Wall clock time and date at job start Tue Mar 31 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47518 * 2 1 4 4 N 1.46502 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.36931 * 119.99996 * 275.31213 * 4 3 2 6 6 H 1.08001 * 120.00384 * 37.58127 * 5 4 3 7 7 C 1.38817 * 120.00107 * 217.57624 * 5 4 3 8 8 N 1.31626 * 119.99594 * 21.42588 * 7 5 4 9 9 Si 1.86794 * 120.00363 * 201.42809 * 7 5 4 10 10 H 1.48506 * 109.47215 * 89.99913 * 9 7 5 11 11 H 1.48498 * 109.47227 * 209.99867 * 9 7 5 12 12 H 1.48501 * 109.46976 * 330.00211 * 9 7 5 13 13 C 1.46501 * 119.99880 * 95.31355 * 4 3 2 14 14 C 1.52999 * 109.46833 * 270.00244 * 13 4 3 15 15 N 1.46501 * 109.46833 * 179.97438 * 14 13 4 16 16 C 1.34787 * 120.00005 * 180.02562 * 15 14 13 17 17 O 1.21472 * 119.99728 * 0.26574 * 16 15 14 18 18 C 1.48455 * 119.99961 * 180.02562 * 16 15 14 19 19 C 1.39532 * 120.54886 * 179.97438 * 18 16 15 20 20 C 1.38756 * 118.26534 * 179.97438 * 19 18 16 21 21 N 1.32206 * 119.14858 * 359.97438 * 20 19 18 22 22 C 1.31880 * 121.03275 * 0.02562 * 21 20 19 23 23 N 1.31584 * 121.91719 * 359.71677 * 22 21 20 24 24 H 1.09003 * 109.46837 * 299.99908 * 1 2 3 25 25 H 1.09005 * 109.47054 * 59.99465 * 1 2 3 26 26 H 1.08992 * 109.47706 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46837 * 240.00091 * 2 1 3 28 28 H 1.08998 * 109.47367 * 120.00779 * 2 1 3 29 29 H 1.09003 * 109.46992 * 60.00187 * 3 2 1 30 30 H 1.09005 * 109.47394 * 300.00326 * 3 2 1 31 31 H 0.97003 * 119.99854 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.47520 * 149.99791 * 13 4 3 33 33 H 1.09003 * 109.47066 * 29.99478 * 13 4 3 34 34 H 1.08995 * 109.47676 * 59.99986 * 14 13 4 35 35 H 1.09002 * 109.47397 * 299.99348 * 14 13 4 36 36 H 0.96993 * 120.00542 * 359.97438 * 15 14 13 37 37 H 1.08006 * 120.86606 * 0.02562 * 19 18 16 38 38 H 1.08004 * 120.42609 * 180.02562 * 20 19 18 39 39 H 1.07997 * 119.04188 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 0.0006 5 6 4.1892 1.3327 1.1817 6 1 3.8170 0.6873 1.9635 7 6 5.3614 2.0511 1.3741 8 7 5.6022 3.1237 0.6502 9 14 6.5969 1.4956 2.6603 10 1 7.5670 0.5567 2.0417 11 1 7.3221 2.6770 3.1928 12 1 5.8838 0.8114 3.7687 13 6 4.2381 1.5596 -1.2624 14 6 4.4932 0.1641 -1.8354 15 7 5.2256 0.2814 -3.0987 16 6 5.5622 -0.8269 -3.7880 17 8 5.2540 -1.9227 -3.3641 18 6 6.3050 -0.7081 -5.0679 19 6 6.6597 -1.8478 -5.7905 20 6 7.3529 -1.6817 -6.9809 21 7 7.6511 -0.4595 -7.3874 22 6 7.3005 0.5967 -6.6798 23 7 6.6383 0.4874 -5.5480 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 6.4210 3.6259 0.7850 32 1 5.1904 2.0592 -1.0848 33 1 3.6493 2.1415 -1.9716 34 1 3.5409 -0.3354 -2.0131 35 1 5.0820 -0.4178 -1.1263 36 1 5.4678 1.1566 -3.4396 37 1 6.4007 -2.8335 -5.4329 38 1 7.6444 -2.5398 -7.5684 39 1 7.5603 1.5803 -7.0423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317545247.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:27 Heat of formation + Delta-G solvation = 6.709379 kcal Electronic energy + Delta-G solvation = -21182.541884 eV Core-core repulsion = 17932.081323 eV Total energy + Delta-G solvation = -3250.460561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.24073 -40.46145 -38.27692 -35.95328 -34.90927 -34.58757 -33.16394 -32.60605 -30.02001 -27.34976 -26.76478 -25.44675 -24.84527 -22.72922 -22.19258 -21.75964 -19.66781 -18.66893 -18.50699 -17.09779 -16.87641 -16.69595 -16.50373 -16.43116 -16.01002 -15.74798 -15.40467 -14.97475 -14.71726 -14.53435 -14.32960 -14.29942 -13.34895 -13.10191 -12.94868 -12.64342 -12.53436 -12.24892 -12.05666 -12.03579 -11.94455 -11.88000 -11.70897 -11.65052 -11.28964 -10.85542 -10.55271 -10.43104 -10.14678 -8.61175 -7.87039 -5.50498 -0.64242 -0.10063 1.42835 1.47007 1.53788 1.60685 1.87652 2.48174 2.75945 2.82621 3.16620 3.20586 3.48946 3.72752 3.78502 4.01347 4.20494 4.29742 4.35352 4.47608 4.53891 4.63764 4.68168 4.70478 4.84555 4.98967 5.11775 5.21547 5.23994 5.24847 5.27717 5.43896 5.62220 5.63277 5.69993 5.73588 6.35788 6.45088 6.86930 6.98555 7.13644 7.80708 8.33302 9.08850 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.004547 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.163065 B = 6156.662016 C = 7228.241527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.054 0.946 7 C -0.027 4.027 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.270 1.270 13 C 0.145 3.855 14 C 0.117 3.883 15 N -0.690 5.690 16 C 0.558 3.442 17 O -0.564 6.564 18 C 0.115 3.885 19 C -0.170 4.170 20 C 0.163 3.837 21 N -0.516 5.516 22 C 0.291 3.709 23 N -0.513 5.513 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.254 0.746 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.416 0.584 37 H 0.169 0.831 38 H 0.219 0.781 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 -6.408 -15.047 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.401 4.401 6 H 0.072 0.928 7 C -0.225 4.225 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.194 1.194 13 C 0.018 3.982 14 C -0.009 4.009 15 N -0.341 5.341 16 C 0.342 3.658 17 O -0.443 6.443 18 C -0.032 4.032 19 C -0.193 4.193 20 C -0.005 4.005 21 N -0.230 5.230 22 C 0.004 3.996 23 N -0.230 5.230 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.253 0.747 37 H 0.186 0.814 38 H 0.236 0.764 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.472 -6.087 -14.959 16.157 hybrid contribution 0.666 -0.528 1.131 1.414 sum 1.138 -6.616 -13.828 15.371 Atomic orbital electron populations 1.21655 0.94264 1.01809 1.01971 1.22013 0.96414 0.98662 1.00360 1.21065 0.83234 0.94652 0.99090 1.43831 1.00894 1.85062 1.01859 1.19184 1.06263 1.19972 0.94696 0.92821 1.25767 1.02124 0.94660 0.99996 1.70091 1.25889 1.15554 1.43871 0.85537 0.79582 0.77261 0.79717 1.21712 1.21573 1.19427 1.20902 0.99265 0.91765 0.86311 1.22099 0.94575 1.01408 0.82828 1.45903 1.55575 1.09615 1.22970 1.18305 0.79369 0.84391 0.83704 1.90750 1.56143 1.27422 1.69944 1.21487 0.96024 0.91118 0.94585 1.23202 0.98456 1.01061 0.96601 1.24030 0.88601 0.96236 0.91603 1.68488 1.19909 1.00434 1.34205 1.25648 0.88695 0.99829 0.85438 1.68347 1.12860 1.26306 1.15509 0.92604 0.92158 0.92198 0.93535 0.94147 0.94566 0.93315 0.93700 0.90935 0.93805 0.92511 0.94393 0.74700 0.81366 0.76440 0.75179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.09 16 2 C -0.13 -4.81 6.23 30.59 0.19 -4.62 16 3 C 0.14 5.94 5.72 86.38 0.49 6.44 16 4 N -0.60 -28.99 2.43 -701.99 -1.71 -30.70 16 5 C -0.27 -14.65 9.45 84.04 0.79 -13.86 16 6 H 0.05 2.94 7.92 -2.91 -0.02 2.92 16 7 C -0.03 -1.49 4.95 84.86 0.42 -1.07 16 8 N -0.91 -51.51 11.47 21.65 0.25 -51.26 16 9 Si 0.95 44.43 29.60 68.60 2.03 46.46 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 13 C 0.14 6.53 5.45 86.38 0.47 7.01 16 14 C 0.12 4.83 6.00 86.38 0.52 5.34 16 15 N -0.69 -24.56 5.55 -465.38 -2.58 -27.14 16 16 C 0.56 19.37 7.83 86.97 0.68 20.05 16 17 O -0.56 -22.62 16.43 -3.63 -0.06 -22.68 16 18 C 0.11 3.14 6.79 41.99 0.29 3.43 16 19 C -0.17 -3.52 9.72 22.71 0.22 -3.30 16 20 C 0.16 2.48 11.31 84.76 0.96 3.44 16 21 N -0.52 -9.47 10.42 -200.09 -2.09 -11.55 16 22 C 0.29 5.61 12.27 180.92 2.22 7.83 16 23 N -0.51 -12.89 9.70 -189.16 -1.84 -14.72 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.70 6.64 -2.39 -0.02 1.68 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 30 H 0.05 1.84 7.83 -2.38 -0.02 1.82 16 31 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.07 3.73 5.52 -2.39 -0.01 3.72 16 33 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 34 H 0.06 2.33 6.64 -2.39 -0.02 2.32 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.42 13.59 7.86 -92.71 -0.73 12.86 16 37 H 0.17 3.14 7.74 -2.91 -0.02 3.12 16 38 H 0.22 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.23 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -66.86 333.79 2.31 -64.56 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.33 Total: 19.43 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 7.97 Total: 27.61 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -7.96 Total: -135.37 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -66.86 2.31 -64.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317545247.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.265 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds