Wall clock time and date at job start Mon Mar 30 2020 23:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30854 * 125.41278 * 2 1 4 4 C 1.33324 * 109.68296 * 180.02562 * 3 2 1 5 5 C 1.36665 * 107.78382 * 359.97438 * 4 3 2 6 6 C 1.46765 * 126.84098 * 179.97438 * 5 4 3 7 7 O 1.21680 * 120.00278 * 0.02608 * 6 5 4 8 8 N 1.34776 * 119.99778 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99873 * 180.02562 * 8 6 5 10 10 H 1.08993 * 112.85218 * 23.80107 * 9 8 6 11 11 C 1.53784 * 113.61105 * 154.99927 * 9 8 6 12 12 C 1.53772 * 87.08351 * 89.11479 * 11 9 8 13 13 H 1.08999 * 113.61258 * 270.79439 * 12 11 9 14 14 C 1.53000 * 113.61562 * 139.98090 * 12 11 9 15 15 N 1.46505 * 109.46954 * 175.00028 * 14 12 11 16 16 C 1.36938 * 119.99599 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00058 * 0.02562 * 16 15 14 18 18 C 1.38815 * 119.99851 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99702 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00142 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46841 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47568 * 120.00027 * 20 18 16 23 23 H 1.48502 * 109.46833 * 240.00344 * 20 18 16 24 24 C 1.53780 * 87.08327 * 25.42952 * 12 11 9 25 25 N 1.34492 * 125.42067 * 180.02562 * 2 1 3 26 26 H 0.97002 * 126.47366 * 359.97438 * 25 2 1 27 27 H 1.08994 * 109.47218 * 89.97438 * 1 2 3 28 28 H 1.09006 * 109.46571 * 209.97575 * 1 2 3 29 29 H 1.08992 * 109.47128 * 329.97408 * 1 2 3 30 30 H 1.08000 * 126.10696 * 179.73988 * 4 3 2 31 31 H 0.97002 * 120.00041 * 359.97438 * 8 6 5 32 32 H 1.09007 * 113.60891 * 203.66467 * 11 9 8 33 33 H 1.09000 * 113.61639 * 334.47859 * 11 9 8 34 34 H 1.09000 * 109.47015 * 294.99657 * 14 12 11 35 35 H 1.08994 * 109.47439 * 55.00068 * 14 12 11 36 36 H 0.96996 * 120.00255 * 359.97438 * 15 14 12 37 37 H 0.97006 * 119.99730 * 179.97438 * 19 18 16 38 38 H 1.09007 * 113.61532 * 220.02224 * 24 12 11 39 39 H 1.09000 * 113.61317 * 89.11875 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2653 1.0665 0.0000 4 6 3.5486 0.7050 -0.0006 5 6 3.5976 -0.6608 -0.0004 6 6 4.8030 -1.4981 -0.0013 7 8 5.9039 -0.9798 -0.0020 8 7 4.6904 -2.8411 -0.0015 9 6 5.8936 -3.6770 -0.0019 10 1 6.7656 -3.1638 0.4033 11 6 5.6710 -5.0773 0.5935 12 6 5.2890 -5.5335 -0.8244 13 1 4.2283 -5.4206 -1.0485 14 6 5.8291 -6.9178 -1.1893 15 7 5.3156 -7.3113 -2.5038 16 6 5.6671 -8.5204 -3.0420 17 1 6.3224 -9.1840 -2.4974 18 6 5.1803 -8.8936 -4.2873 19 7 4.3812 -8.0851 -4.9508 20 14 5.6591 -10.5433 -5.0213 21 1 6.5607 -11.2594 -4.0834 22 1 4.4377 -11.3558 -5.2520 23 1 6.3602 -10.3259 -6.3122 24 6 6.1573 -4.3764 -1.3458 25 7 2.2865 -1.0960 -0.0005 26 1 1.9851 -2.0180 -0.0006 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5135 29 1 -0.3633 0.8897 0.5142 30 1 4.3978 1.3723 -0.0047 31 1 3.8128 -3.2543 -0.0006 32 1 6.5824 -5.5413 0.9708 33 1 4.8468 -5.1232 1.3053 34 1 6.9182 -6.8865 -1.2191 35 1 5.5067 -7.6423 -0.4415 36 1 4.7268 -6.7155 -2.9928 37 1 4.0413 -8.3457 -5.8211 38 1 5.7247 -3.8567 -2.2008 39 1 7.2016 -4.6487 -1.4988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283023209.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:23 Heat of formation + Delta-G solvation = 21.401484 kcal Electronic energy + Delta-G solvation = -20726.043298 eV Core-core repulsion = 17476.219835 eV Total energy + Delta-G solvation = -3249.823463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.29637 -41.16863 -39.37978 -36.38068 -34.80649 -33.63339 -32.97421 -32.50973 -28.91846 -28.10259 -26.66257 -25.45187 -24.19388 -22.95806 -22.10980 -21.47632 -20.35226 -19.72862 -19.07711 -17.26538 -17.01843 -16.80021 -16.71008 -15.94407 -15.88078 -15.52468 -15.18107 -15.07445 -14.94365 -14.46126 -14.28755 -13.76160 -13.50776 -13.38179 -13.22959 -13.14256 -12.94088 -12.74596 -12.14041 -11.95296 -11.82089 -11.60266 -11.40095 -11.27438 -11.20494 -11.11078 -10.88214 -10.24448 -9.56295 -8.99011 -7.96748 -5.24727 0.16506 1.46356 1.47140 1.57097 1.70261 1.75143 2.01649 2.19905 2.54942 3.36591 3.37077 3.53868 3.56525 3.74522 3.89969 3.91834 4.03922 4.26883 4.31295 4.52255 4.56294 4.73988 4.75275 4.81252 4.83022 4.85082 4.89700 4.96566 5.11665 5.12161 5.22512 5.30206 5.43968 5.48173 5.61113 6.20708 6.26488 6.34988 6.83838 6.98327 7.32560 8.10371 8.32361 9.27015 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022842 B = 0.003132 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.543789 B = 8937.304241 C = 9692.649890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.249 3.751 3 N -0.530 5.530 4 C 0.058 3.942 5 C -0.102 4.102 6 C 0.599 3.401 7 O -0.565 6.565 8 N -0.696 5.696 9 C 0.125 3.875 10 H 0.100 0.900 11 C -0.114 4.114 12 C -0.111 4.111 13 H 0.087 0.913 14 C 0.159 3.841 15 N -0.746 5.746 16 C -0.244 4.244 17 H 0.075 0.925 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.295 1.295 24 C -0.144 4.144 25 N -0.539 5.539 26 H 0.437 0.563 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.183 0.817 31 H 0.409 0.591 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.020 0.980 35 H 0.023 0.977 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.050 0.950 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.506 13.601 14.807 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 N -0.250 5.250 4 C -0.096 4.096 5 C -0.218 4.218 6 C 0.387 3.613 7 O -0.444 6.444 8 N -0.346 5.346 9 C 0.020 3.980 10 H 0.118 0.882 11 C -0.153 4.153 12 C -0.130 4.130 13 H 0.105 0.895 14 C 0.033 3.967 15 N -0.388 5.388 16 C -0.376 4.376 17 H 0.093 0.907 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.219 1.219 23 H -0.222 1.222 24 C -0.182 4.182 25 N -0.145 5.145 26 H 0.279 0.721 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.200 0.800 31 H 0.245 0.755 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.038 0.962 35 H 0.041 0.959 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.869 14.566 14.842 21.900 hybrid contribution 0.014 -2.041 -1.163 2.350 sum -6.855 12.524 13.679 19.773 Atomic orbital electron populations 1.20559 0.81035 1.06189 1.05467 1.24291 0.97442 0.80896 0.98866 1.70227 1.02221 1.29788 1.22805 1.22829 0.95250 0.91812 0.99719 1.20877 0.84328 0.95650 1.20981 1.16985 0.86892 0.81871 0.75560 1.90831 1.27408 1.73924 1.52192 1.45445 1.10103 1.04828 1.74226 1.21841 0.88215 0.91034 0.96910 0.88220 1.23233 1.04014 0.92626 0.95398 1.22698 0.99514 0.93429 0.97360 0.89508 1.20834 0.95786 0.93897 0.86169 1.42590 1.58158 1.19288 1.18764 1.19694 1.22721 0.95216 0.99951 0.90713 1.25559 1.00934 1.02160 0.98266 1.69819 1.38960 1.38428 1.14881 0.85089 0.77234 0.79583 0.77971 1.19033 1.21889 1.22213 1.23437 1.00884 0.96826 0.97084 1.43174 1.04835 1.11204 1.55315 0.72066 0.88247 0.87581 0.88160 0.79999 0.75516 0.87292 0.88820 0.96192 0.95908 0.79557 0.94064 0.93124 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.25 3.98 8.12 138.20 1.12 5.10 16 3 N -0.53 -12.11 11.20 -187.39 -2.10 -14.21 16 4 C 0.06 1.39 11.66 84.10 0.98 2.37 16 5 C -0.10 -2.24 7.08 40.01 0.28 -1.95 16 6 C 0.60 15.09 7.79 86.47 0.67 15.77 16 7 O -0.56 -18.51 16.50 -4.28 -0.07 -18.59 16 8 N -0.70 -14.16 5.26 -443.92 -2.33 -16.49 16 9 C 0.13 2.84 4.33 45.52 0.20 3.04 16 10 H 0.10 2.43 7.46 -2.39 -0.02 2.41 16 11 C -0.11 -2.26 7.39 31.12 0.23 -2.03 16 12 C -0.11 -3.11 3.63 -10.27 -0.04 -3.15 16 13 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 14 C 0.16 5.98 6.10 86.38 0.53 6.51 16 15 N -0.75 -37.20 5.60 -343.44 -1.92 -39.13 16 16 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 17 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 19 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 20 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 C -0.14 -4.06 7.43 31.12 0.23 -3.83 16 25 N -0.54 -7.87 6.07 -176.11 -1.07 -8.94 16 26 H 0.44 3.36 8.32 -92.71 -0.77 2.59 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.18 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.41 6.00 7.94 -92.71 -0.74 5.27 16 32 H 0.11 1.98 8.10 -2.38 -0.02 1.96 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.02 0.77 7.84 -2.39 -0.02 0.75 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.37 19.79 7.67 -92.71 -0.71 19.08 16 37 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 38 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.09 2.57 7.90 -2.39 -0.02 2.55 16 Total: -1.00 -75.82 334.50 -0.05 -75.87 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -1.13 Total: 26.91 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 6.26 Total: 5.43 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -7.14 Total: -137.54 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.07 Total: -18.59 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.82 -0.05 -75.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283023209.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.271 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds