Wall clock time and date at job start Tue Mar 31 2020 00:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.46792 * 2 1 4 4 N 1.33317 * 126.10654 * 270.11805 * 3 2 1 5 5 C 1.30866 * 109.68368 * 180.28238 * 4 3 2 6 6 N 1.34493 * 109.16010 * 359.76197 * 5 4 3 7 7 H 0.96998 * 126.46999 * 179.97438 * 6 5 4 8 8 C 1.36666 * 126.10360 * 90.00461 * 3 2 1 9 9 C 1.46757 * 126.84455 * 359.97438 * 8 3 2 10 10 O 1.21675 * 120.00435 * 4.77250 * 9 8 3 11 11 N 1.34779 * 119.99855 * 184.77581 * 9 8 3 12 12 C 1.46501 * 120.00085 * 184.87325 * 11 9 8 13 13 C 1.53009 * 109.47046 * 184.86833 * 12 11 9 14 14 N 1.46499 * 115.54936 * 85.40152 * 13 12 11 15 15 C 1.36938 * 120.00011 * 65.27071 * 14 13 12 16 16 H 1.07998 * 119.99766 * 355.58116 * 15 14 13 17 17 C 1.38808 * 119.99855 * 175.59057 * 15 14 13 18 18 N 1.31620 * 119.99949 * 5.05816 * 17 15 14 19 19 Si 1.86806 * 119.99826 * 185.06509 * 17 15 14 20 20 H 1.48498 * 109.47040 * 354.99332 * 19 17 15 21 21 H 1.48502 * 109.47164 * 114.99615 * 19 17 15 22 22 H 1.48508 * 109.46814 * 234.99482 * 19 17 15 23 23 C 1.52995 * 117.49594 * 231.07276 * 13 12 11 24 24 C 1.53004 * 117.49508 * 299.72935 * 13 12 11 25 25 H 1.09006 * 109.47422 * 299.99803 * 1 2 3 26 26 H 1.09004 * 109.47631 * 59.99771 * 1 2 3 27 27 H 1.08998 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47097 * 240.00413 * 2 1 3 29 29 H 1.09000 * 109.47250 * 119.99909 * 2 1 3 30 30 H 1.07994 * 125.41967 * 179.74865 * 5 4 3 31 31 H 0.97001 * 120.00191 * 4.87052 * 11 9 8 32 32 H 1.08992 * 109.47242 * 64.87059 * 12 11 9 33 33 H 1.09001 * 109.47165 * 304.86315 * 12 11 9 34 34 H 0.97000 * 119.99983 * 245.54329 * 14 13 12 35 35 H 0.97007 * 119.99264 * 180.02562 * 18 17 15 36 36 H 1.09002 * 117.49757 * 215.00172 * 23 13 12 37 37 H 1.09006 * 117.50028 * 0.02562 * 23 13 12 38 38 H 1.08996 * 117.49955 * 359.97438 * 24 13 12 39 39 H 1.09001 * 117.49414 * 144.97542 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2920 2.1624 -1.0771 5 6 2.7168 3.3436 -0.7071 6 7 2.7397 3.4036 0.6363 7 1 3.0133 4.1625 1.1749 8 6 2.3007 2.1801 1.1042 9 6 2.1569 1.7745 2.5073 10 8 1.8451 0.6307 2.7811 11 7 2.3702 2.6691 3.4926 12 6 2.3317 2.2397 4.8927 13 6 2.4828 3.4591 5.8045 14 7 1.2434 4.1793 6.1070 15 6 0.2561 3.5680 6.8327 16 1 0.3602 2.5323 7.1209 17 6 -0.8786 4.2793 7.1978 18 7 -1.0522 5.5095 6.7632 19 14 -2.1591 3.4907 8.3059 20 1 -1.7924 2.0735 8.5554 21 1 -2.2146 4.2224 9.5970 22 1 -3.4883 3.5494 7.6462 23 6 3.5475 3.3935 6.9012 24 6 3.7653 4.2834 5.6749 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0035 4.1429 -1.3744 31 1 2.5492 3.5972 3.2747 32 1 3.1474 1.5418 5.0813 33 1 1.3796 1.7496 5.0964 34 1 1.1206 5.0877 5.7900 35 1 -1.8450 6.0067 7.0187 36 1 3.3259 3.8862 7.8479 37 1 4.1407 2.4818 6.9729 38 1 4.5015 3.9567 4.9405 39 1 3.6868 5.3616 5.8144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277239977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:31 Heat of formation + Delta-G solvation = 27.345779 kcal Electronic energy + Delta-G solvation = -21502.848138 eV Core-core repulsion = 18253.282439 eV Total energy + Delta-G solvation = -3249.565700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.21643 -40.50319 -38.95288 -35.75165 -35.09443 -34.62032 -32.99468 -31.68400 -30.32008 -27.97361 -25.98025 -24.95103 -23.72517 -23.23860 -22.05471 -21.12670 -20.36945 -19.60382 -19.15085 -17.46559 -17.06459 -16.78669 -16.58770 -16.02073 -15.70499 -15.57681 -15.34815 -15.02254 -14.82319 -14.69949 -14.32987 -13.79119 -13.50093 -13.31255 -12.94384 -12.92452 -12.42248 -12.30778 -12.20863 -12.04624 -11.97173 -11.63074 -11.50931 -11.04321 -10.99318 -10.97634 -10.62315 -10.19890 -9.50577 -9.06160 -8.00264 -5.27841 0.27363 1.43518 1.45331 1.54103 1.86585 1.89777 2.13952 2.28052 2.50347 3.05202 3.34208 3.51794 3.62982 3.77983 3.83027 4.08432 4.16906 4.21818 4.27790 4.47971 4.53328 4.67517 4.73275 4.78309 4.80802 4.90304 5.03055 5.05603 5.18186 5.22256 5.28537 5.34911 5.41548 5.53134 5.53529 6.23595 6.34625 6.46911 6.93132 7.10715 7.30039 8.03332 8.25845 9.22540 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.004604 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.688839 B = 6080.376674 C = 6721.706132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 C 0.083 3.917 4 N -0.531 5.531 5 C 0.240 3.760 6 N -0.541 5.541 7 H 0.439 0.561 8 C -0.107 4.107 9 C 0.587 3.413 10 O -0.563 6.563 11 N -0.703 5.703 12 C 0.159 3.841 13 C 0.097 3.903 14 N -0.699 5.699 15 C -0.230 4.230 16 H 0.070 0.930 17 C -0.068 4.068 18 N -0.965 5.965 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.290 1.290 22 H -0.297 1.297 23 C -0.182 4.182 24 C -0.152 4.152 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -2.496 -13.346 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.088 4.088 3 C -0.051 4.051 4 N -0.252 5.252 5 C -0.045 4.045 6 N -0.147 5.147 7 H 0.280 0.720 8 C -0.223 4.223 9 C 0.375 3.625 10 O -0.442 6.442 11 N -0.353 5.353 12 C 0.034 3.966 13 C 0.004 3.996 14 N -0.337 5.337 15 C -0.362 4.362 16 H 0.088 0.912 17 C -0.261 4.261 18 N -0.615 5.615 19 Si 0.792 3.208 20 H -0.194 1.194 21 H -0.217 1.217 22 H -0.225 1.225 23 C -0.223 4.223 24 C -0.190 4.190 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.281 0.719 31 H 0.240 0.760 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.030 -3.694 -13.777 18.660 hybrid contribution -0.913 1.293 1.766 2.371 sum 11.118 -2.401 -12.012 16.542 Atomic orbital electron populations 1.21562 0.94320 1.02419 1.00682 1.20041 0.96284 0.89044 1.03413 1.21211 0.99140 0.97466 0.87307 1.70124 1.20296 1.04279 1.30462 1.26124 0.98315 0.97769 0.82245 1.43272 1.49502 1.12745 1.09180 0.71956 1.20700 1.17661 0.89972 0.94002 1.17135 0.76811 0.85093 0.83485 1.90777 1.49418 1.20488 1.83519 1.45702 1.71693 1.11990 1.05882 1.21053 1.00949 0.95595 0.79038 1.20364 0.83651 0.95624 0.99939 1.41831 1.13782 1.14756 1.63373 1.19454 0.97067 0.95230 1.24418 0.91187 1.25414 1.00722 0.96970 1.02947 1.69791 1.29605 1.11805 1.50330 0.85241 0.78906 0.78068 0.78606 1.19449 1.21711 1.22460 1.23386 1.02644 1.02257 0.93981 1.23185 0.96986 0.98023 1.00785 0.95077 0.92536 0.90665 0.89493 0.90243 0.71922 0.75983 0.90490 0.93963 0.78998 0.94041 0.90361 0.87340 0.85978 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.89 71.98 0.71 -2.77 16 2 C -0.05 -1.34 5.98 29.85 0.18 -1.17 16 3 C 0.08 2.34 6.40 41.97 0.27 2.61 16 4 N -0.53 -13.04 11.20 -187.58 -2.10 -15.14 16 5 C 0.24 3.78 13.01 180.33 2.35 6.12 16 6 N -0.54 -9.25 6.07 -188.05 -1.14 -10.39 16 7 H 0.44 4.51 8.37 -92.71 -0.78 3.73 16 8 C -0.11 -2.89 7.07 40.01 0.28 -2.60 16 9 C 0.59 19.00 7.78 86.47 0.67 19.68 16 10 O -0.56 -22.04 14.78 -4.27 -0.06 -22.10 16 11 N -0.70 -20.65 5.47 -467.00 -2.56 -23.21 16 12 C 0.16 5.47 5.80 86.38 0.50 5.97 16 13 C 0.10 3.39 2.23 3.61 0.01 3.40 16 14 N -0.70 -32.67 5.50 -303.34 -1.67 -34.34 16 15 C -0.23 -12.37 9.52 84.03 0.80 -11.57 16 16 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 17 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 18 N -0.96 -57.32 13.07 21.65 0.28 -57.04 16 19 Si 0.96 46.14 29.56 68.60 2.03 48.16 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 23 C -0.18 -5.57 10.11 30.62 0.31 -5.26 16 24 C -0.15 -3.96 9.83 30.62 0.30 -3.65 16 25 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 2.40 6.39 -2.39 -0.02 2.39 16 30 H 0.27 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.40 9.71 7.54 -92.71 -0.70 9.01 16 32 H 0.08 2.37 7.90 -2.39 -0.02 2.35 16 33 H 0.04 1.81 7.69 -2.39 -0.02 1.79 16 34 H 0.38 18.84 8.04 -92.71 -0.75 18.09 16 35 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 36 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.11 2.78 8.05 -2.38 -0.02 2.76 16 38 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.45 335.25 0.50 -72.94 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: -1.12 Total: 33.73 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 6.85 Total: 7.38 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -7.18 Total: -140.12 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -73.45 0.50 -72.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277239977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.289 kcal (2) G-P(sol) polarization free energy of solvation -73.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds