Wall clock time and date at job start Tue Mar 31 2020 00:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.46792 * 2 1 4 4 N 1.33317 * 126.10654 * 270.11805 * 3 2 1 5 5 C 1.30866 * 109.68368 * 180.28238 * 4 3 2 6 6 N 1.34493 * 109.16010 * 359.76197 * 5 4 3 7 7 H 0.96998 * 126.46999 * 179.97438 * 6 5 4 8 8 C 1.36666 * 126.10360 * 90.00461 * 3 2 1 9 9 C 1.46757 * 126.84455 * 359.97438 * 8 3 2 10 10 O 1.21675 * 120.00435 * 4.77250 * 9 8 3 11 11 N 1.34779 * 119.99855 * 184.77581 * 9 8 3 12 12 C 1.46501 * 120.00085 * 184.87325 * 11 9 8 13 13 C 1.53009 * 109.47046 * 184.86833 * 12 11 9 14 14 N 1.46499 * 115.54936 * 85.40152 * 13 12 11 15 15 C 1.36938 * 120.00011 * 65.27071 * 14 13 12 16 16 H 1.07998 * 119.99766 * 355.58116 * 15 14 13 17 17 C 1.38808 * 119.99855 * 175.59057 * 15 14 13 18 18 N 1.31620 * 119.99949 * 5.05816 * 17 15 14 19 19 Si 1.86806 * 119.99826 * 185.06509 * 17 15 14 20 20 H 1.48498 * 109.47040 * 354.99332 * 19 17 15 21 21 H 1.48502 * 109.47164 * 114.99615 * 19 17 15 22 22 H 1.48508 * 109.46814 * 234.99482 * 19 17 15 23 23 C 1.52995 * 117.49594 * 231.07276 * 13 12 11 24 24 C 1.53004 * 117.49508 * 299.72935 * 13 12 11 25 25 H 1.09006 * 109.47422 * 299.99803 * 1 2 3 26 26 H 1.09004 * 109.47631 * 59.99771 * 1 2 3 27 27 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47097 * 240.00413 * 2 1 3 29 29 H 1.09000 * 109.47250 * 119.99909 * 2 1 3 30 30 H 1.07994 * 125.41967 * 179.74865 * 5 4 3 31 31 H 0.97001 * 120.00191 * 4.87052 * 11 9 8 32 32 H 1.08992 * 109.47242 * 64.87059 * 12 11 9 33 33 H 1.09001 * 109.47165 * 304.86315 * 12 11 9 34 34 H 0.97000 * 119.99983 * 245.54329 * 14 13 12 35 35 H 0.97007 * 119.99264 * 180.02562 * 18 17 15 36 36 H 1.09002 * 117.49757 * 215.00172 * 23 13 12 37 37 H 1.09006 * 117.50028 * 0.02562 * 23 13 12 38 38 H 1.08996 * 117.49955 * 359.97438 * 24 13 12 39 39 H 1.09001 * 117.49414 * 144.97542 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2920 2.1624 -1.0771 5 6 2.7168 3.3436 -0.7071 6 7 2.7397 3.4036 0.6363 7 1 3.0133 4.1625 1.1749 8 6 2.3007 2.1801 1.1042 9 6 2.1569 1.7745 2.5073 10 8 1.8451 0.6307 2.7811 11 7 2.3702 2.6691 3.4926 12 6 2.3317 2.2397 4.8927 13 6 2.4828 3.4591 5.8045 14 7 1.2434 4.1793 6.1070 15 6 0.2561 3.5680 6.8327 16 1 0.3602 2.5323 7.1209 17 6 -0.8786 4.2793 7.1978 18 7 -1.0522 5.5095 6.7632 19 14 -2.1591 3.4907 8.3059 20 1 -1.7924 2.0735 8.5554 21 1 -2.2146 4.2224 9.5970 22 1 -3.4883 3.5494 7.6462 23 6 3.5475 3.3935 6.9012 24 6 3.7653 4.2834 5.6749 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0035 4.1429 -1.3744 31 1 2.5492 3.5972 3.2747 32 1 3.1474 1.5418 5.0813 33 1 1.3796 1.7496 5.0964 34 1 1.1206 5.0877 5.7900 35 1 -1.8450 6.0067 7.0187 36 1 3.3259 3.8862 7.8479 37 1 4.1407 2.4818 6.9729 38 1 4.5015 3.9567 4.9405 39 1 3.6868 5.3616 5.8144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277239977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:32 Heat of formation + Delta-G solvation = 50.461758 kcal Electronic energy + Delta-G solvation = -21501.845754 eV Core-core repulsion = 18253.282439 eV Total energy + Delta-G solvation = -3248.563315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.28223 -39.20461 -37.53490 -34.58930 -33.57582 -33.05974 -32.02000 -29.79057 -29.25940 -26.67783 -24.01672 -23.82491 -22.73341 -22.02104 -20.97346 -19.84098 -19.17729 -18.45737 -17.18579 -16.25241 -15.76597 -15.63696 -15.24568 -14.70949 -14.38232 -14.30167 -13.91463 -13.75599 -13.46849 -13.28538 -13.15403 -12.29486 -12.24832 -11.98803 -11.39194 -11.08392 -11.03080 -10.98157 -10.92033 -10.43044 -10.36751 -10.25995 -10.10102 -9.80168 -9.77806 -9.39339 -8.98364 -8.84959 -8.47659 -7.14354 -5.90057 -3.20267 1.29888 2.79632 2.80686 3.28209 3.38056 3.44830 3.45079 3.46738 4.30797 4.35893 4.53446 4.80663 4.96190 5.08517 5.15405 5.20365 5.40108 5.52197 5.54147 5.57888 5.64742 5.70887 5.73391 5.94823 6.08514 6.13264 6.29430 6.33026 6.36779 6.45150 6.53833 6.58583 6.65576 6.70680 7.09378 7.61703 7.64954 7.86625 8.27864 8.33342 9.39761 9.91839 10.26723 11.32011 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.004604 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.688839 B = 6080.376674 C = 6721.706132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C 0.095 3.905 4 N -0.499 5.499 5 C 0.213 3.787 6 N -0.554 5.554 7 H 0.423 0.577 8 C -0.083 4.083 9 C 0.589 3.411 10 O -0.526 6.526 11 N -0.711 5.711 12 C 0.146 3.854 13 C 0.128 3.872 14 N -0.689 5.689 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.008 4.008 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C -0.184 4.184 24 C -0.190 4.190 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.214 0.786 31 H 0.393 0.607 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.539 -3.010 -12.088 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.087 4.087 3 C -0.039 4.039 4 N -0.219 5.219 5 C -0.071 4.071 6 N -0.159 5.159 7 H 0.262 0.738 8 C -0.199 4.199 9 C 0.375 3.625 10 O -0.402 6.402 11 N -0.361 5.361 12 C 0.021 3.979 13 C 0.033 3.967 14 N -0.328 5.328 15 C -0.371 4.371 16 H 0.092 0.908 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.225 4.225 24 C -0.227 4.227 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.230 0.770 31 H 0.226 0.774 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.063 -4.216 -12.533 16.617 hybrid contribution -0.423 1.458 1.471 2.114 sum 9.640 -2.758 -11.062 14.930 Atomic orbital electron populations 1.21627 0.94416 1.01725 1.01915 1.20063 0.96225 0.88787 1.03613 1.21029 0.99216 0.97070 0.86612 1.70107 1.18474 1.02757 1.30556 1.25091 1.01922 0.98017 0.82104 1.43349 1.50207 1.13528 1.08805 0.73843 1.21089 1.15315 0.88071 0.95418 1.16827 0.77633 0.85547 0.82481 1.90802 1.47749 1.18922 1.82750 1.45845 1.71950 1.11435 1.06863 1.21355 1.02597 0.95923 0.78004 1.20167 0.84311 0.94244 0.97938 1.41791 1.12418 1.15008 1.63586 1.19214 0.96582 0.95510 1.25775 0.90784 1.24760 0.98581 0.96243 1.00865 1.69675 1.29126 1.10592 1.48475 0.86115 0.81296 0.78493 0.80300 1.20298 1.21720 1.21807 1.23375 1.03743 1.00751 0.94594 1.23090 0.99610 0.98370 1.01673 0.92424 0.92983 0.92238 0.90856 0.88627 0.76975 0.77426 0.92189 0.89704 0.77812 0.93420 0.88487 0.89816 0.89596 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.05 -0.66 5.98 -27.88 -0.17 -0.82 16 3 C 0.09 1.37 6.40 -82.51 -0.53 0.84 16 4 N -0.50 -6.67 11.20 -10.64 -0.12 -6.79 16 5 C 0.21 2.06 13.01 -90.57 -1.18 0.88 16 6 N -0.55 -5.51 6.07 -10.79 -0.07 -5.58 16 7 H 0.42 2.89 8.37 -40.82 -0.34 2.55 16 8 C -0.08 -1.16 7.07 -82.14 -0.58 -1.74 16 9 C 0.59 9.57 7.78 -12.82 -0.10 9.47 16 10 O -0.53 -10.01 14.78 5.21 0.08 -9.93 16 11 N -0.71 -10.78 5.47 -61.59 -0.34 -11.12 16 12 C 0.15 2.55 5.80 -4.04 -0.02 2.52 16 13 C 0.13 2.32 2.23 -131.82 -0.29 2.02 16 14 N -0.69 -16.03 5.50 -47.23 -0.26 -16.29 16 15 C -0.24 -6.38 9.52 -15.06 -0.14 -6.52 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.93 -27.13 13.07 55.49 0.73 -26.41 16 19 Si 0.91 22.06 29.56 -169.99 -5.02 17.04 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.18 -3.01 10.11 -26.70 -0.27 -3.28 16 24 C -0.19 -2.76 9.83 -26.69 -0.26 -3.03 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.40 6.39 -51.93 -0.33 1.06 16 30 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.39 5.08 7.54 -40.82 -0.31 4.77 16 32 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 33 H 0.08 1.77 7.69 -51.93 -0.40 1.37 16 34 H 0.39 9.59 8.04 -40.82 -0.33 9.26 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -32.70 335.25 -8.69 -41.39 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.46 Total: 14.04 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -3.27 Total: -1.42 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -0.06 Total: -66.17 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.70 -8.69 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277239977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.854 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds