Wall clock time and date at job start Tue Mar 31 2020 00:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74328 * 179.89415 * 3 2 1 5 5 C 1.29841 * 109.47320 * 0.43011 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85035 * 359.86786 * 6 2 1 8 8 C 1.53321 * 108.72868 * 197.06079 * 7 6 2 9 9 H 1.08997 * 109.45590 * 69.76415 * 8 7 6 10 10 C 1.50699 * 109.42767 * 189.70210 * 8 7 6 11 11 O 1.21287 * 120.00136 * 0.10222 * 10 8 7 12 12 N 1.34775 * 120.00005 * 180.10511 * 10 8 7 13 13 C 1.46506 * 120.00092 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46725 * 35.00326 * 13 12 10 15 15 C 1.52994 * 109.47176 * 274.99886 * 13 12 10 16 16 C 1.50707 * 109.46886 * 154.99616 * 13 12 10 17 17 H 1.08003 * 120.00064 * 0.02562 * 16 13 12 18 18 C 1.37868 * 119.99771 * 180.02562 * 16 13 12 19 19 N 1.31519 * 120.00095 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00047 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46937 * 60.00043 * 20 18 16 22 22 H 1.48504 * 109.47217 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47170 * 300.00146 * 20 18 16 24 24 C 1.53140 * 109.58602 * 309.72413 * 8 7 6 25 25 C 1.50792 * 128.51882 * 179.61112 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 29 29 H 1.09006 * 109.58678 * 316.82208 * 7 6 2 30 30 H 1.08999 * 109.59429 * 77.27308 * 7 6 2 31 31 H 0.96995 * 119.99999 * 359.97438 * 12 10 8 32 32 H 1.09001 * 109.47016 * 180.02562 * 15 13 12 33 33 H 1.08999 * 109.46930 * 300.00049 * 15 13 12 34 34 H 1.09002 * 109.47297 * 59.99856 * 15 13 12 35 35 H 0.97002 * 119.99769 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.49827 * 309.49268 * 24 8 7 37 37 H 1.08998 * 109.52684 * 189.40872 * 24 8 7 38 38 H 1.09001 * 109.73227 * 315.62992 * 25 5 4 39 39 H 1.09004 * 109.73641 * 76.31313 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0022 5 6 3.5816 -0.6156 -0.0054 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0109 8 6 3.1554 -3.3279 0.4094 9 1 3.3630 -3.1586 1.4660 10 6 2.8688 -4.7899 0.1824 11 8 1.7984 -5.1346 -0.2720 12 7 3.8019 -5.7143 0.4842 13 6 3.5231 -7.1356 0.2640 14 1 2.9066 -7.2510 -0.6275 15 6 2.7802 -7.7032 1.4750 16 6 4.8207 -7.8789 0.0768 17 1 5.7592 -7.3460 0.1183 18 6 4.8098 -9.2392 -0.1472 19 7 3.6669 -9.8881 -0.1982 20 14 6.4182 -10.1608 -0.3784 21 1 7.2575 -10.0040 0.8366 22 1 6.1356 -11.6015 -0.6018 23 1 7.1400 -9.6095 -1.5532 24 6 4.3718 -2.9114 -0.4225 25 6 4.8051 -1.4970 -0.0143 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 1.1209 -2.6645 0.6926 30 1 1.6233 -2.7902 -1.0132 31 1 4.6581 -5.4386 0.8472 32 1 2.5732 -8.7608 1.3113 33 1 3.3969 -7.5878 2.3663 34 1 1.8417 -7.1656 1.6103 35 1 3.6593 -10.8453 -0.3554 36 1 4.1094 -2.9205 -1.4804 37 1 5.1907 -3.6084 -0.2448 38 1 5.5301 -1.1128 -0.7319 39 1 5.2488 -1.5209 0.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319408694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:16 Heat of formation + Delta-G solvation = 24.309917 kcal Electronic energy + Delta-G solvation = -21717.026225 eV Core-core repulsion = 18467.328881 eV Total energy + Delta-G solvation = -3249.697344 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.37844 -39.63051 -36.80799 -35.00147 -34.23993 -32.59534 -31.63138 -30.56880 -28.90277 -27.44239 -25.40623 -24.96410 -23.33351 -21.66093 -21.13081 -19.92014 -19.39514 -17.65981 -16.75958 -16.54782 -15.67439 -15.47905 -15.21377 -14.81464 -14.46466 -14.23717 -13.95735 -13.67819 -13.27810 -13.20776 -12.81878 -12.55198 -12.33296 -12.18695 -11.84902 -11.59119 -11.36771 -11.20128 -11.17636 -11.04330 -10.86690 -10.45024 -10.38057 -10.33960 -10.15887 -9.28919 -9.18848 -9.03334 -8.66973 -8.12595 -6.22969 -4.33256 1.73581 2.34410 2.78639 3.03425 3.18589 3.24720 3.25119 3.71087 3.98891 4.20983 4.24402 4.36538 4.46626 4.57940 4.80494 4.92208 5.05642 5.09733 5.20522 5.22587 5.33484 5.40360 5.47330 5.52379 5.63787 5.74431 5.86413 5.92767 6.12346 6.68109 6.78010 6.80948 7.00141 7.24869 7.38261 7.55804 7.76338 8.01879 8.43823 8.61835 8.68034 8.87463 9.34572 10.82896 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003780 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.455054 B = 7405.483337 C = 8020.127731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.304 5.304 4 N -0.295 5.295 5 C 0.174 3.826 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.125 4.125 9 H 0.105 0.895 10 C 0.512 3.488 11 O -0.553 6.553 12 N -0.701 5.701 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.119 4.119 25 C -0.031 4.031 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.390 0.610 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 13.248 1.803 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.145 5.145 4 N -0.134 5.134 5 C -0.093 4.093 6 N -0.158 5.158 7 C 0.001 3.999 8 C -0.147 4.147 9 H 0.123 0.877 10 C 0.295 3.705 11 O -0.432 6.432 12 N -0.348 5.348 13 C 0.163 3.837 14 H 0.068 0.932 15 C -0.206 4.206 16 C -0.576 4.576 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.157 4.157 25 C -0.071 4.071 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.223 0.777 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.947 14.190 1.450 14.396 hybrid contribution 0.819 -1.816 0.143 1.997 sum -1.128 12.374 1.593 12.527 Atomic orbital electron populations 1.20218 0.83769 1.04614 1.04033 1.24647 0.97104 0.82820 1.04509 1.74448 0.96167 1.23785 1.20077 1.74021 1.12309 1.08125 1.18975 1.24735 0.87223 0.92514 1.04865 1.46062 1.06947 1.08724 1.54039 1.21808 0.98025 0.74765 1.05277 1.21666 0.95721 0.94509 1.02803 0.87679 1.19854 0.85151 0.86375 0.79112 1.90691 1.24518 1.81945 1.46042 1.46530 1.16525 1.09110 1.62592 1.18801 0.96288 0.73364 0.95242 0.93218 1.22088 0.96734 1.03972 0.97848 1.21148 0.91898 0.93140 1.51409 0.92041 1.24882 0.96748 0.97370 0.94593 1.69885 1.24881 1.09249 1.47970 0.86494 0.83078 0.78705 0.78764 1.20104 1.21081 1.20107 1.21744 0.97308 0.96032 1.00617 1.20248 0.91100 0.91265 1.04474 0.89629 0.90194 0.88757 0.88005 0.87864 0.77694 0.89017 0.95386 0.96668 0.92399 0.90253 0.88561 0.87819 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.29 36.01 0.37 -0.19 16 2 C 0.18 2.26 8.07 -155.45 -1.25 1.00 16 3 N -0.30 -4.77 12.23 32.70 0.40 -4.37 16 4 N -0.29 -4.67 12.21 32.76 0.40 -4.27 16 5 C 0.17 2.29 7.75 -155.30 -1.20 1.08 16 6 N -0.47 -5.81 3.11 -110.86 -0.35 -6.15 16 7 C 0.12 1.44 5.46 -4.01 -0.02 1.41 16 8 C -0.12 -1.47 2.54 -91.53 -0.23 -1.70 16 9 H 0.11 1.09 8.12 -51.93 -0.42 0.67 16 10 C 0.51 8.58 7.12 -10.99 -0.08 8.51 16 11 O -0.55 -11.42 15.49 5.55 0.09 -11.34 16 12 N -0.70 -12.70 4.89 -54.93 -0.27 -12.97 16 13 C 0.26 6.21 2.56 -69.08 -0.18 6.03 16 14 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 15 C -0.15 -3.44 9.26 37.15 0.34 -3.09 16 16 C -0.54 -13.34 8.73 -34.44 -0.30 -13.64 16 17 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -23.81 11.32 55.43 0.63 -23.19 16 20 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 22 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.12 -1.20 5.22 -26.42 -0.14 -1.34 16 25 C -0.03 -0.30 6.33 -27.60 -0.17 -0.47 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.27 7.79 -51.93 -0.40 0.86 16 31 H 0.39 5.96 7.88 -40.82 -0.32 5.64 16 32 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.10 0.89 7.33 -51.93 -0.38 0.51 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -31.83 322.70 -7.79 -39.62 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.58 Total: 3.86 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -2.96 Total: -0.75 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.81 Total: -50.95 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.83 -7.79 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.930 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds