Wall clock time and date at job start Tue Mar 31 2020 00:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47200 * 2 1 4 4 C 1.52996 * 109.47325 * 120.00492 * 2 1 3 5 5 H 1.09001 * 109.47220 * 184.99743 * 4 2 1 6 6 C 1.53005 * 109.47535 * 64.99812 * 4 2 1 7 7 N 1.46494 * 109.47433 * 185.00060 * 6 4 2 8 8 C 1.34774 * 120.00299 * 179.97438 * 7 6 4 9 9 O 1.21554 * 119.99792 * 0.02562 * 8 7 6 10 10 C 1.47831 * 120.00367 * 180.02562 * 8 7 6 11 11 C 1.39949 * 120.94280 * 180.02562 * 10 8 7 12 12 N 1.32137 * 118.92697 * 180.02562 * 11 10 8 13 13 C 1.31874 * 120.96728 * 359.97438 * 12 11 10 14 14 N 1.31870 * 122.09471 * 0.02562 * 13 12 11 15 15 C 1.32145 * 120.96413 * 359.97438 * 14 13 12 16 16 N 1.46497 * 109.46971 * 304.99611 * 4 2 1 17 17 C 1.36935 * 120.00417 * 275.00300 * 16 4 2 18 18 H 1.08003 * 119.99654 * 359.97438 * 17 16 4 19 19 C 1.38806 * 120.00084 * 180.02562 * 17 16 4 20 20 N 1.31618 * 120.00162 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00135 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47407 * 89.99476 * 21 19 17 23 23 H 1.48494 * 109.47503 * 209.99947 * 21 19 17 24 24 H 1.48505 * 109.46964 * 329.99974 * 21 19 17 25 25 H 1.09000 * 109.47308 * 299.99434 * 1 2 3 26 26 H 1.08993 * 109.47611 * 59.99810 * 1 2 3 27 27 H 1.09007 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46973 * 239.99946 * 2 1 3 29 29 H 1.09006 * 109.47202 * 60.00086 * 3 2 1 30 30 H 1.08997 * 109.47157 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47306 * 300.00002 * 3 2 1 32 32 H 1.09002 * 109.47028 * 64.99800 * 6 4 2 33 33 H 1.08996 * 109.46799 * 305.00424 * 6 4 2 34 34 H 0.97001 * 120.00009 * 0.02562 * 7 6 4 35 35 H 1.08004 * 120.53321 * 359.97438 * 11 10 8 36 36 H 1.07998 * 118.95288 * 179.71814 * 13 12 11 37 37 H 1.08004 * 120.53035 * 180.02562 * 15 14 13 38 38 H 0.97001 * 120.00008 * 95.00191 * 16 4 2 39 39 H 0.97004 * 119.99754 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1263 -0.6444 1.2950 6 6 1.6352 -2.1956 1.1879 7 7 2.0184 -2.8595 2.4362 8 6 1.7588 -4.1706 2.6094 9 8 1.2071 -4.8024 1.7296 10 6 2.1449 -4.8405 3.8694 11 6 1.8853 -6.2010 4.0699 12 7 2.2471 -6.7593 5.2117 13 6 2.8441 -6.0541 6.1526 14 7 3.1076 -4.7704 6.0053 15 6 2.7804 -4.1321 4.8955 16 7 1.4559 -0.1038 2.4423 17 6 2.0442 1.0001 2.9997 18 1 2.9390 1.4152 2.5598 19 6 1.4910 1.5848 4.1305 20 7 0.4008 1.0787 4.6668 21 14 2.2938 3.0902 4.8913 22 1 1.7227 4.3176 4.2809 23 1 2.0398 3.1006 6.3543 24 1 3.7575 3.0492 4.6433 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 2.1407 -2.6766 0.3505 33 1 0.5563 -2.2708 1.0526 34 1 2.4583 -2.3554 3.1385 35 1 1.3964 -6.7850 3.3042 36 1 3.1217 -6.5423 7.0751 37 1 2.9999 -3.0807 4.7821 38 1 0.6525 -0.4768 2.8376 39 1 0.0145 1.4872 5.4573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271830425.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:54 Heat of formation + Delta-G solvation = -2.072411 kcal Electronic energy + Delta-G solvation = -21678.579545 eV Core-core repulsion = 18427.738177 eV Total energy + Delta-G solvation = -3250.841368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24769 -40.49536 -38.78029 -35.58167 -34.80196 -34.67668 -33.40569 -31.89417 -29.55398 -27.78710 -26.45539 -25.70728 -25.26047 -23.54516 -21.84577 -20.33833 -19.39977 -18.96327 -18.70615 -18.20100 -16.85432 -16.79624 -16.36892 -15.94728 -15.67280 -15.44497 -15.09188 -14.81283 -14.69455 -14.54872 -14.43706 -13.77487 -13.40093 -12.88329 -12.78655 -12.76864 -12.69178 -12.40337 -12.11911 -12.00861 -11.92012 -11.89366 -11.37841 -11.16616 -11.08420 -10.89460 -10.79873 -10.42182 -10.04650 -8.91128 -7.84133 -5.09582 -0.66098 -0.10167 1.51220 1.54049 1.59511 1.73550 2.07477 2.62548 2.72434 3.01618 3.08437 3.35169 3.50144 3.62858 3.80941 3.94684 3.96816 4.30057 4.32271 4.38160 4.47473 4.63896 4.71226 4.78887 4.98275 5.01248 5.13345 5.18239 5.25288 5.30512 5.36499 5.49934 5.62767 5.66996 5.72229 5.84194 6.36130 6.44115 6.87924 7.06116 7.45293 8.17186 8.41854 9.38320 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.005520 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.355772 B = 5071.533486 C = 6569.969120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.167 3.833 5 H 0.060 0.940 6 C 0.119 3.881 7 N -0.701 5.701 8 C 0.567 3.433 9 O -0.570 6.570 10 C -0.247 4.247 11 C 0.206 3.794 12 N -0.532 5.532 13 C 0.313 3.687 14 N -0.536 5.536 15 C 0.189 3.811 16 N -0.721 5.721 17 C -0.209 4.209 18 H 0.080 0.920 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.952 3.048 22 H -0.298 1.298 23 H -0.306 1.306 24 H -0.270 1.270 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.190 0.810 36 H 0.237 0.763 37 H 0.180 0.820 38 H 0.373 0.627 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 -10.422 -3.988 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.078 0.922 6 C -0.005 4.005 7 N -0.351 5.351 8 C 0.353 3.647 9 O -0.451 6.451 10 C -0.254 4.254 11 C 0.039 3.961 12 N -0.246 5.246 13 C 0.027 3.973 14 N -0.250 5.250 15 C 0.022 3.978 16 N -0.361 5.361 17 C -0.341 4.341 18 H 0.098 0.902 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.784 3.216 22 H -0.226 1.226 23 H -0.233 1.233 24 H -0.195 1.195 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.207 0.793 36 H 0.253 0.747 37 H 0.197 0.803 38 H 0.206 0.794 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.661 -11.151 -3.722 13.048 hybrid contribution -0.324 1.752 0.380 1.822 sum 5.336 -9.399 -3.342 11.313 Atomic orbital electron populations 1.21692 0.95966 1.00816 1.00716 1.21577 0.95847 0.96879 0.98253 1.21769 1.00067 0.96527 1.01220 1.20725 0.96959 0.88942 0.87521 0.92167 1.21736 1.00435 0.92616 0.85726 1.45875 1.60027 1.08867 1.20346 1.17926 0.78582 0.82165 0.86005 1.90743 1.44404 1.65604 1.44357 1.21715 1.07725 0.98223 0.97748 1.23686 0.88094 0.90582 0.93700 1.68653 1.13493 1.40158 1.02253 1.26015 0.86793 0.86433 0.98080 1.68575 1.20858 1.11819 1.23713 1.23746 0.86602 1.00784 0.86620 1.42506 1.31398 1.32630 1.29548 1.19452 1.06145 1.03394 1.05149 0.90244 1.25254 0.98788 1.01989 1.00093 1.69786 1.23765 1.43710 1.24395 0.85452 0.78511 0.80770 0.76897 1.22591 1.23325 1.19452 0.94574 0.92790 0.93036 0.90157 0.93169 0.93245 0.93117 0.89765 0.92095 0.75237 0.79310 0.74742 0.80322 0.79432 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 8.74 71.98 0.63 -3.58 16 2 C -0.10 -3.09 2.74 -10.80 -0.03 -3.12 16 3 C -0.14 -4.36 8.46 71.98 0.61 -3.75 16 4 C 0.17 5.39 2.29 44.99 0.10 5.49 16 5 H 0.06 1.92 8.08 -2.39 -0.02 1.90 16 6 C 0.12 3.51 5.10 86.38 0.44 3.95 16 7 N -0.70 -20.66 5.35 -466.00 -2.49 -23.15 16 8 C 0.57 17.14 7.79 86.78 0.68 17.81 16 9 O -0.57 -19.91 16.45 -3.88 -0.06 -19.97 16 10 C -0.25 -6.52 5.91 -19.91 -0.12 -6.63 16 11 C 0.21 5.01 10.88 85.06 0.93 5.93 16 12 N -0.53 -12.26 10.42 -198.98 -2.07 -14.34 16 13 C 0.31 6.51 12.27 180.84 2.22 8.73 16 14 N -0.54 -13.40 10.42 -198.98 -2.07 -15.47 16 15 C 0.19 4.86 10.81 85.06 0.92 5.78 16 16 N -0.72 -29.86 3.53 -322.95 -1.14 -31.00 16 17 C -0.21 -9.87 7.75 84.03 0.65 -9.22 16 18 H 0.08 3.62 7.32 -2.91 -0.02 3.60 16 19 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 20 N -0.97 -54.52 13.06 21.65 0.28 -54.24 16 21 Si 0.95 43.28 29.55 68.60 2.03 45.31 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H 0.04 1.39 7.47 -2.39 -0.02 1.37 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.51 6.46 -2.38 -0.02 1.50 16 28 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.05 1.95 5.99 -2.38 -0.01 1.93 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.06 1.96 6.34 -2.39 -0.02 1.94 16 34 H 0.41 12.07 6.28 -92.71 -0.58 11.49 16 35 H 0.19 4.10 7.75 -2.91 -0.02 4.08 16 36 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.18 4.36 6.54 -2.91 -0.02 4.34 16 38 H 0.37 17.49 7.80 -92.71 -0.72 16.77 16 39 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -60.61 325.43 1.74 -58.87 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.22 Total: 35.70 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 7.49 Total: 18.29 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -7.50 Total: -138.20 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -60.61 1.74 -58.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271830425.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.802 kcal (2) G-P(sol) polarization free energy of solvation -60.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds