Wall clock time and date at job start Tue Mar 31 2020 00:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47291 * 2 1 4 4 C 1.53499 * 114.20415 * 174.99665 * 3 2 1 5 5 N 1.47069 * 87.97917 * 139.85546 * 4 3 2 6 6 C 1.34784 * 136.05474 * 152.84449 * 5 4 3 7 7 O 1.21592 * 119.99625 * 359.72469 * 6 5 4 8 8 N 1.34771 * 119.99547 * 179.97438 * 6 5 4 9 9 C 1.40205 * 119.99694 * 180.02562 * 8 6 5 10 10 C 1.40399 * 125.96992 * 0.02562 * 9 8 6 11 11 C 1.35248 * 107.86589 * 179.97438 * 10 9 8 12 12 N 1.34962 * 107.85534 * 359.97438 * 11 10 9 13 13 C 1.46510 * 125.97251 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.46972 * 125.00087 * 13 12 11 15 15 H 1.08007 * 120.00237 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00076 * 179.97438 * 14 13 12 17 17 N 1.31524 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00424 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47409 * 59.99685 * 18 16 14 20 20 H 1.48502 * 109.47494 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47045 * 299.99833 * 18 16 14 22 22 N 1.31204 * 125.97136 * 179.69376 * 9 8 6 23 23 C 1.47068 * 87.88651 * 333.10076 * 5 4 3 24 24 H 1.08997 * 109.47540 * 299.99923 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.00321 * 1 2 3 26 26 H 1.09006 * 109.47389 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47238 * 239.99621 * 2 1 3 28 28 H 1.09007 * 109.47037 * 120.00446 * 2 1 3 29 29 H 1.09001 * 113.27900 * 41.93403 * 3 2 1 30 30 H 1.08996 * 113.46891 * 25.07919 * 4 3 2 31 31 H 1.08999 * 113.51999 * 254.64148 * 4 3 2 32 32 H 0.96999 * 120.00409 * 0.02562 * 8 6 5 33 33 H 1.07999 * 126.06766 * 359.97438 * 10 9 8 34 34 H 1.07993 * 126.06899 * 180.02562 * 11 10 9 35 35 H 1.09004 * 109.46596 * 245.00025 * 13 12 11 36 36 H 1.08999 * 109.46851 * 4.99732 * 13 12 11 37 37 H 0.96994 * 120.00284 * 180.02562 * 17 16 14 38 38 H 1.09000 * 113.46792 * 141.68140 * 23 5 4 39 39 H 1.09003 * 113.46300 * 272.12041 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.5709 0.1221 5 7 3.5001 2.6581 -0.8662 6 6 4.2343 3.7505 -1.1565 7 8 5.2243 4.0097 -0.5000 8 7 3.8680 4.5582 -2.1714 9 6 4.6320 5.6943 -2.4738 10 6 5.7956 6.1074 -1.8055 11 6 6.2322 7.2431 -2.3961 12 7 5.3812 7.5408 -3.4004 13 6 5.4818 8.6921 -4.3009 14 6 5.4867 8.2133 -5.7298 15 1 5.4210 7.1570 -5.9456 16 6 5.5740 9.1235 -6.7616 17 7 5.6536 10.4098 -6.4988 18 14 5.5794 8.5302 -8.5328 19 1 4.3215 7.7918 -8.8113 20 1 5.6803 9.6972 -9.4456 21 1 6.7402 7.6297 -8.7496 22 7 4.3879 6.5538 -3.4346 23 6 2.2783 2.0323 -1.3940 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.4813 2.0969 0.6691 30 1 4.1041 0.6929 -0.2332 31 1 3.8961 1.8989 1.1073 32 1 3.0760 4.3536 -2.6925 33 1 6.2596 5.6072 -0.9684 34 1 7.1069 7.8104 -2.1146 35 1 4.6297 9.3531 -4.1421 36 1 6.4051 9.2339 -4.0960 37 1 5.7146 11.0503 -7.2246 38 1 1.5172 2.7522 -1.6951 39 1 2.4717 1.2785 -2.1572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310329846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:35 Heat of formation + Delta-G solvation = 67.895268 kcal Electronic energy + Delta-G solvation = -20741.216017 eV Core-core repulsion = 17493.408675 eV Total energy + Delta-G solvation = -3247.807342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28807 -41.43441 -39.48797 -36.20869 -35.28110 -34.26035 -32.78145 -30.98360 -29.86776 -28.35733 -26.99075 -25.24484 -24.39531 -22.70398 -21.82341 -21.27285 -20.40514 -18.89175 -18.69170 -18.16109 -17.25385 -17.06724 -16.55778 -16.06391 -15.95561 -15.48487 -15.17251 -14.83434 -14.46924 -14.23319 -14.07253 -13.82475 -13.69204 -13.43885 -13.07432 -12.94997 -12.73061 -12.59311 -12.29070 -12.10146 -11.90437 -11.81198 -11.61269 -11.41519 -11.21033 -11.03582 -10.72296 -9.92845 -9.70761 -9.06237 -8.33041 -6.47436 0.97467 1.05142 1.37974 1.40143 1.48940 1.65789 1.96734 2.34473 2.36169 2.82342 2.98476 3.32092 3.87690 3.96672 4.05059 4.22457 4.34281 4.36755 4.55697 4.58339 4.59965 4.71460 4.76590 4.82893 4.91894 4.92648 4.98978 5.02235 5.21452 5.24590 5.30975 5.41561 5.56021 5.58779 5.78367 5.90224 6.02890 6.27565 6.62728 6.72446 7.07654 7.22376 7.36455 8.74397 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.003130 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.694891 B = 8943.273583 C = 9652.988732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.103 4.103 4 C 0.124 3.876 5 N -0.670 5.670 6 C 0.737 3.263 7 O -0.605 6.605 8 N -0.635 5.635 9 C 0.283 3.717 10 C -0.294 4.294 11 C 0.059 3.941 12 N -0.344 5.344 13 C 0.273 3.727 14 C -0.549 4.549 15 H 0.052 0.948 16 C 0.018 3.982 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.272 1.272 21 H -0.270 1.270 22 N -0.347 5.347 23 C 0.096 3.904 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.417 0.583 33 H 0.164 0.836 34 H 0.203 0.797 35 H 0.022 0.978 36 H 0.060 0.940 37 H 0.273 0.727 38 H 0.084 0.916 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -20.698 12.562 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.123 4.123 4 C 0.002 3.998 5 N -0.408 5.408 6 C 0.439 3.561 7 O -0.484 6.484 8 N -0.286 5.286 9 C 0.028 3.972 10 C -0.326 4.326 11 C -0.089 4.089 12 N -0.126 5.126 13 C 0.154 3.846 14 C -0.587 4.587 15 H 0.070 0.930 16 C -0.182 4.182 17 N -0.559 5.559 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.195 1.195 22 N -0.178 5.178 23 C -0.026 4.026 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.254 0.746 33 H 0.181 0.819 34 H 0.220 0.780 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.838 -19.738 11.882 24.675 hybrid contribution 0.293 0.024 -0.609 0.676 sum -8.545 -19.714 11.273 24.264 Atomic orbital electron populations 1.21771 0.95196 1.02119 1.02015 1.21392 0.96292 0.93042 1.03586 1.22913 0.94108 0.98966 0.96273 1.23237 0.97165 0.87262 0.92174 1.48717 1.29882 1.23115 1.39129 1.15120 0.81624 0.79539 0.79778 1.90821 1.28628 1.74817 1.54118 1.41304 1.29854 1.22883 1.34543 1.19089 0.93543 0.89431 0.95153 1.21662 1.00715 1.01151 1.09049 1.23155 0.97526 0.98004 0.90243 1.48852 1.18484 1.20068 1.25227 1.19353 0.97955 0.79939 0.87338 1.21370 1.52624 0.93703 0.91013 0.93000 1.25748 0.93865 0.94738 1.03852 1.69990 1.49592 1.01735 1.34597 0.85395 0.78900 0.78017 0.78091 1.19803 1.19705 1.19504 1.77241 1.15546 1.02412 1.22577 1.23443 0.84372 0.96469 0.98311 0.92724 0.92642 0.92102 0.90512 0.90245 0.87672 0.88156 0.90968 0.74618 0.81867 0.77980 0.96015 0.92245 0.91799 0.89778 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.90 71.98 0.71 -0.21 16 2 C -0.11 -0.59 5.85 30.59 0.18 -0.41 16 3 C -0.10 -0.99 3.98 -10.55 -0.04 -1.03 16 4 C 0.12 1.85 8.20 83.18 0.68 2.53 16 5 N -0.67 -14.84 3.69 -876.98 -3.24 -18.07 16 6 C 0.74 24.10 8.76 179.05 1.57 25.67 16 7 O -0.61 -24.14 14.25 -4.00 -0.06 -24.20 16 8 N -0.63 -21.65 5.46 -321.23 -1.75 -23.40 16 9 C 0.28 12.15 8.11 133.31 1.08 13.23 16 10 C -0.29 -12.38 9.61 22.11 0.21 -12.17 16 11 C 0.06 2.45 11.44 83.52 0.96 3.41 16 12 N -0.34 -16.77 3.67 -351.83 -1.29 -18.06 16 13 C 0.27 14.46 6.26 85.63 0.54 14.99 16 14 C -0.55 -31.48 9.23 25.60 0.24 -31.25 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 16 C 0.02 1.03 5.46 84.65 0.46 1.49 16 17 N -0.92 -52.66 13.29 21.45 0.28 -52.38 16 18 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 N -0.35 -16.84 12.42 -54.43 -0.68 -17.52 16 23 C 0.10 1.22 7.86 83.09 0.65 1.87 16 24 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.05 0.35 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 27 H 0.08 0.35 7.83 -2.39 -0.02 0.33 16 28 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.11 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.10 1.18 8.10 -2.39 -0.02 1.16 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.42 11.83 8.54 -92.71 -0.79 11.04 16 33 H 0.16 6.79 5.91 -2.91 -0.02 6.77 16 34 H 0.20 6.60 8.06 -2.91 -0.02 6.57 16 35 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 3.07 8.07 -2.39 -0.02 3.05 16 37 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 0.99 7.89 -2.39 -0.02 0.97 16 Total: -1.00 -73.49 333.91 2.80 -70.69 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.26 Total: 18.82 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.24 Total: 18.12 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.67 Total: -129.43 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -73.49 2.80 -70.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310329846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.587 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds