Wall clock time and date at job start Tue Mar 31 2020 00:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46747 * 2 1 4 4 C 1.52992 * 109.47402 * 239.99916 * 2 1 3 5 5 C 1.50699 * 109.47712 * 59.99656 * 4 2 1 6 6 H 1.08002 * 119.99627 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00200 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00087 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47064 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47379 * 119.99963 * 9 7 5 12 12 H 1.48502 * 109.47083 * 239.99838 * 9 7 5 13 13 C 1.53000 * 109.46738 * 119.99598 * 2 1 3 14 14 N 1.46498 * 109.47041 * 300.00026 * 13 2 1 15 15 C 1.38510 * 120.00006 * 180.02562 * 14 13 2 16 16 C 1.39895 * 120.51016 * 0.02562 * 15 14 13 17 17 C 1.39043 * 118.19132 * 179.97438 * 16 15 14 18 18 C 1.48435 * 120.51011 * 179.97438 * 17 16 15 19 19 N 1.34781 * 119.99841 * 179.97438 * 18 17 16 20 20 O 1.21480 * 119.99968 * 0.02562 * 18 17 16 21 21 N 1.33346 * 118.98277 * 0.02562 * 17 16 15 22 22 C 1.31537 * 120.93245 * 359.97438 * 21 17 16 23 23 N 1.31864 * 122.00896 * 359.97438 * 22 21 17 24 24 H 1.08993 * 109.47353 * 300.00269 * 1 2 3 25 25 H 1.08999 * 109.46734 * 60.00446 * 1 2 3 26 26 H 1.08998 * 109.46654 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46924 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47140 * 299.99305 * 3 2 1 29 29 H 1.08993 * 109.47414 * 59.99768 * 3 2 1 30 30 H 1.08992 * 109.47261 * 180.02562 * 4 2 1 31 31 H 1.09006 * 109.47046 * 299.99928 * 4 2 1 32 32 H 0.96997 * 120.00236 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46848 * 180.02562 * 13 2 1 34 34 H 1.08992 * 109.47036 * 60.00341 * 13 2 1 35 35 H 0.96996 * 120.00534 * 0.02562 * 14 13 2 36 36 H 1.08003 * 120.90791 * 359.70358 * 16 15 14 37 37 H 0.96991 * 120.00258 * 0.02562 * 19 18 17 38 38 H 0.97006 * 119.99397 * 179.97438 * 19 18 17 39 39 H 1.07996 * 118.99368 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 1 0.9172 0.8673 -2.3807 7 6 1.8705 -0.4824 -3.7319 8 7 2.6259 -1.5522 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 0.4238 1.5654 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4228 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8865 -0.5033 3.7035 16 6 2.6909 -1.6391 3.8444 17 6 2.9978 -2.0713 5.1298 18 6 3.8467 -3.2709 5.3389 19 7 4.1382 -3.6805 6.5895 20 8 4.2795 -3.8829 4.3829 21 7 2.5170 -1.3923 6.1718 22 6 1.7635 -0.3285 5.9962 23 7 1.4498 0.1152 4.7947 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7216 -1.2489 31 1 1.6768 -1.7489 -1.2491 32 1 2.8602 -1.8836 -4.7334 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2493 35 1 0.9936 0.7580 2.3564 36 1 3.0599 -2.1685 2.9783 37 1 3.7930 -3.1916 7.3527 38 1 4.6927 -4.4646 6.7261 39 1 1.3905 0.1976 6.8624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307133960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:55 Heat of formation + Delta-G solvation = -26.214738 kcal Electronic energy + Delta-G solvation = -21158.742842 eV Core-core repulsion = 17906.854585 eV Total energy + Delta-G solvation = -3251.888258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.32 seconds Orbital eigenvalues (eV) -42.15901 -40.29088 -39.37090 -36.49664 -34.95937 -34.37103 -33.74438 -31.73072 -29.03472 -27.99488 -27.74048 -26.42415 -25.30907 -23.95386 -22.16663 -20.13253 -19.49266 -18.85314 -18.35424 -17.94929 -16.85233 -16.58185 -16.48085 -16.38299 -15.89749 -15.88792 -15.54272 -15.18259 -14.87498 -14.65493 -14.37524 -14.12695 -13.95740 -13.01789 -12.74419 -12.70832 -12.36064 -12.27660 -12.19323 -12.01113 -11.83338 -11.71824 -11.53518 -11.06361 -11.03574 -10.87611 -10.77083 -10.51959 -10.38909 -9.21885 -8.14611 -6.21685 -0.49124 0.17795 1.40858 1.42707 1.53620 1.69182 1.87539 2.21240 2.44180 2.89174 3.11495 3.20441 3.48237 3.64519 3.87533 3.99787 4.03066 4.19171 4.38569 4.52237 4.65205 4.66291 4.66778 4.93033 5.06356 5.10098 5.20034 5.41294 5.48782 5.50063 5.52570 5.55747 5.75052 5.77908 5.89479 6.01009 6.29135 6.32657 6.50393 6.93453 7.10587 7.18746 7.46097 8.97818 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027269 B = 0.003571 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.557132 B = 7840.032468 C = 8670.231480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.070 0.930 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.140 3.860 14 N -0.686 5.686 15 C 0.437 3.563 16 C -0.248 4.248 17 C 0.147 3.853 18 C 0.574 3.426 19 N -0.806 5.806 20 O -0.570 6.570 21 N -0.543 5.543 22 C 0.340 3.660 23 N -0.579 5.579 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.054 0.946 29 H 0.063 0.937 30 H -0.009 1.009 31 H -0.009 1.009 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.415 0.585 36 H 0.140 0.860 37 H 0.424 0.576 38 H 0.417 0.583 39 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.723 2.442 22.591 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.088 0.912 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.016 3.984 14 N -0.318 5.318 15 C 0.190 3.810 16 C -0.278 4.278 17 C 0.004 3.996 18 C 0.356 3.644 19 N -0.370 5.370 20 O -0.448 6.448 21 N -0.265 5.265 22 C 0.051 3.949 23 N -0.305 5.305 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.158 0.842 37 H 0.257 0.743 38 H 0.251 0.749 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.691 2.397 22.366 22.557 hybrid contribution 0.201 -0.287 -1.758 1.793 sum -1.489 2.110 20.607 20.768 Atomic orbital electron populations 1.21696 0.93822 1.01080 1.01366 1.20687 0.96549 0.96237 0.92896 1.21694 1.00082 0.94821 1.01366 1.18966 0.94551 0.94307 0.91887 1.21612 1.30362 1.12019 0.91175 0.91188 1.25886 0.95694 0.95846 1.02550 1.70107 1.38767 1.24845 1.24025 0.85544 0.78057 0.78835 0.79500 1.18264 1.21065 1.21077 1.21541 0.98466 0.95720 0.82719 1.44685 1.54066 1.32145 1.00892 1.18635 0.87400 0.87899 0.87090 1.22224 1.05437 1.00328 0.99855 1.21147 0.94426 0.94420 0.89639 1.17937 0.79402 0.82801 0.84254 1.43416 1.53558 1.33185 1.06860 1.90856 1.54253 1.57041 1.42610 1.68346 1.15001 1.10375 1.32759 1.25469 0.87479 0.88118 0.93871 1.67990 1.28765 1.34751 0.98970 0.91797 0.92681 0.94054 0.94054 0.92681 0.91798 0.99066 0.99068 0.93170 0.92079 0.92077 0.74575 0.84194 0.74314 0.74947 0.74217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.28 0.54 -52.18 -0.03 -2.31 16 3 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.06 7.65 25.60 0.20 -26.86 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -56.11 13.29 21.44 0.28 -55.83 16 9 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.14 4.44 3.82 86.38 0.33 4.77 16 14 N -0.69 -18.35 5.11 -344.53 -1.76 -20.11 16 15 C 0.44 11.76 7.71 133.29 1.03 12.79 16 16 C -0.25 -7.06 8.94 22.86 0.20 -6.85 16 17 C 0.15 3.70 6.79 41.83 0.28 3.98 16 18 C 0.57 14.22 8.10 86.96 0.70 14.92 16 19 N -0.81 -11.70 8.87 -175.19 -1.55 -13.25 16 20 O -0.57 -18.91 17.25 -3.65 -0.06 -18.97 16 21 N -0.54 -10.92 9.70 -189.42 -1.84 -12.76 16 22 C 0.34 6.21 12.27 180.94 2.22 8.43 16 23 N -0.58 -13.64 10.45 -197.64 -2.07 -15.71 16 24 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 25 H 0.05 1.98 6.62 -2.39 -0.02 1.96 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.98 6.62 -2.39 -0.02 1.96 16 29 H 0.06 1.69 6.86 -2.39 -0.02 1.67 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.06 2.02 7.98 -2.39 -0.02 2.00 16 34 H 0.06 2.02 7.97 -2.39 -0.02 2.00 16 35 H 0.42 10.12 6.29 -92.71 -0.58 9.54 16 36 H 0.14 4.39 6.55 -2.91 -0.02 4.37 16 37 H 0.42 4.30 8.21 -92.71 -0.76 3.54 16 38 H 0.42 4.44 8.93 -92.70 -0.83 3.61 16 39 H 0.24 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -68.50 324.43 0.65 -67.85 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -1.06 Total: 19.07 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.68 Total: 4.33 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -6.93 Total: -117.65 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.06 Total: -18.97 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.50 0.65 -67.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307133960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.637 kcal (2) G-P(sol) polarization free energy of solvation -68.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.32 seconds