1.21716 0.97702 1.07939 0.98049 1.23747 1.01354 0.85892 0.86765 1.68577 1.17604 1.16733 1.22064 1.26012 0.84243 0.88860 0.98204 1.68653 1.40153 1.12692 1.03063 1.23692 0.93175 0.86312 0.92879 1.42522 1.16922 1.47452 1.29227 1.19483 0.93116 1.15954 1.05361 0.90243 1.25252 1.00754 1.00250 0.99909 1.69793 1.38060 1.30856 1.22974 0.85387 0.81649 0.76781 0.77848 1.19131 1.22932 1.23403 0.93032 0.93232 0.93521 0.90161 0.92725 0.92697 0.94685 0.89777 0.91949 0.75245 0.80328 0.74745 0.79303 0.79441 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.25 71.98 0.59 -3.80 16 2 C -0.10 -3.09 2.80 -10.80 -0.03 -3.12 16 3 C -0.14 -4.17 8.69 71.98 0.63 -3.55 16 4 C 0.17 5.38 2.35 44.99 0.11 5.49 16 5 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 6 C 0.12 3.48 5.02 86.38 0.43 3.92 16 7 N -0.70 -20.63 5.35 -465.99 -2.49 -23.12 16 8 C 0.57 17.11 7.79 86.78 0.68 17.79 16 9 O -0.57 -19.87 16.45 -3.88 -0.06 -19.93 16 10 C -0.25 -6.51 5.91 -19.91 -0.12 -6.63 16 11 C 0.19 4.86 10.81 85.06 0.92 5.78 16 12 N -0.54 -13.41 10.42 -198.98 -2.07 -15.48 16 13 C 0.31 6.51 12.27 180.84 2.22 8.73 16 14 N -0.53 -12.26 10.42 -198.98 -2.07 -14.33 16 15 C 0.21 5.00 10.88 85.06 0.93 5.93 16 16 N -0.72 -29.85 3.68 -322.94 -1.19 -31.04 16 17 C -0.21 -9.75 7.55 84.03 0.63 -9.12 16 18 H 0.08 3.63 7.38 -2.91 -0.02 3.60 16 19 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.97 -54.52 13.06 21.65 0.28 -54.24 16 21 Si 0.95 43.30 29.55 68.60 2.03 45.32 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 25 H 0.05 2.04 5.99 -2.39 -0.01 2.03 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.56 6.32 -2.39 -0.02 1.54 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.31 7.60 -2.39 -0.02 1.29 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.00 6.18 -2.39 -0.01 1.99 16 34 H 0.41 12.05 6.27 -92.71 -0.58 11.47 16 35 H 0.18 4.36 6.54 -2.91 -0.02 4.34 16 36 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.19 4.09 7.74 -2.91 -0.02 4.07 16 38 H 0.37 17.47 7.80 -92.71 -0.72 16.75 16 39 H 0.24 13.82 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -60.64 325.06 1.65 -58.99 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.22 Total: 35.55 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 7.45 Total: 18.29 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -7.54 Total: -138.22 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.06 Total: -19.93 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -60.64 1.65 -58.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271830424.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.400 kcal (2) G-P(sol) polarization free energy of solvation -60.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds