Wall clock time and date at job start Tue Mar 31 2020 00:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47559 * 2 1 4 4 N 1.32159 * 120.53709 * 264.32540 * 3 2 1 5 5 C 1.31858 * 120.96800 * 180.32987 * 4 3 2 6 6 N 1.31889 * 122.09071 * 359.65619 * 5 4 3 7 7 C 1.32133 * 120.96949 * 0.02562 * 6 5 4 8 8 C 1.39923 * 120.53633 * 84.03672 * 3 2 1 9 9 C 1.47834 * 120.94143 * 359.97438 * 8 3 2 10 10 O 1.21554 * 119.99454 * 353.93566 * 9 8 3 11 11 N 1.34770 * 120.00152 * 173.94067 * 9 8 3 12 12 C 1.46500 * 120.00029 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47154 * 179.97438 * 12 11 9 14 14 H 1.08995 * 109.47244 * 294.99485 * 13 12 11 15 15 C 1.53008 * 109.46772 * 175.00077 * 13 12 11 16 16 N 1.46501 * 109.47100 * 55.00355 * 13 12 11 17 17 C 1.36939 * 119.99759 * 205.00155 * 16 13 12 18 18 H 1.08001 * 120.00022 * 359.97438 * 17 16 13 19 19 C 1.38807 * 119.99906 * 180.02562 * 17 16 13 20 20 N 1.31620 * 120.00207 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47450 * 89.99741 * 21 19 17 23 23 H 1.48503 * 109.46875 * 209.99562 * 21 19 17 24 24 H 1.48500 * 109.47429 * 329.99194 * 21 19 17 25 25 H 1.09005 * 109.46458 * 59.99791 * 1 2 3 26 26 H 1.08996 * 109.47211 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46856 * 300.00033 * 1 2 3 28 28 H 1.09002 * 109.47323 * 240.00106 * 2 1 3 29 29 H 1.08998 * 109.47037 * 120.00481 * 2 1 3 30 30 H 1.07997 * 118.95614 * 179.67693 * 5 4 3 31 31 H 1.07996 * 120.53679 * 180.02562 * 7 6 5 32 32 H 0.97003 * 120.00476 * 359.97438 * 11 9 8 33 33 H 1.08997 * 109.47384 * 299.99715 * 12 11 9 34 34 H 1.09002 * 109.47494 * 59.99595 * 12 11 9 35 35 H 1.09002 * 109.47338 * 299.99476 * 15 13 12 36 36 H 1.08995 * 109.47107 * 60.00404 * 15 13 12 37 37 H 1.09004 * 109.46713 * 180.02562 * 15 13 12 38 38 H 0.96997 * 120.00022 * 24.99480 * 16 13 12 39 39 H 0.97000 * 119.99996 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3624 2.0163 -1.1327 5 6 2.8091 3.2569 -1.1419 6 7 2.9419 3.9621 -0.0353 7 6 2.6294 3.4471 1.1407 8 6 2.1514 2.1328 1.1986 9 6 1.7883 1.5125 2.4905 10 8 1.2769 0.4100 2.5127 11 7 2.0243 2.1693 3.6434 12 6 1.6639 1.5548 4.9235 13 6 2.0355 2.5017 6.0664 14 1 3.1181 2.6236 6.0998 15 6 1.5471 1.9162 7.3929 16 7 1.4037 3.8049 5.8457 17 6 1.9521 4.9333 6.3946 18 1 2.8500 4.8625 6.9905 19 6 1.3532 6.1681 6.1860 20 7 0.2586 6.2544 5.4602 21 14 2.1008 7.7072 6.9354 22 1 3.0760 8.2976 5.9838 23 1 1.0261 8.6924 7.2177 24 1 2.7944 7.3552 8.2004 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.0743 3.7102 -2.0857 31 1 2.7405 4.0309 2.0424 32 1 2.4327 3.0490 3.6257 33 1 0.5913 1.3622 4.9450 34 1 2.2040 0.6152 5.0404 35 1 0.4644 1.7943 7.3597 36 1 2.0172 0.9467 7.5571 37 1 1.8115 2.5911 8.2071 38 1 0.5971 3.8685 5.3107 39 1 -0.1597 7.1173 5.3141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317287142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:25 Heat of formation + Delta-G solvation = -2.901578 kcal Electronic energy + Delta-G solvation = -21619.455953 eV Core-core repulsion = 18368.578629 eV Total energy + Delta-G solvation = -3250.877323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.42768 -40.41575 -37.98630 -36.22884 -35.11136 -34.16766 -33.51875 -31.95227 -30.50025 -27.67897 -26.04454 -26.03919 -25.41289 -22.95512 -21.86989 -21.67239 -19.43836 -18.97796 -18.59986 -17.86870 -16.96478 -16.74856 -16.48654 -15.86959 -15.69137 -15.26180 -15.15410 -14.92180 -14.87744 -14.30680 -13.86817 -13.63874 -13.53667 -13.38771 -13.06568 -12.77111 -12.76177 -12.53987 -12.48117 -12.17098 -12.00614 -11.71395 -11.66793 -11.64037 -10.97766 -10.79733 -10.74470 -10.40348 -10.00501 -9.01066 -7.90845 -5.19359 -0.65929 -0.12976 1.50887 1.52107 1.59202 1.75518 2.09302 2.58762 2.66916 2.91037 3.03257 3.24593 3.44054 3.61391 3.74832 3.91888 4.00010 4.21910 4.27361 4.40688 4.42427 4.49152 4.66458 4.74855 4.77693 4.87773 5.01888 5.09285 5.10832 5.23702 5.27848 5.30572 5.44256 5.58818 5.60768 5.77973 6.30055 6.45868 6.89142 7.09333 7.38132 8.10512 8.34443 9.31632 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.004963 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.496801 B = 5640.214303 C = 6788.541704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C 0.230 3.770 4 N -0.532 5.532 5 C 0.315 3.685 6 N -0.541 5.541 7 C 0.188 3.812 8 C -0.252 4.252 9 C 0.565 3.435 10 O -0.548 6.548 11 N -0.705 5.705 12 C 0.125 3.875 13 C 0.157 3.843 14 H 0.061 0.939 15 C -0.155 4.155 16 N -0.732 5.732 17 C -0.232 4.232 18 H 0.078 0.922 19 C -0.068 4.068 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.272 1.272 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.237 0.763 31 H 0.177 0.823 32 H 0.408 0.592 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.373 0.627 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -11.258 -9.738 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.115 4.115 3 C 0.083 3.917 4 N -0.247 5.247 5 C 0.029 3.971 6 N -0.255 5.255 7 C 0.022 3.978 8 C -0.259 4.259 9 C 0.351 3.649 10 O -0.428 6.428 11 N -0.355 5.355 12 C 0.001 3.999 13 C 0.048 3.952 14 H 0.079 0.921 15 C -0.215 4.215 16 N -0.373 5.373 17 C -0.364 4.364 18 H 0.096 0.904 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.231 1.231 24 H -0.197 1.197 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.060 0.940 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.253 0.747 31 H 0.194 0.806 32 H 0.245 0.755 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.205 0.795 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.406 -11.501 -10.459 16.459 hybrid contribution -0.269 1.497 1.181 1.925 sum 5.137 -10.004 -9.279 14.580 Atomic orbital electron populations 1.21514 0.93014 1.03144 1.00837 1.20805 0.97456 0.88267 1.04944 1.22272 0.85767 0.97218 0.86487 1.68478 1.14370 1.12684 1.29126 1.25993 0.86960 0.86044 0.98068 1.68540 1.18863 1.38622 0.99445 1.23730 0.86050 0.90834 0.97214 1.21606 1.09728 0.98198 0.96392 1.17831 0.78648 0.84998 0.83432 1.90694 1.44556 1.20256 1.87339 1.45890 1.62139 1.21898 1.05598 1.21650 1.00393 0.96346 0.81500 1.20720 0.96969 0.84770 0.92695 0.92109 1.22233 1.00828 1.00476 0.97984 1.42614 1.31095 1.01902 1.61691 1.19556 1.06587 0.86137 1.24141 0.90380 1.25391 0.98399 1.00330 1.01934 1.69802 1.22345 1.24072 1.45456 0.85301 0.76857 0.80171 0.78363 1.21505 1.23083 1.19683 0.92989 0.90074 0.94049 0.88711 0.87976 0.74679 0.80596 0.75541 0.92472 0.89313 0.93863 0.90686 0.93826 0.79506 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.51 71.98 0.68 -2.27 16 2 C -0.08 -1.81 5.49 29.85 0.16 -1.65 16 3 C 0.23 6.13 6.12 42.92 0.26 6.39 16 4 N -0.53 -13.30 10.36 -187.06 -1.94 -15.24 16 5 C 0.32 7.13 12.27 180.84 2.22 9.35 16 6 N -0.54 -14.59 10.42 -198.97 -2.07 -16.66 16 7 C 0.19 5.28 10.80 85.07 0.92 6.20 16 8 C -0.25 -7.17 5.91 -19.91 -0.12 -7.29 16 9 C 0.56 17.30 7.73 86.78 0.67 17.97 16 10 O -0.55 -18.01 12.04 -3.89 -0.05 -18.06 16 11 N -0.70 -21.39 5.34 -465.99 -2.49 -23.88 16 12 C 0.13 3.75 5.23 86.38 0.45 4.20 16 13 C 0.16 5.29 3.05 44.99 0.14 5.43 16 14 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 15 C -0.15 -4.78 9.49 71.98 0.68 -4.10 16 16 N -0.73 -32.42 4.56 -322.93 -1.47 -33.89 16 17 C -0.23 -11.63 9.93 84.03 0.83 -10.79 16 18 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 20 N -0.97 -55.94 13.06 21.65 0.28 -55.65 16 21 Si 0.96 43.89 29.55 68.60 2.03 45.91 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.16 6.90 -2.39 -0.02 1.14 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.62 5.93 -2.39 -0.01 2.60 16 30 H 0.24 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.18 4.81 6.58 -2.91 -0.02 4.79 16 32 H 0.41 12.68 6.31 -92.71 -0.58 12.10 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.37 18.34 7.80 -92.71 -0.72 17.61 16 39 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -61.68 328.62 1.43 -60.25 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: -0.23 Total: 36.95 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 7.38 Total: 20.28 kcal Atomic # 7 Polarization: -137.64 SS G_CDS: -7.69 Total: -145.33 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.05 Total: -18.06 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.68 1.43 -60.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317287142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.345 kcal (2) G-P(sol) polarization free energy of solvation -61.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds