Wall clock time and date at job start Tue Mar 31 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28915 * 109.74328 * 179.89415 * 3 2 1 5 5 C 1.29841 * 109.47320 * 0.43011 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46258 * 128.85035 * 359.86786 * 6 2 1 8 8 C 1.53321 * 108.72868 * 197.06079 * 7 6 2 9 9 H 1.08997 * 109.45590 * 69.76415 * 8 7 6 10 10 C 1.50699 * 109.42767 * 189.70210 * 8 7 6 11 11 O 1.21287 * 120.00136 * 0.10222 * 10 8 7 12 12 N 1.34775 * 120.00005 * 180.10511 * 10 8 7 13 13 C 1.46506 * 120.00092 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.46725 * 35.00326 * 13 12 10 15 15 C 1.52994 * 109.47176 * 274.99886 * 13 12 10 16 16 C 1.50707 * 109.46886 * 154.99616 * 13 12 10 17 17 H 1.08003 * 120.00064 * 0.02562 * 16 13 12 18 18 C 1.37868 * 119.99771 * 180.02562 * 16 13 12 19 19 N 1.31519 * 120.00095 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 120.00047 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46937 * 60.00043 * 20 18 16 22 22 H 1.48504 * 109.47217 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47170 * 300.00146 * 20 18 16 24 24 C 1.53140 * 109.58602 * 309.72413 * 8 7 6 25 25 C 1.50792 * 128.51882 * 179.61112 * 5 4 3 26 26 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 29 29 H 1.09006 * 109.58678 * 316.82208 * 7 6 2 30 30 H 1.08999 * 109.59429 * 77.27308 * 7 6 2 31 31 H 0.96995 * 119.99999 * 359.97438 * 12 10 8 32 32 H 1.09001 * 109.47016 * 180.02562 * 15 13 12 33 33 H 1.08999 * 109.46930 * 300.00049 * 15 13 12 34 34 H 1.09002 * 109.47297 * 59.99856 * 15 13 12 35 35 H 0.97002 * 119.99769 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.49827 * 309.49268 * 24 8 7 37 37 H 1.08998 * 109.52684 * 189.40872 * 24 8 7 38 38 H 1.09001 * 109.73227 * 315.62992 * 25 5 4 39 39 H 1.09004 * 109.73641 * 76.31313 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0022 5 6 3.5816 -0.6156 -0.0054 6 7 2.3075 -1.0833 -0.0059 7 6 1.9367 -2.4980 -0.0109 8 6 3.1554 -3.3279 0.4094 9 1 3.3630 -3.1586 1.4660 10 6 2.8688 -4.7899 0.1824 11 8 1.7984 -5.1346 -0.2720 12 7 3.8019 -5.7143 0.4842 13 6 3.5231 -7.1356 0.2640 14 1 2.9066 -7.2510 -0.6275 15 6 2.7802 -7.7032 1.4750 16 6 4.8207 -7.8789 0.0768 17 1 5.7592 -7.3460 0.1183 18 6 4.8098 -9.2392 -0.1472 19 7 3.6669 -9.8881 -0.1982 20 14 6.4182 -10.1608 -0.3784 21 1 7.2575 -10.0040 0.8366 22 1 6.1356 -11.6015 -0.6018 23 1 7.1400 -9.6095 -1.5532 24 6 4.3718 -2.9114 -0.4225 25 6 4.8051 -1.4970 -0.0143 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 -0.8872 -0.5187 28 1 -0.3633 0.8928 -0.5090 29 1 1.1209 -2.6645 0.6926 30 1 1.6233 -2.7902 -1.0132 31 1 4.6581 -5.4386 0.8472 32 1 2.5732 -8.7608 1.3113 33 1 3.3969 -7.5878 2.3663 34 1 1.8417 -7.1656 1.6103 35 1 3.6593 -10.8453 -0.3554 36 1 4.1094 -2.9205 -1.4804 37 1 5.1907 -3.6084 -0.2448 38 1 5.5301 -1.1128 -0.7319 39 1 5.2488 -1.5209 0.9810 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319408694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:15 Heat of formation + Delta-G solvation = 4.204090 kcal Electronic energy + Delta-G solvation = -21717.898080 eV Core-core repulsion = 18467.328881 eV Total energy + Delta-G solvation = -3250.569198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.36687 -40.98204 -37.93694 -36.68526 -35.18620 -34.30240 -32.70835 -31.49977 -30.54914 -28.32697 -27.32636 -26.06134 -24.31881 -23.02115 -22.29121 -21.31499 -20.54008 -19.03862 -18.05833 -17.60684 -17.16872 -16.96555 -16.34042 -16.15578 -15.68462 -15.11620 -15.04452 -14.85985 -14.65230 -14.34785 -13.93086 -13.68852 -13.49061 -13.23470 -13.12513 -12.97934 -12.86078 -12.74315 -12.58658 -12.27200 -12.20267 -12.14961 -12.04706 -11.38566 -11.15008 -11.09421 -10.75011 -10.55973 -10.01732 -9.77027 -8.16249 -6.33208 0.79453 1.37964 1.48021 1.48632 1.56283 1.70304 1.76393 2.33831 2.54638 3.08336 3.15165 3.28251 3.46822 3.57667 3.63054 3.94728 4.01563 4.19975 4.26867 4.35031 4.57907 4.62346 4.67440 4.77818 4.83388 4.86798 4.93681 4.96140 5.02202 5.05289 5.11538 5.23298 5.44908 5.60839 5.69901 5.86630 5.90180 6.11609 6.74667 6.90674 7.33328 7.50737 7.66492 8.89537 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003780 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.455054 B = 7405.483337 C = 8020.127731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.344 5.344 4 N -0.333 5.333 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.128 3.872 8 C -0.109 4.109 9 H 0.131 0.869 10 C 0.514 3.486 11 O -0.594 6.594 12 N -0.697 5.697 13 C 0.271 3.729 14 H 0.002 0.998 15 C -0.136 4.136 16 C -0.546 4.546 17 H 0.077 0.923 18 C 0.016 3.984 19 N -0.918 5.918 20 Si 0.968 3.032 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.270 1.270 24 C -0.113 4.113 25 C -0.024 4.024 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.408 0.592 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.015 0.985 35 H 0.264 0.736 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 13.861 2.560 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.184 5.184 4 N -0.171 5.171 5 C -0.095 4.095 6 N -0.159 5.159 7 C 0.005 3.995 8 C -0.131 4.131 9 H 0.148 0.852 10 C 0.299 3.701 11 O -0.476 6.476 12 N -0.345 5.345 13 C 0.168 3.832 14 H 0.020 0.980 15 C -0.195 4.195 16 C -0.584 4.584 17 H 0.095 0.905 18 C -0.184 4.184 19 N -0.556 5.556 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.195 1.195 24 C -0.151 4.151 25 C -0.063 4.063 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.244 0.756 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.465 14.857 2.221 15.029 hybrid contribution 0.295 -1.984 -0.116 2.009 sum -0.169 12.873 2.104 13.045 Atomic orbital electron populations 1.20428 0.81022 1.05690 1.05457 1.25381 0.98614 0.82272 1.02670 1.74370 0.96660 1.25317 1.22057 1.73933 1.12770 1.09662 1.20766 1.25375 0.88412 0.92286 1.03426 1.46130 1.06881 1.08799 1.54139 1.21774 0.98254 0.74320 1.05130 1.21545 0.96574 0.90269 1.04668 0.85163 1.20582 0.83929 0.88126 0.77430 1.90679 1.26289 1.83055 1.47540 1.46208 1.17826 1.07340 1.63135 1.18347 0.95225 0.76375 0.93294 0.98024 1.21914 0.97003 1.02230 0.98320 1.21535 0.92810 0.93465 1.50564 0.90497 1.25747 0.99745 0.98504 0.94438 1.70041 1.27049 1.09324 1.49191 0.85459 0.79245 0.76934 0.79078 1.18902 1.21631 1.19519 1.21733 0.96843 0.96841 0.99686 1.20405 0.89914 0.89731 1.06294 0.87912 0.88895 0.87879 0.86969 0.88785 0.75643 0.91716 0.94050 0.96628 0.92650 0.91219 0.87005 0.86366 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 10.29 71.24 0.73 -0.27 16 2 C 0.18 4.35 8.07 138.14 1.11 5.46 16 3 N -0.34 -10.62 12.23 -50.46 -0.62 -11.24 16 4 N -0.33 -10.27 12.21 -50.28 -0.61 -10.88 16 5 C 0.17 4.24 7.75 138.13 1.07 5.31 16 6 N -0.47 -10.85 3.11 -504.65 -1.57 -12.42 16 7 C 0.13 2.73 5.46 86.53 0.47 3.20 16 8 C -0.11 -2.29 2.54 -11.39 -0.03 -2.31 16 9 H 0.13 2.18 8.12 -2.39 -0.02 2.17 16 10 C 0.51 16.56 7.12 87.66 0.62 17.18 16 11 O -0.59 -24.58 15.49 -3.05 -0.05 -24.62 16 12 N -0.70 -24.25 4.89 -446.08 -2.18 -26.43 16 13 C 0.27 12.75 2.56 44.24 0.11 12.87 16 14 H 0.00 0.10 7.58 -2.39 -0.02 0.09 16 15 C -0.14 -6.35 9.26 71.98 0.67 -5.68 16 16 C -0.55 -26.60 8.73 25.60 0.22 -26.37 16 17 H 0.08 3.43 7.74 -2.91 -0.02 3.40 16 18 C 0.02 0.80 5.30 84.65 0.45 1.25 16 19 N -0.92 -50.32 11.32 21.44 0.24 -50.08 16 20 Si 0.97 39.76 29.54 68.60 2.03 41.78 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 C -0.11 -1.95 5.22 30.80 0.16 -1.79 16 25 C -0.02 -0.39 6.33 30.03 0.19 -0.20 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.14 8.04 -2.39 -0.02 1.12 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.09 2.22 7.79 -2.39 -0.02 2.20 16 31 H 0.41 11.32 7.88 -92.71 -0.73 10.59 16 32 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 37 H 0.11 1.64 7.33 -2.39 -0.02 1.62 16 38 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -70.57 322.70 3.36 -67.21 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.33 Total: 18.03 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 5.79 Total: 8.65 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.74 Total: -111.05 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.62 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.78 kcal Total: -70.57 3.36 -67.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.417 kcal (2) G-P(sol) polarization free energy of solvation -70.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds