Wall clock time and date at job start Tue Mar 31 2020 00:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74190 * 179.79455 * 3 2 1 5 5 C 1.29838 * 109.47585 * 0.41724 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85053 * 0.13351 * 6 2 1 8 8 C 1.53319 * 108.73001 * 162.90491 * 7 6 2 9 9 H 1.09003 * 109.44844 * 290.27137 * 8 7 6 10 10 C 1.50699 * 109.44911 * 170.32224 * 8 7 6 11 11 O 1.21282 * 120.00512 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99896 * 179.97438 * 10 8 7 13 13 C 1.46503 * 119.99819 * 179.97438 * 12 10 8 14 14 H 1.08994 * 109.47501 * 35.00567 * 13 12 10 15 15 C 1.52996 * 109.47350 * 274.99813 * 13 12 10 16 16 C 1.50703 * 109.46884 * 155.00300 * 13 12 10 17 17 H 1.08010 * 120.00119 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00059 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00225 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99842 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46970 * 90.00838 * 20 18 16 22 22 H 1.48500 * 109.47209 * 210.00231 * 20 18 16 23 23 H 1.48500 * 109.47474 * 330.00353 * 20 18 16 24 24 C 1.53137 * 109.58326 * 50.28915 * 8 7 6 25 25 C 1.50801 * 128.52707 * 179.85778 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 29 29 H 1.09006 * 109.58863 * 282.67675 * 7 6 2 30 30 H 1.09000 * 109.59336 * 43.12422 * 7 6 2 31 31 H 0.97005 * 120.00236 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47606 * 300.00480 * 15 13 12 33 33 H 1.09010 * 109.46866 * 60.00352 * 15 13 12 34 34 H 1.09000 * 109.47242 * 179.97438 * 15 13 12 35 35 H 0.97001 * 120.00530 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.50138 * 50.51131 * 24 8 7 37 37 H 1.09003 * 109.49786 * 170.58461 * 24 8 7 38 38 H 1.09004 * 109.72371 * 44.41567 * 25 5 4 39 39 H 1.08999 * 109.76865 * 283.76306 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0044 5 6 3.5816 -0.6156 -0.0016 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0162 8 6 3.1551 -3.3232 -0.4464 9 1 3.3624 -3.1417 -1.5010 10 6 2.8689 -4.7877 -0.2361 11 8 1.7983 -5.1381 0.2133 12 7 3.8028 -5.7083 -0.5473 13 6 3.5247 -7.1321 -0.3423 14 1 2.4723 -7.3297 -0.5456 15 6 3.8446 -7.5109 1.1050 16 6 4.3789 -7.9502 -1.2762 17 1 5.0611 -7.4588 -1.9543 18 6 4.2905 -9.3261 -1.2642 19 7 3.4603 -9.9245 -0.4383 20 14 5.3488 -10.3401 -2.4223 21 1 6.6369 -10.6653 -1.7588 22 1 4.6389 -11.5977 -2.7683 23 1 5.6119 -9.5635 -3.6604 24 6 4.3718 -2.9161 0.3896 25 6 4.8051 -1.4972 -0.0027 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 1.6241 -2.8012 0.9831 30 1 1.1203 -2.6568 -0.7208 31 1 4.6593 -5.4282 -0.9064 32 1 4.8971 -7.3133 1.3083 33 1 3.2267 -6.9191 1.7806 34 1 3.6373 -8.5701 1.2577 35 1 3.3983 -10.8925 -0.4295 36 1 4.1100 -2.9371 1.4475 37 1 5.1903 -3.6115 0.2035 38 1 5.5302 -1.1210 0.7190 39 1 5.2494 -1.5100 -0.9980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319408684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:13 Heat of formation + Delta-G solvation = 24.316410 kcal Electronic energy + Delta-G solvation = -21720.544659 eV Core-core repulsion = 18470.847596 eV Total energy + Delta-G solvation = -3249.697063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.38234 -39.63407 -36.81156 -35.00480 -34.24597 -32.59781 -31.63336 -30.57243 -28.90569 -27.45059 -25.41193 -24.96661 -23.33070 -21.65988 -21.13188 -19.97099 -19.36532 -17.65052 -16.75443 -16.56342 -15.76136 -15.46556 -15.11965 -14.86603 -14.48726 -14.22646 -13.98912 -13.63336 -13.29898 -13.21327 -12.80505 -12.56756 -12.35546 -12.18928 -11.82202 -11.61973 -11.36617 -11.22234 -11.18483 -11.02710 -10.86258 -10.44994 -10.38748 -10.34129 -10.16309 -9.29033 -9.17432 -9.03772 -8.67767 -8.12592 -6.23240 -4.33391 1.73483 2.33993 2.78317 3.03549 3.17243 3.24753 3.26177 3.70701 3.98200 4.20537 4.24530 4.35977 4.44754 4.57455 4.81780 4.91368 5.02840 5.09536 5.18043 5.23653 5.33345 5.39639 5.46845 5.52467 5.62699 5.73089 5.84310 5.93021 6.11758 6.68180 6.77612 6.81033 7.00179 7.24988 7.38274 7.55916 7.76519 8.01920 8.43831 8.61909 8.67688 8.87520 9.34486 10.82634 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035392 B = 0.003682 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.945569 B = 7603.499947 C = 7949.324440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.304 5.304 4 N -0.294 5.294 5 C 0.174 3.826 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.126 4.126 9 H 0.106 0.894 10 C 0.512 3.488 11 O -0.553 6.553 12 N -0.701 5.701 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.147 4.147 16 C -0.537 4.537 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.118 4.118 25 C -0.031 4.031 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.390 0.610 32 H 0.027 0.973 33 H 0.014 0.986 34 H 0.091 0.909 35 H 0.265 0.735 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 13.437 0.579 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.145 5.145 4 N -0.134 5.134 5 C -0.094 4.094 6 N -0.158 5.158 7 C 0.001 3.999 8 C -0.148 4.148 9 H 0.124 0.876 10 C 0.295 3.705 11 O -0.432 6.432 12 N -0.348 5.348 13 C 0.163 3.837 14 H 0.068 0.932 15 C -0.206 4.206 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.520 5.520 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.156 4.156 25 C -0.071 4.071 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.223 0.777 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.062 14.381 0.953 14.451 hybrid contribution 0.553 -1.867 -0.800 2.105 sum -0.509 12.513 0.153 12.525 Atomic orbital electron populations 1.20218 0.83760 1.04524 1.04096 1.24647 0.97109 0.82820 1.04477 1.74451 0.96155 1.23776 1.20107 1.74018 1.12319 1.08119 1.18950 1.24728 0.87210 0.92513 1.04929 1.46062 1.06945 1.08734 1.54015 1.21807 0.98030 0.74777 1.05240 1.21669 0.95688 0.94553 1.02849 0.87608 1.19848 0.85088 0.86425 0.79116 1.90690 1.24619 1.81744 1.46136 1.46531 1.16633 1.09043 1.62549 1.18805 0.98143 0.73443 0.93345 0.93243 1.22083 0.97797 1.03787 0.96905 1.21190 1.24003 0.91439 1.20919 0.92014 1.24882 0.95373 0.97686 0.95670 1.69888 1.35806 1.09918 1.36351 0.86438 0.80145 0.79603 0.80869 1.20473 1.21015 1.19819 1.21736 0.97285 0.96039 1.00579 1.20242 0.91106 0.91183 1.04548 0.89568 0.90258 0.88779 0.87878 0.87983 0.77691 0.95358 0.96672 0.89037 0.92456 0.90314 0.88662 0.87841 0.88404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.29 36.01 0.37 -0.19 16 2 C 0.18 2.26 8.07 -155.45 -1.25 1.00 16 3 N -0.30 -4.76 12.23 32.70 0.40 -4.36 16 4 N -0.29 -4.65 12.21 32.76 0.40 -4.25 16 5 C 0.17 2.27 7.75 -155.29 -1.20 1.07 16 6 N -0.47 -5.79 3.11 -110.86 -0.35 -6.14 16 7 C 0.12 1.44 5.48 -4.01 -0.02 1.42 16 8 C -0.13 -1.48 2.54 -91.54 -0.23 -1.71 16 9 H 0.11 1.12 8.12 -51.93 -0.42 0.69 16 10 C 0.51 8.59 7.12 -10.99 -0.08 8.51 16 11 O -0.55 -11.42 15.49 5.56 0.09 -11.33 16 12 N -0.70 -12.70 4.89 -54.93 -0.27 -12.97 16 13 C 0.26 6.20 2.56 -69.08 -0.18 6.02 16 14 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 15 C -0.15 -3.40 9.26 37.16 0.34 -3.06 16 16 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 17 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -23.81 11.32 55.43 0.63 -23.18 16 20 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.12 -1.16 5.22 -26.42 -0.14 -1.30 16 25 C -0.03 -0.29 6.33 -27.60 -0.17 -0.47 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.56 7.76 -51.93 -0.40 0.15 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.26 7.80 -51.93 -0.40 0.85 16 30 H 0.10 1.10 7.85 -51.93 -0.41 0.69 16 31 H 0.39 5.96 7.87 -40.82 -0.32 5.64 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 35 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 36 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.09 0.84 7.32 -51.93 -0.38 0.46 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 322.13 15.07 4.85 4.85 Total: -1.00 -31.89 322.13 -7.77 -39.66 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -5.55 Total: 3.73 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.96 Total: -0.74 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.81 Total: -50.90 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.89 -7.77 -39.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.978 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds