Wall clock time and date at job start Tue Mar 31 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47518 * 2 1 4 4 N 1.46502 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.36931 * 119.99996 * 275.31213 * 4 3 2 6 6 H 1.08001 * 120.00384 * 37.58127 * 5 4 3 7 7 C 1.38817 * 120.00107 * 217.57624 * 5 4 3 8 8 N 1.31626 * 119.99594 * 21.42588 * 7 5 4 9 9 Si 1.86794 * 120.00363 * 201.42809 * 7 5 4 10 10 H 1.48506 * 109.47215 * 89.99913 * 9 7 5 11 11 H 1.48498 * 109.47227 * 209.99867 * 9 7 5 12 12 H 1.48501 * 109.46976 * 330.00211 * 9 7 5 13 13 C 1.46501 * 119.99880 * 95.31355 * 4 3 2 14 14 C 1.52999 * 109.46833 * 270.00244 * 13 4 3 15 15 N 1.46501 * 109.46833 * 179.97438 * 14 13 4 16 16 C 1.34787 * 120.00005 * 180.02562 * 15 14 13 17 17 O 1.21472 * 119.99728 * 0.26574 * 16 15 14 18 18 C 1.48455 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.39532 * 120.54886 * 179.97438 * 18 16 15 20 20 C 1.38756 * 118.26534 * 179.97438 * 19 18 16 21 21 N 1.32206 * 119.14858 * 359.97438 * 20 19 18 22 22 C 1.31880 * 121.03275 * 0.02562 * 21 20 19 23 23 N 1.31584 * 121.91719 * 359.71677 * 22 21 20 24 24 H 1.09003 * 109.46837 * 299.99908 * 1 2 3 25 25 H 1.09005 * 109.47054 * 59.99465 * 1 2 3 26 26 H 1.08992 * 109.47706 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46837 * 240.00091 * 2 1 3 28 28 H 1.08998 * 109.47367 * 120.00779 * 2 1 3 29 29 H 1.09003 * 109.46992 * 60.00187 * 3 2 1 30 30 H 1.09005 * 109.47394 * 300.00326 * 3 2 1 31 31 H 0.97003 * 119.99854 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47520 * 149.99791 * 13 4 3 33 33 H 1.09003 * 109.47066 * 29.99478 * 13 4 3 34 34 H 1.08995 * 109.47676 * 59.99986 * 14 13 4 35 35 H 1.09002 * 109.47397 * 299.99348 * 14 13 4 36 36 H 0.96993 * 120.00542 * 359.97438 * 15 14 13 37 37 H 1.08006 * 120.86606 * 0.02562 * 19 18 16 38 38 H 1.08004 * 120.42609 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.04188 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1892 1.3327 1.1817 6 1 3.8170 0.6873 1.9635 7 6 5.3614 2.0511 1.3741 8 7 5.6022 3.1237 0.6502 9 14 6.5969 1.4956 2.6603 10 1 7.5670 0.5567 2.0417 11 1 7.3221 2.6770 3.1928 12 1 5.8838 0.8114 3.7687 13 6 4.2381 1.5596 -1.2624 14 6 4.4932 0.1641 -1.8354 15 7 5.2256 0.2814 -3.0987 16 6 5.5622 -0.8269 -3.7880 17 8 5.2540 -1.9227 -3.3641 18 6 6.3050 -0.7081 -5.0679 19 6 6.6597 -1.8478 -5.7905 20 6 7.3529 -1.6817 -6.9809 21 7 7.6511 -0.4595 -7.3874 22 6 7.3005 0.5967 -6.6798 23 7 6.6383 0.4874 -5.5480 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.4210 3.6259 0.7850 32 1 5.1904 2.0592 -1.0848 33 1 3.6493 2.1415 -1.9716 34 1 3.5409 -0.3354 -2.0131 35 1 5.0820 -0.4178 -1.1263 36 1 5.4678 1.1566 -3.4396 37 1 6.4007 -2.8335 -5.4329 38 1 7.6444 -2.5398 -7.5684 39 1 7.5603 1.5803 -7.0423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317545247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:27 Heat of formation + Delta-G solvation = 26.065499 kcal Electronic energy + Delta-G solvation = -21181.702540 eV Core-core repulsion = 17932.081323 eV Total energy + Delta-G solvation = -3249.621217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.30103 -39.10901 -36.52467 -34.50818 -33.89694 -32.88002 -32.26520 -30.81884 -28.41310 -25.64465 -25.52480 -24.56018 -23.31766 -21.21700 -20.72764 -20.14979 -18.38885 -17.75401 -16.66519 -15.65793 -15.58927 -15.48779 -15.35710 -14.97841 -14.50141 -14.27733 -13.90863 -13.88331 -13.48394 -12.98531 -12.82060 -12.66759 -11.59601 -11.55221 -11.22286 -11.18424 -11.01206 -10.95501 -10.77189 -10.48412 -10.39284 -10.30129 -10.08304 -9.97009 -9.90688 -9.70305 -9.44490 -8.65263 -8.49170 -6.65044 -5.85592 -3.44883 0.35145 0.69707 2.82573 3.15631 3.34734 3.42111 3.43784 3.71222 3.82271 3.88881 4.41673 4.50500 4.72916 4.80805 5.25114 5.29909 5.40798 5.48244 5.65318 5.74735 5.98736 6.02839 6.07408 6.16682 6.26840 6.39370 6.49615 6.56543 6.60246 6.64054 6.76150 6.95414 6.96542 7.16286 7.50633 7.66010 7.78662 7.84905 8.33980 8.46047 9.12062 9.73958 10.31800 11.14482 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004547 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.163065 B = 6156.662016 C = 7228.241527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.263 4.263 6 H 0.063 0.937 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.094 3.906 15 N -0.691 5.691 16 C 0.558 3.442 17 O -0.533 6.533 18 C 0.140 3.860 19 C -0.173 4.173 20 C 0.147 3.853 21 N -0.512 5.512 22 C 0.293 3.707 23 N -0.494 5.494 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -5.645 -13.327 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.393 4.393 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.009 3.991 14 C -0.031 4.031 15 N -0.341 5.341 16 C 0.340 3.660 17 O -0.409 6.409 18 C -0.009 4.009 19 C -0.196 4.196 20 C -0.020 4.020 21 N -0.227 5.227 22 C 0.005 3.995 23 N -0.211 5.211 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.245 0.755 37 H 0.178 0.822 38 H 0.192 0.808 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.397 -5.335 -13.229 14.269 hybrid contribution 0.692 -0.747 0.700 1.236 sum 1.090 -6.082 -12.529 13.970 Atomic orbital electron populations 1.21721 0.97324 1.00402 1.01016 1.22188 0.93831 1.00944 1.01559 1.20947 0.85007 0.92975 0.98981 1.43602 0.99451 1.84773 1.02024 1.19037 1.05732 1.20545 0.93959 0.91980 1.25189 1.00797 0.94496 0.98092 1.69995 1.25640 1.14702 1.42445 0.86392 0.81638 0.77900 0.81485 1.21252 1.21671 1.20117 1.21065 1.00522 0.90960 0.86508 1.22635 0.94902 1.03319 0.82266 1.46051 1.55440 1.08815 1.23751 1.17843 0.80012 0.85284 0.82872 1.90781 1.54895 1.26484 1.68775 1.21904 0.94277 0.89442 0.95252 1.23013 0.98709 1.01651 0.96232 1.23336 0.90701 0.95411 0.92558 1.68362 1.20048 0.99928 1.34326 1.25024 0.89748 0.98387 0.86374 1.68400 1.11822 1.26575 1.14289 0.93184 0.93472 0.93811 0.92971 0.92325 0.93522 0.94713 0.93448 0.88259 0.95098 0.92548 0.91311 0.75520 0.82196 0.80766 0.78100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.63 6.23 -26.73 -0.17 -2.79 16 3 C 0.15 3.02 5.72 -4.04 -0.02 3.00 16 4 N -0.58 -13.84 2.43 -173.24 -0.42 -14.26 16 5 C -0.26 -6.97 9.45 -15.06 -0.14 -7.12 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.40 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -24.59 11.47 55.49 0.64 -23.95 16 9 Si 0.90 21.29 29.60 -169.99 -5.03 16.25 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.14 3.03 5.45 -4.04 -0.02 3.01 16 14 C 0.09 1.88 6.00 -4.04 -0.02 1.86 16 15 N -0.69 -12.05 5.55 -61.05 -0.34 -12.39 16 16 C 0.56 9.58 7.83 -12.04 -0.09 9.48 16 17 O -0.53 -10.52 16.43 5.39 0.09 -10.43 16 18 C 0.14 1.96 6.79 -82.64 -0.56 1.40 16 19 C -0.17 -1.95 9.72 -38.91 -0.38 -2.33 16 20 C 0.15 1.36 11.31 -17.20 -0.19 1.17 16 21 N -0.51 -5.46 10.42 -14.60 -0.15 -5.61 16 22 C 0.29 3.14 12.27 -92.26 -1.13 2.01 16 23 N -0.49 -6.47 9.70 -11.14 -0.11 -6.58 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 30 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.10 2.48 5.52 -51.93 -0.29 2.19 16 33 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 34 H 0.06 1.14 6.64 -51.93 -0.34 0.79 16 35 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.41 6.57 7.86 -40.82 -0.32 6.25 16 37 H 0.16 1.63 7.74 -52.48 -0.41 1.22 16 38 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -30.59 333.79 -8.20 -38.80 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.45 Total: 4.93 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -2.46 Total: 8.22 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.38 Total: -62.79 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.59 -8.20 -38.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317545247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.861 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds