Wall clock time and date at job start Tue Mar 31 2020 01:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46914 * 2 1 4 4 N 1.46500 * 109.46812 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00025 * 275.30231 * 4 3 2 6 6 H 1.07999 * 119.99809 * 37.58052 * 5 4 3 7 7 C 1.38807 * 120.00256 * 217.57908 * 5 4 3 8 8 N 1.31622 * 120.00076 * 21.43552 * 7 5 4 9 9 Si 1.86807 * 120.00060 * 201.43178 * 7 5 4 10 10 H 1.48505 * 109.46721 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46791 * 120.00114 * 9 7 5 12 12 H 1.48498 * 109.47292 * 239.99993 * 9 7 5 13 13 C 1.46499 * 120.00122 * 95.30896 * 4 3 2 14 14 C 1.53000 * 109.47128 * 269.99456 * 13 4 3 15 15 N 1.46499 * 109.47128 * 180.02562 * 14 13 4 16 16 C 1.34777 * 119.99900 * 180.02562 * 15 14 13 17 17 O 1.21515 * 119.99969 * 0.02562 * 16 15 14 18 18 C 1.48153 * 119.99989 * 179.97438 * 16 15 14 19 19 C 1.39717 * 120.18282 * 180.28120 * 18 16 15 20 20 C 1.38827 * 117.89908 * 180.21822 * 19 18 16 21 21 C 1.38565 * 118.06508 * 359.51090 * 20 19 18 22 22 N 1.32169 * 120.07075 * 0.25448 * 21 20 19 23 23 N 1.28352 * 122.30116 * 359.97438 * 22 21 20 24 24 H 1.08997 * 109.46856 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47150 * 300.00599 * 1 2 3 26 26 H 1.09002 * 109.46551 * 60.00836 * 1 2 3 27 27 H 1.08997 * 109.47294 * 239.99871 * 2 1 3 28 28 H 1.09001 * 109.46572 * 119.99716 * 2 1 3 29 29 H 1.08992 * 109.47701 * 59.99738 * 3 2 1 30 30 H 1.09002 * 109.46828 * 299.98994 * 3 2 1 31 31 H 0.97008 * 119.99827 * 179.97438 * 8 7 5 32 32 H 1.09009 * 109.47075 * 149.99690 * 13 4 3 33 33 H 1.08998 * 109.47539 * 30.00025 * 13 4 3 34 34 H 1.09004 * 109.46510 * 60.00005 * 14 13 4 35 35 H 1.08993 * 109.47380 * 300.00200 * 14 13 4 36 36 H 0.96999 * 120.00066 * 0.02562 * 15 14 13 37 37 H 1.08001 * 121.05092 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.96336 * 179.79057 * 20 19 18 39 39 H 1.08009 * 119.96384 * 180.27104 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3331 1.1818 6 1 3.8169 0.6877 1.9636 7 6 5.3612 2.0515 1.3741 8 7 5.6019 3.1241 0.6503 9 14 6.5968 1.4961 2.6604 10 1 6.0940 0.2714 3.3333 11 1 7.8960 1.2019 2.0041 12 1 6.7827 2.5730 3.6657 13 6 4.2380 1.5597 -1.2624 14 6 4.4934 0.1641 -1.8352 15 7 5.2270 0.2813 -3.0979 16 6 5.5639 -0.8270 -3.7868 17 8 5.2588 -1.9234 -3.3608 18 6 6.3053 -0.7085 -5.0640 19 6 6.6514 -1.8546 -5.7842 20 6 7.3498 -1.6889 -6.9725 21 6 7.6518 -0.3983 -7.3766 22 7 7.2812 0.6315 -6.6356 23 7 6.6392 0.4877 -5.5335 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8901 31 1 6.4208 3.6264 0.7850 32 1 5.1904 2.0593 -1.0847 33 1 3.6493 2.1415 -1.9716 34 1 3.5410 -0.3355 -2.0128 35 1 5.0821 -0.4176 -1.1261 36 1 5.4702 1.1565 -3.4381 37 1 6.3867 -2.8386 -5.4263 38 1 7.6452 -2.5409 -7.5669 39 1 8.1903 -0.2337 -8.2983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317544730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:23 Heat of formation + Delta-G solvation = 13.383120 kcal Electronic energy + Delta-G solvation = -21183.981526 eV Core-core repulsion = 17933.810360 eV Total energy + Delta-G solvation = -3250.171166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.21475 -40.45815 -38.27391 -35.93039 -34.62314 -34.19642 -33.82965 -32.56326 -29.93449 -27.34825 -26.64557 -25.62928 -24.86638 -22.73010 -22.19868 -21.75864 -19.60018 -18.51239 -18.38477 -17.59971 -17.08133 -16.85929 -16.69894 -16.03849 -15.84002 -15.60409 -15.42852 -14.85742 -14.64591 -14.33009 -14.30837 -14.12267 -13.34824 -13.09784 -12.94750 -12.66528 -12.61986 -12.50332 -12.23533 -12.04516 -11.87669 -11.70624 -11.39474 -11.33417 -11.22273 -11.20877 -10.86265 -10.55177 -10.14502 -8.60930 -7.86630 -5.50255 -0.60979 -0.26893 1.41721 1.46516 1.54479 1.55801 1.90628 2.48398 2.57761 2.78385 3.21001 3.41166 3.58314 3.72705 3.81121 3.92633 4.13892 4.21212 4.30606 4.35812 4.49963 4.67796 4.69565 4.75769 4.84664 4.86207 4.99168 5.12364 5.15684 5.21980 5.25498 5.28629 5.44207 5.62736 5.64013 5.71957 6.34408 6.45206 6.94338 7.13679 7.47846 7.80972 8.33699 9.09355 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015294 B = 0.004565 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.294821 B = 6132.103398 C = 7203.522142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.055 0.945 7 C -0.029 4.029 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.144 3.856 14 C 0.118 3.882 15 N -0.694 5.694 16 C 0.566 3.434 17 O -0.566 6.566 18 C 0.009 3.991 19 C -0.077 4.077 20 C -0.094 4.094 21 C 0.059 3.941 22 N -0.275 5.275 23 N -0.239 5.239 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.253 0.747 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.039 0.961 36 H 0.414 0.586 37 H 0.171 0.829 38 H 0.210 0.790 39 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.285 -9.109 -16.844 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.019 3.981 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.073 0.927 7 C -0.227 4.227 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.017 3.983 14 C -0.008 4.008 15 N -0.344 5.344 16 C 0.350 3.650 17 O -0.444 6.444 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.123 4.123 21 C -0.103 4.103 22 N -0.117 5.117 23 N -0.086 5.086 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.251 0.749 37 H 0.188 0.812 38 H 0.227 0.773 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.110 -8.068 -16.247 18.174 hybrid contribution 0.894 -1.138 0.658 1.590 sum 2.004 -9.207 -15.589 18.215 Atomic orbital electron populations 1.21654 0.94252 1.01822 1.01961 1.22011 0.96418 0.98613 1.00382 1.21066 0.83234 0.94702 0.99064 1.43836 1.00897 1.85085 1.01836 1.19208 1.06218 1.19921 0.94644 0.92742 1.25788 1.02195 0.94687 1.00017 1.70103 1.25886 1.15673 1.43868 0.85483 0.79265 0.78129 0.79237 1.19415 1.21812 1.21297 1.20903 0.99243 0.91853 0.86342 1.22089 0.94608 1.01334 0.82794 1.45942 1.55698 1.09576 1.23185 1.18049 0.79142 0.84382 0.83464 1.90751 1.56483 1.27233 1.69972 1.22696 1.00596 0.93485 0.96967 1.22712 0.93630 1.00040 0.94221 1.23013 0.93877 1.00621 0.94781 1.25301 0.94596 0.89702 1.00730 1.73081 1.07505 1.31204 0.99957 1.73189 1.06428 1.21938 1.07020 0.92156 0.92602 0.92186 0.93517 0.94108 0.94545 0.93394 0.93740 0.91017 0.93910 0.92395 0.94234 0.74901 0.81151 0.77337 0.76052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.86 6.23 30.59 0.19 -4.67 16 3 C 0.14 6.04 5.72 86.38 0.49 6.53 16 4 N -0.60 -29.50 2.43 -702.01 -1.71 -31.21 16 5 C -0.27 -14.77 9.45 84.03 0.79 -13.98 16 6 H 0.05 3.01 7.92 -2.91 -0.02 2.99 16 7 C -0.03 -1.60 4.95 84.86 0.42 -1.17 16 8 N -0.91 -52.57 11.47 21.65 0.25 -52.32 16 9 Si 0.95 44.96 29.60 68.60 2.03 46.99 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 C 0.14 6.67 5.45 86.38 0.47 7.14 16 14 C 0.12 4.97 6.00 86.38 0.52 5.49 16 15 N -0.69 -25.76 5.55 -465.68 -2.58 -28.34 16 16 C 0.57 20.19 7.82 86.88 0.68 20.87 16 17 O -0.57 -22.84 16.39 -3.76 -0.06 -22.90 16 18 C 0.01 0.27 6.83 41.99 0.29 0.55 16 19 C -0.08 -1.52 9.73 22.77 0.22 -1.29 16 20 C -0.09 -1.02 10.20 22.49 0.23 -0.79 16 21 C 0.06 0.80 11.31 84.72 0.96 1.75 16 22 N -0.28 -6.73 11.51 -57.15 -0.66 -7.39 16 23 N -0.24 -7.08 10.75 -48.49 -0.52 -7.60 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 1.73 6.64 -2.39 -0.02 1.71 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 30 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 31 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.07 3.79 5.52 -2.38 -0.01 3.78 16 33 H 0.04 1.85 7.86 -2.39 -0.02 1.83 16 34 H 0.06 2.42 6.64 -2.38 -0.02 2.40 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 14.51 7.83 -92.71 -0.73 13.79 16 37 H 0.17 2.99 7.72 -2.91 -0.02 2.96 16 38 H 0.21 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.22 0.79 8.06 -2.91 -0.02 0.76 16 Total: -1.00 -71.15 333.80 3.06 -68.09 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.33 Total: 17.40 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.98 Total: 17.28 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -5.22 Total: -126.86 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.06 Total: -22.90 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.15 3.06 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317544730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.474 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds