Wall clock time and date at job start Tue Mar 31 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47200 * 2 1 4 4 C 1.52996 * 109.47325 * 120.00492 * 2 1 3 5 5 H 1.09001 * 109.47220 * 184.99743 * 4 2 1 6 6 C 1.53005 * 109.47535 * 64.99812 * 4 2 1 7 7 N 1.46494 * 109.47433 * 185.00060 * 6 4 2 8 8 C 1.34774 * 120.00299 * 179.97438 * 7 6 4 9 9 O 1.21554 * 119.99792 * 0.02562 * 8 7 6 10 10 C 1.47831 * 120.00367 * 180.02562 * 8 7 6 11 11 C 1.39949 * 120.94280 * 180.02562 * 10 8 7 12 12 N 1.32137 * 118.92697 * 180.02562 * 11 10 8 13 13 C 1.31874 * 120.96728 * 359.97438 * 12 11 10 14 14 N 1.31870 * 122.09471 * 0.02562 * 13 12 11 15 15 C 1.32145 * 120.96413 * 359.97438 * 14 13 12 16 16 N 1.46497 * 109.46971 * 304.99611 * 4 2 1 17 17 C 1.36935 * 120.00417 * 275.00300 * 16 4 2 18 18 H 1.08003 * 119.99654 * 359.97438 * 17 16 4 19 19 C 1.38806 * 120.00084 * 180.02562 * 17 16 4 20 20 N 1.31618 * 120.00162 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00135 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47407 * 89.99476 * 21 19 17 23 23 H 1.48494 * 109.47503 * 209.99947 * 21 19 17 24 24 H 1.48505 * 109.46964 * 329.99974 * 21 19 17 25 25 H 1.09000 * 109.47308 * 299.99434 * 1 2 3 26 26 H 1.08993 * 109.47611 * 59.99810 * 1 2 3 27 27 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46973 * 239.99946 * 2 1 3 29 29 H 1.09006 * 109.47202 * 60.00086 * 3 2 1 30 30 H 1.08997 * 109.47157 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47306 * 300.00002 * 3 2 1 32 32 H 1.09002 * 109.47028 * 64.99800 * 6 4 2 33 33 H 1.08996 * 109.46799 * 305.00424 * 6 4 2 34 34 H 0.97001 * 120.00009 * 0.02562 * 7 6 4 35 35 H 1.08004 * 120.53321 * 359.97438 * 11 10 8 36 36 H 1.07998 * 118.95288 * 179.71814 * 13 12 11 37 37 H 1.08004 * 120.53035 * 180.02562 * 15 14 13 38 38 H 0.97001 * 120.00008 * 95.00191 * 16 4 2 39 39 H 0.97004 * 119.99754 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1263 -0.6444 1.2950 6 6 1.6352 -2.1956 1.1879 7 7 2.0184 -2.8595 2.4362 8 6 1.7588 -4.1706 2.6094 9 8 1.2071 -4.8024 1.7296 10 6 2.1449 -4.8405 3.8694 11 6 1.8853 -6.2010 4.0699 12 7 2.2471 -6.7593 5.2117 13 6 2.8441 -6.0541 6.1526 14 7 3.1076 -4.7704 6.0053 15 6 2.7804 -4.1321 4.8955 16 7 1.4559 -0.1038 2.4423 17 6 2.0442 1.0001 2.9997 18 1 2.9390 1.4152 2.5598 19 6 1.4910 1.5848 4.1305 20 7 0.4008 1.0787 4.6668 21 14 2.2938 3.0902 4.8913 22 1 1.7227 4.3176 4.2809 23 1 2.0398 3.1006 6.3543 24 1 3.7575 3.0492 4.6433 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.1407 -2.6766 0.3505 33 1 0.5563 -2.2708 1.0526 34 1 2.4583 -2.3554 3.1385 35 1 1.3964 -6.7850 3.3042 36 1 3.1217 -6.5423 7.0751 37 1 2.9999 -3.0807 4.7821 38 1 0.6525 -0.4768 2.8376 39 1 0.0145 1.4872 5.4573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271830425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:54 Heat of formation + Delta-G solvation = 16.095943 kcal Electronic energy + Delta-G solvation = -21677.791706 eV Core-core repulsion = 18427.738177 eV Total energy + Delta-G solvation = -3250.053529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.22639 -39.26149 -37.35495 -34.36210 -33.67077 -32.97486 -32.34518 -30.22976 -28.12308 -26.43511 -25.28762 -24.62903 -23.63482 -22.18861 -20.62187 -18.98480 -18.11011 -17.68529 -17.46723 -16.96528 -15.56521 -15.47568 -14.98913 -14.51149 -14.25196 -14.22422 -13.80320 -13.65807 -13.43154 -13.17890 -13.03868 -12.28771 -12.01040 -11.72029 -11.35809 -11.07093 -11.01458 -10.99497 -10.87241 -10.61461 -10.33661 -10.18292 -10.00999 -9.84348 -9.81781 -9.52833 -9.42962 -8.99727 -8.78670 -7.09810 -5.87992 -3.17438 0.34716 0.90476 2.89438 3.26142 3.36140 3.42152 3.44108 3.74588 3.93304 4.01559 4.35948 4.48913 4.69700 4.91325 5.17345 5.30521 5.36795 5.45626 5.62411 5.68014 5.77636 5.81082 6.02267 6.12946 6.16199 6.29578 6.34675 6.46748 6.57019 6.62266 6.71110 6.76107 6.80884 7.02468 7.24921 7.61213 7.67381 7.84955 8.28053 8.30010 9.41551 9.95121 10.31206 11.33445 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.005520 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.355772 B = 5071.533486 C = 6569.969120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.166 3.834 5 H 0.055 0.945 6 C 0.112 3.888 7 N -0.702 5.702 8 C 0.564 3.436 9 O -0.544 6.544 10 C -0.236 4.236 11 C 0.204 3.796 12 N -0.526 5.526 13 C 0.308 3.692 14 N -0.520 5.520 15 C 0.189 3.811 16 N -0.718 5.718 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.928 5.928 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.180 0.820 36 H 0.200 0.800 37 H 0.177 0.823 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.346 -9.591 -3.062 10.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.056 3.944 5 H 0.073 0.927 6 C -0.012 4.012 7 N -0.353 5.353 8 C 0.348 3.652 9 O -0.423 6.423 10 C -0.243 4.243 11 C 0.037 3.963 12 N -0.240 5.240 13 C 0.021 3.979 14 N -0.233 5.233 15 C 0.022 3.978 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.247 0.753 35 H 0.197 0.803 36 H 0.216 0.784 37 H 0.194 0.806 38 H 0.220 0.780 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.333 -10.319 -2.758 11.527 hybrid contribution 0.032 1.560 0.169 1.569 sum 4.366 -8.759 -2.589 10.124 Atomic orbital electron populations 1.21774 0.95651 1.00627 1.01768 1.21605 0.96206 0.97190 0.97848 1.21840 0.99554 0.96348 1.02179 1.20571 0.96985 0.88237 0.88618 0.92739 1.21827 1.00897 0.93571 0.84940 1.45898 1.60174 1.08813 1.20406 1.17742 0.79296 0.82365 0.85760 1.90762 1.43104 1.65117 1.43325 1.21892 1.06324 0.97808 0.98299 1.23473 0.88696 0.90857 0.93303 1.68549 1.13083 1.40139 1.02201 1.25250 0.88416 0.86951 0.97312 1.68503 1.20097 1.10901 1.23788 1.23673 0.86963 1.00551 0.86589 1.42437 1.31933 1.33239 1.28419 1.19184 1.07171 1.03986 1.06659 0.90886 1.24713 0.97761 0.99437 0.98609 1.69651 1.21900 1.42197 1.23822 0.86284 0.78649 0.83248 0.78542 1.21781 1.21873 1.20771 0.90955 0.94381 0.93798 0.93213 0.89556 0.94135 0.94822 0.91552 0.91032 0.75323 0.80292 0.78357 0.80573 0.78045 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.74 37.16 0.32 -1.98 16 2 C -0.11 -1.71 2.74 -90.63 -0.25 -1.96 16 3 C -0.14 -2.39 8.46 37.15 0.31 -2.07 16 4 C 0.17 2.82 2.29 -67.93 -0.16 2.67 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.74 5.10 -4.04 -0.02 1.72 16 7 N -0.70 -10.65 5.35 -61.26 -0.33 -10.98 16 8 C 0.56 8.72 7.79 -12.34 -0.10 8.63 16 9 O -0.54 -9.72 16.45 5.32 0.09 -9.63 16 10 C -0.24 -3.21 5.91 -104.69 -0.62 -3.83 16 11 C 0.20 2.59 10.88 -16.78 -0.18 2.41 16 12 N -0.53 -6.53 10.42 -14.24 -0.15 -6.68 16 13 C 0.31 3.52 12.27 -92.02 -1.13 2.39 16 14 N -0.52 -6.86 10.42 -14.24 -0.15 -7.01 16 15 C 0.19 2.50 10.81 -16.78 -0.18 2.32 16 16 N -0.72 -15.00 3.53 -53.43 -0.19 -15.19 16 17 C -0.24 -5.68 7.75 -15.06 -0.12 -5.80 16 18 H 0.07 1.71 7.32 -52.48 -0.38 1.33 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -25.58 13.06 55.49 0.72 -24.86 16 21 Si 0.90 20.83 29.55 -169.99 -5.02 15.80 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H 0.07 1.40 7.47 -51.93 -0.39 1.01 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.68 6.46 -51.93 -0.34 0.34 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.72 5.99 -51.93 -0.31 1.41 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 34 H 0.41 6.16 6.28 -40.82 -0.26 5.90 16 35 H 0.18 2.04 7.75 -52.48 -0.41 1.63 16 36 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.18 2.18 6.54 -52.48 -0.34 1.83 16 38 H 0.39 8.92 7.80 -40.82 -0.32 8.60 16 39 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 325.43 15.07 4.90 4.90 Total: -1.00 -28.41 325.43 -7.49 -35.90 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -5.16 Total: 13.56 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.21 Total: 4.17 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.09 Total: -64.71 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.41 -7.49 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271830425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.999 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds