Wall clock time and date at job start Tue Mar 31 2020 00:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30841 * 126.46268 * 2 1 4 4 N 1.28907 * 109.73730 * 179.91437 * 3 2 1 5 5 C 1.29836 * 109.48094 * 359.97438 * 4 3 2 6 6 N 1.34693 * 126.46649 * 179.68354 * 2 1 3 7 7 C 1.46266 * 128.84193 * 0.80243 * 6 2 1 8 8 C 1.53325 * 108.78243 * 162.48905 * 7 6 2 9 9 H 1.08996 * 109.45426 * 290.06773 * 8 7 6 10 10 C 1.50698 * 109.43263 * 170.12075 * 8 7 6 11 11 O 1.21280 * 120.00238 * 359.90384 * 10 8 7 12 12 N 1.34772 * 120.00110 * 179.89822 * 10 8 7 13 13 C 1.46499 * 120.00395 * 180.02562 * 12 10 8 14 14 H 1.09004 * 109.46811 * 325.00406 * 13 12 10 15 15 C 1.52997 * 109.47137 * 85.00496 * 13 12 10 16 16 C 1.50699 * 109.47488 * 205.00760 * 13 12 10 17 17 H 1.07999 * 119.99918 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00327 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99426 * 359.97438 * 18 16 13 20 20 Si 1.86793 * 120.00056 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47340 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47058 * 119.99949 * 20 18 16 23 23 H 1.48500 * 109.47187 * 240.00110 * 20 18 16 24 24 C 1.53139 * 109.57658 * 50.10011 * 8 7 6 25 25 C 1.50805 * 128.52587 * 180.10437 * 5 4 3 26 26 H 1.09002 * 109.47152 * 90.02559 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02659 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02640 * 1 2 3 29 29 H 1.09004 * 109.73021 * 42.60586 * 7 6 2 30 30 H 1.08995 * 109.40251 * 282.18563 * 7 6 2 31 31 H 0.97005 * 119.99917 * 0.02562 * 12 10 8 32 32 H 1.08998 * 109.47292 * 180.02562 * 15 13 12 33 33 H 1.09005 * 109.46811 * 300.00231 * 15 13 12 34 34 H 1.09001 * 109.47280 * 59.99706 * 15 13 12 35 35 H 0.97008 * 119.99424 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.49634 * 170.60921 * 24 8 7 37 37 H 1.09000 * 109.52286 * 50.53476 * 24 8 7 38 38 H 1.09001 * 109.72584 * 283.79085 * 25 5 4 39 39 H 1.09003 * 109.72770 * 44.41731 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 0.0018 5 6 3.5816 -0.6155 0.0036 6 7 2.3076 -1.0832 0.0060 7 6 1.9367 -2.4980 -0.0022 8 6 3.1555 -3.3254 -0.4275 9 1 3.3632 -3.1495 -1.4830 10 6 2.8689 -4.7887 -0.2095 11 8 1.7985 -5.1363 0.2425 12 7 3.8021 -5.7113 -0.5169 13 6 3.5234 -7.1339 -0.3055 14 1 2.9066 -7.2548 0.5851 15 6 2.7807 -7.6941 -1.5202 16 6 4.8208 -7.8783 -0.1227 17 1 5.7593 -7.3451 -0.1607 18 6 4.8100 -9.2402 0.0919 19 7 3.6672 -9.8895 0.1376 20 14 6.4183 -10.1630 0.3177 21 1 7.5532 -9.2099 0.2243 22 1 6.4306 -10.8173 1.6508 23 1 6.5497 -11.1953 -0.7417 24 6 4.3717 -2.9139 0.4072 25 6 4.8051 -1.4971 0.0082 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 0.8902 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 1.1208 -2.6605 -0.7064 30 1 1.6237 -2.7961 0.9984 31 1 4.6584 -5.4333 -0.8781 32 1 2.5729 -8.7524 -1.3627 33 1 1.8422 -7.1556 -1.6523 34 1 3.3974 -7.5730 -2.4107 35 1 3.6596 -10.8477 0.2890 36 1 5.1904 -3.6100 0.2247 37 1 4.1096 -2.9299 1.4651 38 1 5.2495 -1.5149 -0.9870 39 1 5.5300 -1.1166 0.7280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319408696.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:19 Heat of formation + Delta-G solvation = 24.252154 kcal Electronic energy + Delta-G solvation = -21717.249119 eV Core-core repulsion = 18467.549270 eV Total energy + Delta-G solvation = -3249.699849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.37960 -39.63194 -36.80867 -35.00343 -34.23978 -32.59733 -31.63249 -30.56897 -28.90387 -27.44233 -25.40923 -24.96552 -23.33411 -21.66166 -21.13274 -19.92003 -19.39468 -17.66119 -16.76189 -16.55052 -15.67625 -15.48670 -15.21132 -14.81463 -14.45966 -14.23716 -13.95549 -13.67970 -13.27526 -13.20772 -12.81962 -12.56054 -12.33258 -12.18925 -11.85749 -11.59253 -11.36860 -11.19858 -11.17589 -11.05127 -10.86943 -10.42598 -10.38138 -10.34684 -10.15847 -9.29146 -9.17254 -9.03286 -8.67834 -8.12645 -6.23538 -4.33496 1.73555 2.34411 2.78670 3.03393 3.16596 3.25019 3.26871 3.71055 3.98820 4.20978 4.24205 4.36491 4.46704 4.57860 4.80358 4.92180 5.05648 5.09464 5.20519 5.22586 5.33413 5.40311 5.47454 5.52353 5.63805 5.74414 5.86423 5.92804 6.12345 6.67962 6.77973 6.80860 7.00115 7.24814 7.38244 7.55948 7.76265 8.01697 8.43759 8.61990 8.68073 8.87505 9.34404 10.82427 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034760 B = 0.003780 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.332005 B = 7405.758211 C = 8020.444246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.304 5.304 4 N -0.295 5.295 5 C 0.174 3.826 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.125 4.125 9 H 0.105 0.895 10 C 0.512 3.488 11 O -0.553 6.553 12 N -0.700 5.700 13 C 0.264 3.736 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.536 4.536 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.882 5.882 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.119 4.119 25 C -0.031 4.031 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.390 0.610 32 H 0.091 0.909 33 H 0.014 0.986 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 13.283 -1.725 13.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.145 5.145 4 N -0.134 5.134 5 C -0.093 4.093 6 N -0.158 5.158 7 C 0.001 3.999 8 C -0.147 4.147 9 H 0.123 0.877 10 C 0.295 3.705 11 O -0.432 6.432 12 N -0.348 5.348 13 C 0.162 3.838 14 H 0.068 0.932 15 C -0.206 4.206 16 C -0.574 4.574 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.157 4.157 25 C -0.071 4.071 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.223 0.777 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.931 14.231 -1.366 14.426 hybrid contribution 0.800 -1.832 -0.146 2.004 sum -1.131 12.399 -1.513 12.542 Atomic orbital electron populations 1.20218 0.83768 1.04605 1.04041 1.24650 0.97104 0.82823 1.04516 1.74450 0.96165 1.23780 1.20076 1.74014 1.12316 1.08128 1.18976 1.24735 0.87223 0.92511 1.04870 1.46064 1.06949 1.08724 1.54027 1.21808 0.98026 0.74783 1.05265 1.21665 0.95718 0.94527 1.02785 0.87678 1.19849 0.85150 0.86394 0.79092 1.90689 1.24518 1.81871 1.46113 1.46530 1.16522 1.09072 1.62631 1.18810 0.96324 0.73351 0.95281 0.93214 1.22089 0.96734 1.03986 0.97834 1.21222 0.91945 0.92994 1.51287 0.91936 1.24889 0.96755 0.97402 0.94611 1.69906 1.24799 1.09040 1.48215 0.86382 0.83019 0.79746 0.77898 1.19680 1.20822 1.20822 1.21741 0.97311 0.96018 1.00630 1.20247 0.91094 0.91235 1.04510 0.89626 0.88764 0.90191 0.87983 0.87890 0.77689 0.89010 0.96675 0.95381 0.92520 0.88564 0.90250 0.88440 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.29 36.01 0.37 -0.19 16 2 C 0.18 2.25 8.07 -155.45 -1.25 1.00 16 3 N -0.30 -4.77 12.23 32.70 0.40 -4.37 16 4 N -0.29 -4.67 12.21 32.76 0.40 -4.27 16 5 C 0.17 2.29 7.75 -155.31 -1.20 1.08 16 6 N -0.47 -5.81 3.11 -110.85 -0.35 -6.15 16 7 C 0.12 1.44 5.46 -4.00 -0.02 1.41 16 8 C -0.12 -1.47 2.54 -91.53 -0.23 -1.70 16 9 H 0.11 1.09 8.12 -51.93 -0.42 0.67 16 10 C 0.51 8.58 7.12 -10.99 -0.08 8.50 16 11 O -0.55 -11.42 15.49 5.56 0.09 -11.33 16 12 N -0.70 -12.69 4.89 -54.94 -0.27 -12.96 16 13 C 0.26 6.19 2.56 -69.08 -0.18 6.01 16 14 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 15 C -0.15 -3.44 9.26 37.16 0.34 -3.09 16 16 C -0.54 -13.29 8.73 -34.44 -0.30 -13.59 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.88 -23.79 11.32 55.43 0.63 -23.16 16 20 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 C -0.12 -1.20 5.22 -26.43 -0.14 -1.34 16 25 C -0.03 -0.30 6.33 -27.60 -0.17 -0.47 16 26 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.26 7.79 -51.93 -0.40 0.86 16 31 H 0.39 5.96 7.88 -40.82 -0.32 5.64 16 32 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.10 0.89 7.32 -51.93 -0.38 0.51 16 37 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.85 322.69 -7.79 -39.65 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.58 Total: 3.80 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.96 Total: -0.75 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.81 Total: -50.92 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.85 -7.79 -39.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408696.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.901 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds