Wall clock time and date at job start Tue Mar 31 2020 00:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74190 * 179.79455 * 3 2 1 5 5 C 1.29838 * 109.47585 * 0.41724 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85053 * 0.13351 * 6 2 1 8 8 C 1.53319 * 108.73001 * 162.90491 * 7 6 2 9 9 H 1.09003 * 109.44844 * 290.27137 * 8 7 6 10 10 C 1.50699 * 109.44911 * 170.32224 * 8 7 6 11 11 O 1.21282 * 120.00512 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99896 * 179.97438 * 10 8 7 13 13 C 1.46503 * 119.99819 * 179.97438 * 12 10 8 14 14 H 1.08994 * 109.47501 * 35.00567 * 13 12 10 15 15 C 1.52996 * 109.47350 * 274.99813 * 13 12 10 16 16 C 1.50703 * 109.46884 * 155.00300 * 13 12 10 17 17 H 1.08010 * 120.00119 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00059 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00225 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99842 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46970 * 90.00838 * 20 18 16 22 22 H 1.48500 * 109.47209 * 210.00231 * 20 18 16 23 23 H 1.48500 * 109.47474 * 330.00353 * 20 18 16 24 24 C 1.53137 * 109.58326 * 50.28915 * 8 7 6 25 25 C 1.50801 * 128.52707 * 179.85778 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 29 29 H 1.09006 * 109.58863 * 282.67675 * 7 6 2 30 30 H 1.09000 * 109.59336 * 43.12422 * 7 6 2 31 31 H 0.97005 * 120.00236 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47606 * 300.00480 * 15 13 12 33 33 H 1.09010 * 109.46866 * 60.00352 * 15 13 12 34 34 H 1.09000 * 109.47242 * 179.97438 * 15 13 12 35 35 H 0.97001 * 120.00530 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.50138 * 50.51131 * 24 8 7 37 37 H 1.09003 * 109.49786 * 170.58461 * 24 8 7 38 38 H 1.09004 * 109.72371 * 44.41567 * 25 5 4 39 39 H 1.08999 * 109.76865 * 283.76306 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6812 0.0044 5 6 3.5816 -0.6156 -0.0016 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0162 8 6 3.1551 -3.3232 -0.4464 9 1 3.3624 -3.1417 -1.5010 10 6 2.8689 -4.7877 -0.2361 11 8 1.7983 -5.1381 0.2133 12 7 3.8028 -5.7083 -0.5473 13 6 3.5247 -7.1321 -0.3423 14 1 2.4723 -7.3297 -0.5456 15 6 3.8446 -7.5109 1.1050 16 6 4.3789 -7.9502 -1.2762 17 1 5.0611 -7.4588 -1.9543 18 6 4.2905 -9.3261 -1.2642 19 7 3.4603 -9.9245 -0.4383 20 14 5.3488 -10.3401 -2.4223 21 1 6.6369 -10.6653 -1.7588 22 1 4.6389 -11.5977 -2.7683 23 1 5.6119 -9.5635 -3.6604 24 6 4.3718 -2.9161 0.3896 25 6 4.8051 -1.4972 -0.0027 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 1.6241 -2.8012 0.9831 30 1 1.1203 -2.6568 -0.7208 31 1 4.6593 -5.4282 -0.9064 32 1 4.8971 -7.3133 1.3083 33 1 3.2267 -6.9191 1.7806 34 1 3.6373 -8.5701 1.2577 35 1 3.3983 -10.8925 -0.4295 36 1 4.1100 -2.9371 1.4475 37 1 5.1903 -3.6115 0.2035 38 1 5.5302 -1.1210 0.7190 39 1 5.2494 -1.5100 -0.9980 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319408684.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:13 Heat of formation + Delta-G solvation = 4.137376 kcal Electronic energy + Delta-G solvation = -21721.419688 eV Core-core repulsion = 18470.847596 eV Total energy + Delta-G solvation = -3250.572091 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.36695 -40.98366 -37.93467 -36.68840 -35.18712 -34.30587 -32.70603 -31.50119 -30.54939 -28.33164 -27.32745 -26.06594 -24.29828 -23.02565 -22.29533 -21.33256 -20.53278 -19.02119 -18.05834 -17.62137 -17.17370 -17.02386 -16.26991 -16.11833 -15.78719 -15.12808 -14.97324 -14.77477 -14.73262 -14.37580 -13.95488 -13.70121 -13.46103 -13.21096 -13.14260 -13.01846 -12.84091 -12.71064 -12.59706 -12.27898 -12.20861 -12.12899 -12.05304 -11.38831 -11.15100 -11.08049 -10.75550 -10.56696 -10.01840 -9.77075 -8.16793 -6.33699 0.79673 1.37740 1.46438 1.47905 1.57264 1.70488 1.76436 2.33201 2.54595 3.08609 3.14498 3.28215 3.46740 3.56771 3.62951 3.96725 4.01677 4.19495 4.25984 4.33725 4.57065 4.63434 4.66423 4.78474 4.83810 4.87000 4.94394 4.96012 5.03079 5.05306 5.11886 5.23038 5.45206 5.60694 5.70004 5.86533 5.90372 6.11749 6.74423 6.90625 7.33010 7.50592 7.66497 8.89124 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.035392 B = 0.003682 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.945569 B = 7603.499947 C = 7949.324440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.344 5.344 4 N -0.332 5.332 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.128 3.872 8 C -0.110 4.110 9 H 0.128 0.872 10 C 0.514 3.486 11 O -0.594 6.594 12 N -0.697 5.697 13 C 0.271 3.729 14 H 0.001 0.999 15 C -0.134 4.134 16 C -0.545 4.545 17 H 0.075 0.925 18 C 0.016 3.984 19 N -0.917 5.917 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.263 1.263 24 C -0.112 4.112 25 C -0.025 4.025 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.408 0.592 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.063 0.937 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 14.001 -0.391 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.184 5.184 4 N -0.171 5.171 5 C -0.095 4.095 6 N -0.159 5.159 7 C 0.005 3.995 8 C -0.131 4.131 9 H 0.146 0.854 10 C 0.300 3.700 11 O -0.476 6.476 12 N -0.345 5.345 13 C 0.167 3.833 14 H 0.019 0.981 15 C -0.193 4.193 16 C -0.583 4.583 17 H 0.094 0.906 18 C -0.184 4.184 19 N -0.555 5.555 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.216 1.216 23 H -0.188 1.188 24 C -0.150 4.150 25 C -0.064 4.064 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.129 0.871 31 H 0.244 0.756 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.319 14.999 -0.028 15.002 hybrid contribution 0.064 -2.022 -0.468 2.076 sum 0.383 12.977 -0.497 12.992 Atomic orbital electron populations 1.20428 0.81053 1.05778 1.05327 1.25374 0.98609 0.82290 1.02689 1.74372 0.96663 1.25306 1.22067 1.73930 1.12761 1.09673 1.20756 1.25386 0.88407 0.92285 1.03434 1.46130 1.06897 1.08793 1.54119 1.21771 0.98215 0.74350 1.05129 1.21546 0.96682 0.90303 1.04616 0.85403 1.20574 0.83856 0.88182 0.77434 1.90678 1.26347 1.82864 1.47668 1.46210 1.17930 1.07252 1.63122 1.18350 0.95214 0.76432 0.93274 0.98069 1.21901 0.98547 1.01961 0.96912 1.21559 1.23910 0.91824 1.21056 0.90644 1.25741 0.96519 0.99060 0.97103 1.70040 1.37463 1.10027 1.38018 0.85404 0.78427 0.77713 0.79147 1.19788 1.21594 1.18750 1.21732 0.96736 0.96790 0.99737 1.20409 0.89904 0.89721 1.06345 0.88245 0.88717 0.87777 0.88644 0.87129 0.75645 0.93892 0.96694 0.91783 0.92636 0.91000 0.86923 0.86255 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.29 71.24 0.73 -0.27 16 2 C 0.18 4.35 8.07 138.14 1.11 5.46 16 3 N -0.34 -10.61 12.23 -50.46 -0.62 -11.23 16 4 N -0.33 -10.23 12.21 -50.27 -0.61 -10.85 16 5 C 0.17 4.21 7.75 138.13 1.07 5.28 16 6 N -0.47 -10.83 3.11 -504.64 -1.57 -12.40 16 7 C 0.13 2.73 5.48 86.53 0.47 3.21 16 8 C -0.11 -2.31 2.54 -11.39 -0.03 -2.34 16 9 H 0.13 2.22 8.12 -2.39 -0.02 2.20 16 10 C 0.51 16.57 7.12 87.66 0.62 17.19 16 11 O -0.59 -24.57 15.49 -3.04 -0.05 -24.62 16 12 N -0.70 -24.25 4.89 -446.10 -2.18 -26.44 16 13 C 0.27 12.74 2.56 44.24 0.11 12.85 16 14 H 0.00 0.08 7.58 -2.39 -0.02 0.06 16 15 C -0.13 -6.25 9.26 71.98 0.67 -5.58 16 16 C -0.55 -26.67 8.73 25.60 0.22 -26.45 16 17 H 0.08 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.02 0.81 5.30 84.66 0.45 1.26 16 19 N -0.92 -50.25 11.32 21.45 0.24 -50.01 16 20 Si 0.97 39.85 29.54 68.60 2.03 41.88 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.11 -1.85 5.22 30.79 0.16 -1.69 16 25 C -0.02 -0.38 6.33 30.03 0.19 -0.19 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.13 7.76 -2.39 -0.02 1.11 16 28 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.10 2.22 7.80 -2.38 -0.02 2.20 16 30 H 0.11 2.18 7.85 -2.39 -0.02 2.16 16 31 H 0.41 11.33 7.87 -92.70 -0.73 10.60 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 35 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 37 H 0.11 1.54 7.32 -2.39 -0.02 1.52 16 38 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -70.66 322.13 3.36 -67.30 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.34 Total: 17.65 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.79 Total: 8.72 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.74 Total: -110.92 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.88 kcal Total: -70.66 3.36 -67.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408684.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.437 kcal (2) G-P(sol) polarization free energy of solvation -70.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds