Wall clock time and date at job start Tue Mar 31 2020 00:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46747 * 2 1 4 4 C 1.52992 * 109.47402 * 239.99916 * 2 1 3 5 5 C 1.50699 * 109.47712 * 59.99656 * 4 2 1 6 6 H 1.08002 * 119.99627 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00200 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47379 * 119.99963 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99838 * 9 7 5 13 13 C 1.53000 * 109.46738 * 119.99598 * 2 1 3 14 14 N 1.46498 * 109.47041 * 300.00026 * 13 2 1 15 15 C 1.38510 * 120.00006 * 180.02562 * 14 13 2 16 16 C 1.39895 * 120.51016 * 0.02562 * 15 14 13 17 17 C 1.39043 * 118.19132 * 179.97438 * 16 15 14 18 18 C 1.48435 * 120.51011 * 179.97438 * 17 16 15 19 19 N 1.34781 * 119.99841 * 179.97438 * 18 17 16 20 20 O 1.21480 * 119.99968 * 0.02562 * 18 17 16 21 21 N 1.33346 * 118.98277 * 0.02562 * 17 16 15 22 22 C 1.31537 * 120.93245 * 359.97438 * 21 17 16 23 23 N 1.31864 * 122.00896 * 359.97438 * 22 21 17 24 24 H 1.08993 * 109.47353 * 300.00269 * 1 2 3 25 25 H 1.08999 * 109.46734 * 60.00446 * 1 2 3 26 26 H 1.08998 * 109.46654 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46924 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47140 * 299.99305 * 3 2 1 29 29 H 1.08993 * 109.47414 * 59.99768 * 3 2 1 30 30 H 1.08992 * 109.47261 * 180.02562 * 4 2 1 31 31 H 1.09006 * 109.47046 * 299.99928 * 4 2 1 32 32 H 0.96997 * 120.00236 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46848 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47036 * 60.00341 * 13 2 1 35 35 H 0.96996 * 120.00534 * 0.02562 * 14 13 2 36 36 H 1.08003 * 120.90791 * 359.70358 * 16 15 14 37 37 H 0.96991 * 120.00258 * 0.02562 * 19 18 17 38 38 H 0.97006 * 119.99397 * 179.97438 * 19 18 17 39 39 H 1.07996 * 118.99368 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3807 7 6 1.8705 -0.4824 -3.7319 8 7 2.6259 -1.5522 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 0.4238 1.5654 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4228 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8865 -0.5033 3.7035 16 6 2.6909 -1.6391 3.8444 17 6 2.9978 -2.0713 5.1298 18 6 3.8467 -3.2709 5.3389 19 7 4.1382 -3.6805 6.5895 20 8 4.2795 -3.8829 4.3829 21 7 2.5170 -1.3923 6.1718 22 6 1.7635 -0.3285 5.9962 23 7 1.4498 0.1152 4.7947 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7216 -1.2489 31 1 1.6768 -1.7489 -1.2491 32 1 2.8602 -1.8836 -4.7334 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2493 35 1 0.9936 0.7580 2.3564 36 1 3.0599 -2.1685 2.9783 37 1 3.7930 -3.1916 7.3527 38 1 4.6927 -4.4646 6.7261 39 1 1.3905 0.1976 6.8624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307133960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:03 Heat of formation + Delta-G solvation = -4.554765 kcal Electronic energy + Delta-G solvation = -21157.803595 eV Core-core repulsion = 17906.854585 eV Total energy + Delta-G solvation = -3250.949011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.38 seconds Orbital eigenvalues (eV) -41.15660 -39.25010 -38.01213 -35.21132 -33.91035 -32.93672 -32.33155 -30.58470 -27.16454 -26.58615 -26.44920 -25.40562 -23.83745 -22.50931 -21.14854 -18.86831 -18.45200 -17.65502 -17.00694 -16.38454 -15.74723 -15.53597 -15.34157 -14.91720 -14.68616 -14.57256 -14.31815 -13.97973 -13.87239 -13.13406 -12.85512 -12.66638 -12.12103 -11.52015 -11.08652 -10.99415 -10.92882 -10.85961 -10.70241 -10.65317 -10.47776 -10.30357 -10.08952 -9.93086 -9.86653 -9.40203 -9.30279 -8.99908 -8.41074 -8.11470 -6.04885 -4.06438 0.53201 1.17704 2.68938 2.94972 3.18287 3.27534 3.36041 3.38320 3.87903 3.97041 4.39555 4.41375 4.67807 4.95472 5.26359 5.30539 5.39914 5.44088 5.50075 5.66594 5.94181 6.04725 6.09798 6.15549 6.26879 6.45560 6.53581 6.55949 6.65385 6.93895 6.98865 6.99133 7.04567 7.22225 7.54402 7.56802 7.67136 7.93076 7.96690 8.14143 8.34460 8.98222 9.57307 11.06534 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.003571 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.557132 B = 7840.032468 C = 8670.231480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.124 3.876 14 N -0.690 5.690 15 C 0.442 3.558 16 C -0.226 4.226 17 C 0.147 3.853 18 C 0.578 3.422 19 N -0.834 5.834 20 O -0.525 6.525 21 N -0.555 5.555 22 C 0.337 3.663 23 N -0.574 5.574 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.410 0.590 36 H 0.156 0.844 37 H 0.412 0.588 38 H 0.405 0.595 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 0.844 20.275 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.070 4.070 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.001 3.999 14 N -0.321 5.321 15 C 0.194 3.806 16 C -0.256 4.256 17 C 0.005 3.995 18 C 0.360 3.640 19 N -0.398 5.398 20 O -0.399 6.399 21 N -0.278 5.278 22 C 0.047 3.953 23 N -0.300 5.300 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.248 0.752 36 H 0.174 0.826 37 H 0.243 0.757 38 H 0.236 0.764 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.546 0.776 19.966 19.989 hybrid contribution -0.166 0.234 -1.217 1.250 sum -0.712 1.009 18.749 18.790 Atomic orbital electron populations 1.21776 0.95011 1.01281 1.00520 1.20898 0.95708 0.95981 0.94456 1.21774 1.00567 0.95727 1.00520 1.19105 0.96414 0.95251 0.89379 1.21191 1.31301 1.12128 0.90434 0.92162 1.25005 0.95258 0.95054 0.99123 1.69964 1.36905 1.22967 1.23442 0.86588 0.78631 0.79693 0.83394 1.19784 1.21093 1.21098 1.21940 0.98985 0.96240 0.82759 1.45006 1.53630 1.32038 1.01399 1.18622 0.87244 0.87850 0.86841 1.22259 1.04164 0.99601 0.99611 1.21025 0.94625 0.94245 0.89615 1.17877 0.79536 0.83002 0.83586 1.43596 1.54870 1.33324 1.08010 1.90871 1.52339 1.55684 1.41037 1.68242 1.15271 1.10400 1.33868 1.24519 0.88759 0.88658 0.93361 1.67911 1.28662 1.34718 0.98708 0.95086 0.91218 0.93283 0.93283 0.91219 0.95086 0.96231 0.96230 0.93025 0.91388 0.91390 0.75165 0.82620 0.75745 0.76377 0.78567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.26 0.54 -154.51 -0.08 -1.34 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.85 4.04 -27.89 -0.11 0.73 16 5 C -0.51 -13.28 7.65 -34.44 -0.26 -13.54 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 9 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.12 1.95 3.82 -4.04 -0.02 1.93 16 14 N -0.69 -9.66 5.11 -60.25 -0.31 -9.96 16 15 C 0.44 6.23 7.71 -154.86 -1.19 5.04 16 16 C -0.23 -3.23 8.94 -38.66 -0.35 -3.57 16 17 C 0.15 1.93 6.79 -82.71 -0.56 1.37 16 18 C 0.58 7.35 8.10 -12.06 -0.10 7.25 16 19 N -0.83 -6.83 8.87 30.67 0.27 -6.56 16 20 O -0.53 -8.55 17.25 5.38 0.09 -8.46 16 21 N -0.55 -6.33 9.70 -11.22 -0.11 -6.44 16 22 C 0.34 3.67 12.27 -92.31 -1.13 2.53 16 23 N -0.57 -7.53 10.45 -13.82 -0.14 -7.68 16 24 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 25 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.07 1.08 7.98 -51.93 -0.41 0.67 16 34 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 35 H 0.41 5.50 6.29 -40.82 -0.26 5.25 16 36 H 0.16 2.31 6.55 -52.48 -0.34 1.97 16 37 H 0.41 2.65 8.21 -40.82 -0.34 2.32 16 38 H 0.41 2.53 8.93 -40.82 -0.36 2.17 16 39 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -30.86 324.43 -7.97 -38.83 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.07 Total: 6.57 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.31 Total: -1.92 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.45 Total: -55.83 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.86 -7.97 -38.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307133960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.280 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds