Wall clock time and date at job start Tue Mar 31 2020 00:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47559 * 2 1 4 4 N 1.32159 * 120.53709 * 264.32540 * 3 2 1 5 5 C 1.31858 * 120.96800 * 180.32987 * 4 3 2 6 6 N 1.31889 * 122.09071 * 359.65619 * 5 4 3 7 7 C 1.32133 * 120.96949 * 0.02562 * 6 5 4 8 8 C 1.39923 * 120.53633 * 84.03672 * 3 2 1 9 9 C 1.47834 * 120.94143 * 359.97438 * 8 3 2 10 10 O 1.21554 * 119.99454 * 353.93566 * 9 8 3 11 11 N 1.34770 * 120.00152 * 173.94067 * 9 8 3 12 12 C 1.46500 * 120.00029 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47154 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.47244 * 294.99485 * 13 12 11 15 15 C 1.53008 * 109.46772 * 175.00077 * 13 12 11 16 16 N 1.46501 * 109.47100 * 55.00355 * 13 12 11 17 17 C 1.36939 * 119.99759 * 205.00155 * 16 13 12 18 18 H 1.08001 * 120.00022 * 359.97438 * 17 16 13 19 19 C 1.38807 * 119.99906 * 180.02562 * 17 16 13 20 20 N 1.31620 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47450 * 89.99741 * 21 19 17 23 23 H 1.48503 * 109.46875 * 209.99562 * 21 19 17 24 24 H 1.48500 * 109.47429 * 329.99194 * 21 19 17 25 25 H 1.09005 * 109.46458 * 59.99791 * 1 2 3 26 26 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46856 * 300.00033 * 1 2 3 28 28 H 1.09002 * 109.47323 * 240.00106 * 2 1 3 29 29 H 1.08998 * 109.47037 * 120.00481 * 2 1 3 30 30 H 1.07997 * 118.95614 * 179.67693 * 5 4 3 31 31 H 1.07996 * 120.53679 * 180.02562 * 7 6 5 32 32 H 0.97003 * 120.00476 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.47384 * 299.99715 * 12 11 9 34 34 H 1.09002 * 109.47494 * 59.99595 * 12 11 9 35 35 H 1.09002 * 109.47338 * 299.99476 * 15 13 12 36 36 H 1.08995 * 109.47107 * 60.00404 * 15 13 12 37 37 H 1.09004 * 109.46713 * 180.02562 * 15 13 12 38 38 H 0.96997 * 120.00022 * 24.99480 * 16 13 12 39 39 H 0.97000 * 119.99996 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3624 2.0163 -1.1327 5 6 2.8091 3.2569 -1.1419 6 7 2.9419 3.9621 -0.0353 7 6 2.6294 3.4471 1.1407 8 6 2.1514 2.1328 1.1986 9 6 1.7883 1.5125 2.4905 10 8 1.2769 0.4100 2.5127 11 7 2.0243 2.1693 3.6434 12 6 1.6639 1.5548 4.9235 13 6 2.0355 2.5017 6.0664 14 1 3.1181 2.6236 6.0998 15 6 1.5471 1.9162 7.3929 16 7 1.4037 3.8049 5.8457 17 6 1.9521 4.9333 6.3946 18 1 2.8500 4.8625 6.9905 19 6 1.3532 6.1681 6.1860 20 7 0.2586 6.2544 5.4602 21 14 2.1008 7.7072 6.9354 22 1 3.0760 8.2976 5.9838 23 1 1.0261 8.6924 7.2177 24 1 2.7944 7.3552 8.2004 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.0743 3.7102 -2.0857 31 1 2.7405 4.0309 2.0424 32 1 2.4327 3.0490 3.6257 33 1 0.5913 1.3622 4.9450 34 1 2.2040 0.6152 5.0404 35 1 0.4644 1.7943 7.3597 36 1 2.0172 0.9467 7.5571 37 1 1.8115 2.5911 8.2071 38 1 0.5971 3.8685 5.3107 39 1 -0.1597 7.1173 5.3141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317287142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:27 Heat of formation + Delta-G solvation = 15.800221 kcal Electronic energy + Delta-G solvation = -21618.644982 eV Core-core repulsion = 18368.578629 eV Total energy + Delta-G solvation = -3250.066352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35449 -39.19875 -36.53441 -35.09966 -33.66310 -32.96908 -31.98052 -30.82698 -28.78830 -26.46765 -25.00166 -24.74099 -23.66496 -21.93173 -20.66087 -20.22380 -17.90566 -17.79432 -17.16740 -16.81179 -15.59108 -15.49098 -15.05280 -14.48271 -14.25201 -14.12843 -13.93593 -13.76380 -13.40968 -13.03639 -12.54378 -12.35059 -12.17612 -12.07055 -11.69433 -11.55428 -11.43345 -10.99169 -10.91240 -10.82199 -10.65721 -10.41333 -10.08759 -9.78455 -9.69670 -9.57386 -9.34005 -9.05236 -8.75633 -7.12050 -5.88066 -3.19065 0.40415 0.95082 2.92841 3.29915 3.36843 3.42891 3.44369 3.74306 3.89752 4.01851 4.30196 4.49198 4.72761 4.86853 5.16019 5.26933 5.37826 5.38338 5.40572 5.49289 5.50305 5.73475 5.84964 5.95693 5.99852 6.08353 6.12831 6.21080 6.24224 6.34070 6.48636 6.65496 6.72248 6.83414 6.95766 7.60199 7.70602 7.92900 8.28914 8.32994 9.41376 9.94901 10.30458 11.33604 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.004963 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.496801 B = 5640.214303 C = 6788.541704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C 0.234 3.766 4 N -0.528 5.528 5 C 0.312 3.688 6 N -0.525 5.525 7 C 0.191 3.809 8 C -0.239 4.239 9 C 0.563 3.437 10 O -0.535 6.535 11 N -0.704 5.704 12 C 0.116 3.884 13 C 0.158 3.842 14 H 0.054 0.946 15 C -0.162 4.162 16 N -0.724 5.724 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.409 0.591 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.058 0.942 38 H 0.385 0.615 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.254 -10.327 -9.271 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 C 0.087 3.913 4 N -0.242 5.242 5 C 0.025 3.975 6 N -0.239 5.239 7 C 0.024 3.976 8 C -0.247 4.247 9 C 0.349 3.651 10 O -0.414 6.414 11 N -0.355 5.355 12 C -0.008 4.008 13 C 0.048 3.952 14 H 0.072 0.928 15 C -0.223 4.223 16 N -0.367 5.367 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.208 1.208 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.216 0.784 31 H 0.194 0.806 32 H 0.246 0.754 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.219 0.781 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.236 -10.530 -10.013 15.135 hybrid contribution 0.040 1.298 1.068 1.681 sum 4.276 -9.232 -8.945 13.547 Atomic orbital electron populations 1.21563 0.93195 1.02347 1.01944 1.20804 0.97448 0.88997 1.04556 1.21992 0.86233 0.96596 0.86503 1.68380 1.14018 1.12200 1.29602 1.25209 0.88612 0.86476 0.97242 1.68480 1.18144 1.38128 0.99111 1.23687 0.86205 0.90874 0.96827 1.21688 1.08476 0.97914 0.96609 1.17710 0.79070 0.85205 0.83159 1.90703 1.43938 1.19685 1.87109 1.45907 1.62089 1.21955 1.05521 1.21760 1.00746 0.96162 0.82169 1.20530 0.97030 0.86380 0.91267 0.92775 1.22358 1.01026 0.99173 0.99733 1.42485 1.31451 1.00695 1.62077 1.19212 1.07216 0.85344 1.25930 0.91065 1.24741 0.97561 0.97692 1.00488 1.69657 1.20618 1.24246 1.43163 0.86224 0.78016 0.83337 0.78773 1.21607 1.21795 1.20766 0.93363 0.91778 0.91606 0.90488 0.87088 0.78417 0.80558 0.75383 0.91438 0.91449 0.93167 0.94151 0.92264 0.78099 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.51 37.16 0.35 -1.25 16 2 C -0.08 -1.00 5.49 -27.88 -0.15 -1.15 16 3 C 0.23 3.24 6.12 -81.82 -0.50 2.74 16 4 N -0.53 -7.05 10.36 -10.48 -0.11 -7.16 16 5 C 0.31 3.82 12.27 -92.02 -1.13 2.69 16 6 N -0.53 -7.36 10.42 -14.24 -0.15 -7.51 16 7 C 0.19 2.70 10.80 -16.77 -0.18 2.52 16 8 C -0.24 -3.46 5.91 -104.69 -0.62 -4.08 16 9 C 0.56 8.72 7.73 -12.34 -0.10 8.63 16 10 O -0.53 -8.92 12.04 5.32 0.06 -8.86 16 11 N -0.70 -10.84 5.34 -61.26 -0.33 -11.17 16 12 C 0.12 1.80 5.23 -4.04 -0.02 1.78 16 13 C 0.16 2.77 3.05 -67.93 -0.21 2.57 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 16 N -0.72 -16.14 4.56 -53.42 -0.24 -16.39 16 17 C -0.25 -6.22 9.93 -15.06 -0.15 -6.37 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.93 -26.44 13.06 55.49 0.72 -25.72 16 21 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.93 6.90 -51.93 -0.36 0.57 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.11 1.47 5.93 -51.93 -0.31 1.17 16 30 H 0.20 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.18 2.38 6.58 -52.49 -0.35 2.03 16 32 H 0.41 6.38 6.31 -40.82 -0.26 6.12 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.38 9.36 7.80 -40.82 -0.32 9.04 16 39 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 328.62 15.07 4.95 4.95 Total: -1.00 -29.22 328.62 -7.91 -37.14 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.36 Total: 12.99 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -2.45 Total: 5.46 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -0.10 Total: -67.94 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.06 Total: -8.86 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.22 -7.91 -37.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317287142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.937 kcal (2) G-P(sol) polarization free energy of solvation -29.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds