Wall clock time and date at job start Tue Mar 31 2020 00:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 C 1.53499 * 114.20415 * 174.99665 * 3 2 1 5 5 N 1.47069 * 87.97917 * 139.85546 * 4 3 2 6 6 C 1.34784 * 136.05474 * 152.84449 * 5 4 3 7 7 O 1.21592 * 119.99625 * 359.72469 * 6 5 4 8 8 N 1.34771 * 119.99547 * 179.97438 * 6 5 4 9 9 C 1.40205 * 119.99694 * 180.02562 * 8 6 5 10 10 C 1.40399 * 125.96992 * 0.02562 * 9 8 6 11 11 C 1.35248 * 107.86589 * 179.97438 * 10 9 8 12 12 N 1.34962 * 107.85534 * 359.97438 * 11 10 9 13 13 C 1.46510 * 125.97251 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46972 * 125.00087 * 13 12 11 15 15 H 1.08007 * 120.00237 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00076 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47409 * 59.99685 * 18 16 14 20 20 H 1.48502 * 109.47494 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47045 * 299.99833 * 18 16 14 22 22 N 1.31204 * 125.97136 * 179.69376 * 9 8 6 23 23 C 1.47068 * 87.88651 * 333.10076 * 5 4 3 24 24 H 1.08997 * 109.47540 * 299.99923 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.00321 * 1 2 3 26 26 H 1.09006 * 109.47389 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47238 * 239.99621 * 2 1 3 28 28 H 1.09007 * 109.47037 * 120.00446 * 2 1 3 29 29 H 1.09001 * 113.27900 * 41.93403 * 3 2 1 30 30 H 1.08996 * 113.46891 * 25.07919 * 4 3 2 31 31 H 1.08999 * 113.51999 * 254.64148 * 4 3 2 32 32 H 0.96999 * 120.00409 * 0.02562 * 8 6 5 33 33 H 1.07999 * 126.06766 * 359.97438 * 10 9 8 34 34 H 1.07993 * 126.06899 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.46596 * 245.00025 * 13 12 11 36 36 H 1.08999 * 109.46851 * 4.99732 * 13 12 11 37 37 H 0.96994 * 120.00284 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.46792 * 141.68140 * 23 5 4 39 39 H 1.09003 * 113.46300 * 272.12041 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.5709 0.1221 5 7 3.5001 2.6581 -0.8662 6 6 4.2343 3.7505 -1.1565 7 8 5.2243 4.0097 -0.5000 8 7 3.8680 4.5582 -2.1714 9 6 4.6320 5.6943 -2.4738 10 6 5.7956 6.1074 -1.8055 11 6 6.2322 7.2431 -2.3961 12 7 5.3812 7.5408 -3.4004 13 6 5.4818 8.6921 -4.3009 14 6 5.4867 8.2133 -5.7298 15 1 5.4210 7.1570 -5.9456 16 6 5.5740 9.1235 -6.7616 17 7 5.6536 10.4098 -6.4988 18 14 5.5794 8.5302 -8.5328 19 1 4.3215 7.7918 -8.8113 20 1 5.6803 9.6972 -9.4456 21 1 6.7402 7.6297 -8.7496 22 7 4.3879 6.5538 -3.4346 23 6 2.2783 2.0323 -1.3940 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.4813 2.0969 0.6691 30 1 4.1041 0.6929 -0.2332 31 1 3.8961 1.8989 1.1073 32 1 3.0760 4.3536 -2.6925 33 1 6.2596 5.6072 -0.9684 34 1 7.1069 7.8104 -2.1146 35 1 4.6297 9.3531 -4.1421 36 1 6.4051 9.2339 -4.0960 37 1 5.7146 11.0503 -7.2246 38 1 1.5172 2.7522 -1.6951 39 1 2.4717 1.2785 -2.1572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310329846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:36 Heat of formation + Delta-G solvation = 89.244643 kcal Electronic energy + Delta-G solvation = -20740.290238 eV Core-core repulsion = 17493.408675 eV Total energy + Delta-G solvation = -3246.881563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -40.92651 -40.19999 -38.33292 -34.62640 -33.75050 -33.26055 -31.00615 -29.30533 -28.85274 -26.54817 -26.28949 -24.15054 -22.87499 -21.44502 -20.61124 -20.02532 -19.20998 -17.79349 -16.66314 -16.52672 -16.19844 -15.78286 -15.12003 -14.79393 -14.57643 -14.30026 -14.03855 -13.73522 -13.36565 -12.85984 -12.78065 -12.58440 -12.30906 -12.18115 -12.07810 -11.74894 -11.44343 -11.30023 -11.03913 -10.84568 -10.67212 -10.41215 -10.23546 -10.02658 -9.64720 -9.47880 -8.89285 -8.60871 -8.06883 -7.37992 -6.22261 -4.27311 2.19596 2.68677 3.13519 3.26741 3.29788 3.33713 3.42178 3.85537 3.88264 4.14287 4.34821 4.44715 4.62338 4.77117 4.94495 5.08240 5.11883 5.12669 5.20562 5.26639 5.34915 5.44879 5.59184 5.61073 5.68278 5.79129 5.85447 5.97376 6.33282 6.56881 6.72772 6.86762 7.06534 7.22253 7.53617 7.71959 7.85952 8.00228 8.09679 8.62241 8.69392 8.82898 9.38087 10.86405 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.003130 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.694891 B = 8943.273583 C = 9652.988732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.132 3.868 5 N -0.667 5.667 6 C 0.744 3.256 7 O -0.565 6.565 8 N -0.640 5.640 9 C 0.276 3.724 10 C -0.287 4.287 11 C 0.052 3.948 12 N -0.321 5.321 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.308 5.308 23 C 0.100 3.900 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.406 0.594 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 -18.787 12.694 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.144 4.144 4 C 0.009 3.991 5 N -0.407 5.407 6 C 0.447 3.553 7 O -0.440 6.440 8 N -0.290 5.290 9 C 0.022 3.978 10 C -0.318 4.318 11 C -0.098 4.098 12 N -0.103 5.103 13 C 0.142 3.858 14 C -0.567 4.567 15 H 0.086 0.914 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.201 1.201 22 N -0.139 5.139 23 C -0.023 4.023 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.240 0.760 33 H 0.177 0.823 34 H 0.185 0.815 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.196 -17.763 11.990 22.945 hybrid contribution 0.163 -0.447 -0.776 0.911 sum -8.033 -18.210 11.213 22.845 Atomic orbital electron populations 1.21764 0.95345 1.01771 1.02122 1.21417 0.96318 0.94550 1.02688 1.23034 0.96003 0.97753 0.97600 1.22881 0.95113 0.88013 0.93127 1.48525 1.29571 1.24130 1.38517 1.14899 0.81555 0.78578 0.80316 1.90869 1.26703 1.73501 1.52943 1.41291 1.29810 1.23847 1.34024 1.18784 0.93462 0.89177 0.96372 1.21507 1.00532 1.00934 1.08832 1.22548 0.97375 0.98094 0.91816 1.49062 1.17176 1.19849 1.24194 1.19730 0.98952 0.79461 0.87700 1.21226 1.51710 0.94328 0.89405 0.91373 1.24945 0.94644 0.94667 0.99836 1.69912 1.49515 1.00846 1.33149 0.86383 0.78903 0.78129 0.83050 1.19959 1.21046 1.20051 1.77321 1.14453 1.01342 1.20758 1.23090 0.86154 0.96209 0.96859 0.92585 0.92498 0.92642 0.91347 0.91154 0.87654 0.89941 0.90274 0.75986 0.82255 0.81472 0.93758 0.92529 0.92288 0.90531 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.11 -0.48 5.85 -26.73 -0.16 -0.64 16 3 C -0.12 -0.75 3.98 -90.24 -0.36 -1.11 16 4 C 0.13 1.11 8.20 -8.50 -0.07 1.04 16 5 N -0.67 -7.86 3.69 -191.17 -0.71 -8.56 16 6 C 0.74 12.33 8.76 -86.92 -0.76 11.57 16 7 O -0.56 -11.23 14.25 5.28 0.08 -11.16 16 8 N -0.64 -10.99 5.46 -15.50 -0.08 -11.07 16 9 C 0.28 5.87 8.11 -154.36 -1.25 4.62 16 10 C -0.29 -6.02 9.61 -39.83 -0.38 -6.40 16 11 C 0.05 1.07 11.44 -17.24 -0.20 0.88 16 12 N -0.32 -7.69 3.67 -62.56 -0.23 -7.92 16 13 C 0.26 6.71 6.26 -5.19 -0.03 6.68 16 14 C -0.53 -14.92 9.23 -34.44 -0.32 -15.24 16 15 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 18 Si 0.91 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 N -0.31 -7.34 12.42 31.44 0.39 -6.95 16 23 C 0.10 0.76 7.86 -8.64 -0.07 0.69 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 0.28 7.83 -51.93 -0.41 -0.13 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.11 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 5.85 8.54 -40.82 -0.35 5.50 16 33 H 0.16 3.31 5.91 -52.49 -0.31 3.00 16 34 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 35 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.43 8.07 -51.93 -0.42 1.02 16 37 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.54 7.89 -51.93 -0.41 0.13 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -33.82 333.91 -8.80 -42.62 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.66 Total: 2.91 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -3.33 Total: 3.42 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.11 Total: -59.36 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.82 -8.80 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310329846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.863 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds