Wall clock time and date at job start Tue Mar 31 2020 01:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46914 * 2 1 4 4 N 1.46500 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00025 * 275.30231 * 4 3 2 6 6 H 1.07999 * 119.99809 * 37.58052 * 5 4 3 7 7 C 1.38807 * 120.00256 * 217.57908 * 5 4 3 8 8 N 1.31622 * 120.00076 * 21.43552 * 7 5 4 9 9 Si 1.86807 * 120.00060 * 201.43178 * 7 5 4 10 10 H 1.48505 * 109.46721 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46791 * 120.00114 * 9 7 5 12 12 H 1.48498 * 109.47292 * 239.99993 * 9 7 5 13 13 C 1.46499 * 120.00122 * 95.30896 * 4 3 2 14 14 C 1.53000 * 109.47128 * 269.99456 * 13 4 3 15 15 N 1.46499 * 109.47128 * 180.02562 * 14 13 4 16 16 C 1.34777 * 119.99900 * 180.02562 * 15 14 13 17 17 O 1.21515 * 119.99969 * 0.02562 * 16 15 14 18 18 C 1.48153 * 119.99989 * 179.97438 * 16 15 14 19 19 C 1.39717 * 120.18282 * 180.28120 * 18 16 15 20 20 C 1.38827 * 117.89908 * 180.21822 * 19 18 16 21 21 C 1.38565 * 118.06508 * 359.51090 * 20 19 18 22 22 N 1.32169 * 120.07075 * 0.25448 * 21 20 19 23 23 N 1.28352 * 122.30116 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46856 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47150 * 300.00599 * 1 2 3 26 26 H 1.09002 * 109.46551 * 60.00836 * 1 2 3 27 27 H 1.08997 * 109.47294 * 239.99871 * 2 1 3 28 28 H 1.09001 * 109.46572 * 119.99716 * 2 1 3 29 29 H 1.08992 * 109.47701 * 59.99738 * 3 2 1 30 30 H 1.09002 * 109.46828 * 299.98994 * 3 2 1 31 31 H 0.97008 * 119.99827 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.47075 * 149.99690 * 13 4 3 33 33 H 1.08998 * 109.47539 * 30.00025 * 13 4 3 34 34 H 1.09004 * 109.46510 * 60.00005 * 14 13 4 35 35 H 1.08993 * 109.47380 * 300.00200 * 14 13 4 36 36 H 0.96999 * 120.00066 * 0.02562 * 15 14 13 37 37 H 1.08001 * 121.05092 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.96336 * 179.79057 * 20 19 18 39 39 H 1.08009 * 119.96384 * 180.27104 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3331 1.1818 6 1 3.8169 0.6877 1.9636 7 6 5.3612 2.0515 1.3741 8 7 5.6019 3.1241 0.6503 9 14 6.5968 1.4961 2.6604 10 1 6.0940 0.2714 3.3333 11 1 7.8960 1.2019 2.0041 12 1 6.7827 2.5730 3.6657 13 6 4.2380 1.5597 -1.2624 14 6 4.4934 0.1641 -1.8352 15 7 5.2270 0.2813 -3.0979 16 6 5.5639 -0.8270 -3.7868 17 8 5.2588 -1.9234 -3.3608 18 6 6.3053 -0.7085 -5.0640 19 6 6.6514 -1.8546 -5.7842 20 6 7.3498 -1.6889 -6.9725 21 6 7.6518 -0.3983 -7.3766 22 7 7.2812 0.6315 -6.6356 23 7 6.6392 0.4877 -5.5335 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 6.4208 3.6264 0.7850 32 1 5.1904 2.0593 -1.0847 33 1 3.6493 2.1415 -1.9716 34 1 3.5410 -0.3355 -2.0128 35 1 5.0821 -0.4176 -1.1261 36 1 5.4702 1.1565 -3.4381 37 1 6.3867 -2.8386 -5.4263 38 1 7.6452 -2.5409 -7.5669 39 1 8.1903 -0.2337 -8.2983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317544730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:25 Heat of formation + Delta-G solvation = 34.952402 kcal Electronic energy + Delta-G solvation = -21183.046211 eV Core-core repulsion = 17933.810360 eV Total energy + Delta-G solvation = -3249.235852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.27850 -39.09365 -36.50056 -34.43597 -33.36623 -32.97623 -32.73239 -30.77309 -28.31737 -25.59552 -25.47342 -24.75775 -23.31898 -21.20102 -20.71206 -20.12443 -18.32028 -17.47846 -16.91758 -16.54027 -15.62251 -15.36353 -15.02475 -14.68337 -14.48540 -14.25452 -13.86265 -13.65655 -13.33249 -12.95936 -12.79794 -12.63350 -11.69425 -11.57215 -11.52022 -11.19117 -10.94095 -10.73991 -10.56572 -10.44822 -10.37033 -10.27086 -10.12372 -10.01859 -9.92962 -9.87068 -9.62461 -8.62895 -8.46985 -6.62186 -5.82884 -3.42154 0.28937 0.51078 2.69684 3.18398 3.35300 3.44166 3.47272 3.57949 3.79013 4.19782 4.40062 4.43852 4.50068 4.74258 4.93449 5.28079 5.43083 5.49364 5.60813 5.67138 5.76581 5.82891 6.01415 6.10029 6.19646 6.29052 6.41845 6.51691 6.62331 6.66421 6.76839 6.98032 6.98945 7.18482 7.54348 7.77676 7.81436 8.30484 8.40236 8.48685 9.14674 9.76707 10.34519 11.17144 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.004565 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.294821 B = 6132.103398 C = 7203.522142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.885 5.885 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.136 3.864 14 C 0.094 3.906 15 N -0.692 5.692 16 C 0.565 3.435 17 O -0.537 6.537 18 C 0.033 3.967 19 C -0.068 4.068 20 C -0.124 4.124 21 C 0.049 3.951 22 N -0.241 5.241 23 N -0.209 5.209 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.255 0.745 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -7.671 -14.634 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.009 3.991 14 C -0.031 4.031 15 N -0.342 5.342 16 C 0.346 3.654 17 O -0.413 6.413 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.153 4.153 21 C -0.114 4.114 22 N -0.084 5.084 23 N -0.056 5.056 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.245 0.755 37 H 0.180 0.820 38 H 0.174 0.826 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.765 -6.636 -14.024 15.534 hybrid contribution 0.976 -1.550 0.131 1.837 sum 1.742 -8.186 -13.893 16.219 Atomic orbital electron populations 1.21721 0.97346 1.00380 1.01015 1.22189 0.93808 1.00966 1.01554 1.20945 0.85040 0.92960 0.98978 1.43608 0.99439 1.84782 1.02034 1.19054 1.05709 1.20525 0.93937 0.91989 1.25189 1.00806 0.94533 0.98065 1.70002 1.25616 1.14746 1.42345 0.86356 0.81534 0.78461 0.81231 1.19959 1.21411 1.21554 1.21074 1.00570 0.90978 0.86508 1.22627 0.94878 1.03314 0.82246 1.46064 1.55448 1.08787 1.23871 1.17603 0.79817 0.85314 0.82649 1.90786 1.55291 1.26417 1.68846 1.23097 0.98837 0.91838 0.97628 1.22479 0.93134 1.00932 0.93202 1.22448 0.97004 0.99374 0.96484 1.24504 0.96360 0.90167 1.00364 1.73169 1.06425 1.28971 0.99823 1.73276 1.05171 1.21488 1.05659 0.93831 0.93196 0.93464 0.92961 0.92336 0.93541 0.94702 0.93482 0.88221 0.95035 0.92525 0.91297 0.75494 0.81992 0.82573 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.65 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.05 5.72 -4.04 -0.02 3.03 16 4 N -0.58 -13.99 2.43 -173.24 -0.42 -14.41 16 5 C -0.26 -7.02 9.45 -15.06 -0.14 -7.16 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.40 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -24.87 11.47 55.49 0.64 -24.23 16 9 Si 0.90 21.43 29.60 -169.99 -5.03 16.40 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.14 3.06 5.45 -4.04 -0.02 3.04 16 14 C 0.09 1.92 6.00 -4.04 -0.02 1.89 16 15 N -0.69 -12.36 5.55 -61.15 -0.34 -12.70 16 16 C 0.56 9.82 7.82 -12.19 -0.10 9.72 16 17 O -0.54 -10.59 16.39 5.35 0.09 -10.50 16 18 C 0.03 0.47 6.83 -82.83 -0.57 -0.10 16 19 C -0.07 -0.74 9.73 -38.81 -0.38 -1.12 16 20 C -0.12 -0.95 10.20 -39.24 -0.40 -1.35 16 21 C 0.05 0.42 11.31 -17.29 -0.20 0.23 16 22 N -0.24 -3.13 11.51 30.58 0.35 -2.78 16 23 N -0.21 -3.10 10.75 33.32 0.36 -2.75 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.97 6.64 -51.93 -0.34 0.63 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.10 2.53 5.52 -51.92 -0.29 2.24 16 33 H 0.03 0.66 7.86 -51.93 -0.41 0.26 16 34 H 0.06 1.15 6.64 -51.93 -0.34 0.81 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.41 6.84 7.83 -40.82 -0.32 6.52 16 37 H 0.16 1.57 7.72 -52.49 -0.41 1.16 16 38 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.18 0.81 8.06 -52.48 -0.42 0.38 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -31.37 333.80 -6.50 -37.88 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.45 Total: 4.19 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.73 Total: 3.88 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.59 Total: -56.87 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.37 -6.50 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317544730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.828 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds