Wall clock time and date at job start Tue Mar 31 2020 00:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30834 * 126.46740 * 2 1 4 4 N 1.28909 * 109.74314 * 180.02562 * 3 2 1 5 5 C 1.29835 * 109.47987 * 0.03910 * 4 3 2 6 6 N 1.34696 * 126.46562 * 179.97438 * 2 1 3 7 7 C 1.46262 * 128.84615 * 359.83829 * 6 2 1 8 8 C 1.53313 * 108.73169 * 197.14184 * 7 6 2 9 9 H 1.09003 * 109.43313 * 69.72781 * 8 7 6 10 10 C 1.50701 * 109.45440 * 189.67527 * 8 7 6 11 11 O 1.21281 * 119.99785 * 0.10603 * 10 8 7 12 12 N 1.34780 * 119.99816 * 180.11101 * 10 8 7 13 13 C 1.46500 * 119.99272 * 179.97438 * 12 10 8 14 14 H 1.08996 * 109.47874 * 325.00124 * 13 12 10 15 15 C 1.52997 * 109.46996 * 85.00368 * 13 12 10 16 16 C 1.50703 * 109.46601 * 204.99781 * 13 12 10 17 17 H 1.07995 * 120.00203 * 265.55256 * 16 13 12 18 18 C 1.37881 * 119.99601 * 85.55481 * 16 13 12 19 19 N 1.31509 * 120.00224 * 353.28873 * 18 16 13 20 20 Si 1.86801 * 119.99628 * 173.29463 * 18 16 13 21 21 H 1.48497 * 109.47245 * 89.99865 * 20 18 16 22 22 H 1.48504 * 109.47190 * 329.99631 * 20 18 16 23 23 H 1.48501 * 109.46986 * 210.00203 * 20 18 16 24 24 C 1.53143 * 109.57839 * 309.70849 * 8 7 6 25 25 C 1.50801 * 128.52912 * 179.90913 * 5 4 3 26 26 H 1.08999 * 109.47086 * 89.97482 * 1 2 3 27 27 H 1.08999 * 109.46730 * 209.97398 * 1 2 3 28 28 H 1.08997 * 109.46607 * 329.97694 * 1 2 3 29 29 H 1.09005 * 109.59009 * 77.36407 * 7 6 2 30 30 H 1.09000 * 109.59279 * 316.91568 * 7 6 2 31 31 H 0.96991 * 119.99887 * 359.97438 * 12 10 8 32 32 H 1.08998 * 109.47138 * 175.76669 * 15 13 12 33 33 H 1.08993 * 109.47341 * 295.76707 * 15 13 12 34 34 H 1.09006 * 109.47444 * 55.76731 * 15 13 12 35 35 H 0.97001 * 120.00290 * 354.61422 * 19 18 16 36 36 H 1.09000 * 109.49817 * 189.38624 * 24 8 7 37 37 H 1.09000 * 109.50021 * 309.45111 * 24 8 7 38 38 H 1.08999 * 109.73054 * 76.19466 * 25 5 4 39 39 H 1.09004 * 109.72731 * 315.51984 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6156 -0.0017 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4981 0.0043 8 6 3.1549 -3.3252 0.4313 9 1 3.3616 -3.1482 1.4868 10 6 2.8689 -4.7888 0.2143 11 8 1.7989 -5.1369 -0.2384 12 7 3.8020 -5.7109 0.5235 13 6 3.5236 -7.1337 0.3131 14 1 2.4708 -7.3317 0.5142 15 6 3.8451 -7.5075 -1.1352 16 6 4.3763 -7.9555 1.2451 17 1 5.3242 -8.3466 0.9062 18 6 3.9462 -8.2081 2.5305 19 7 2.8591 -7.6253 2.9867 20 14 4.9077 -9.3781 3.6242 21 1 5.9331 -8.6171 4.3822 22 1 5.5743 -10.4056 2.7844 23 1 3.9802 -10.0417 4.5752 24 6 4.3720 -2.9143 -0.4026 25 6 4.8051 -1.4972 -0.0046 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3632 0.8898 0.5142 29 1 1.6245 -2.7968 -0.9964 30 1 1.1202 -2.6600 0.7080 31 1 4.6578 -5.4324 0.8852 32 1 3.7099 -8.5804 -1.2722 33 1 3.1768 -6.9685 -1.8066 34 1 4.8779 -7.2400 -1.3589 35 1 2.4036 -6.9591 2.4484 36 1 5.1905 -3.6103 -0.2189 37 1 4.1106 -2.9313 -1.4607 38 1 5.2486 -1.5145 0.9909 39 1 5.5304 -1.1177 -0.7245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319408697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:21 Heat of formation + Delta-G solvation = 15.471790 kcal Electronic energy + Delta-G solvation = -21969.298800 eV Core-core repulsion = 18719.218205 eV Total energy + Delta-G solvation = -3250.080594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.33831 -39.55558 -36.78760 -35.10431 -34.20976 -32.39695 -31.58433 -30.55209 -29.37710 -27.40845 -25.10708 -24.72445 -23.27950 -21.67515 -21.19059 -20.04368 -19.26417 -17.70155 -17.05023 -16.61637 -15.87012 -15.30755 -14.99406 -14.76343 -14.19399 -14.03117 -13.92052 -13.69217 -13.45810 -13.27762 -13.09755 -12.76009 -12.30685 -12.11731 -11.98760 -11.56048 -11.38584 -11.24283 -11.18140 -11.11644 -10.95832 -10.35403 -10.32151 -10.19078 -10.11646 -9.39596 -8.99663 -8.84392 -8.76157 -8.04152 -6.67668 -4.49944 1.77858 2.39296 2.82197 3.13877 3.26271 3.30658 3.47113 3.79263 4.03262 4.27148 4.29554 4.40122 4.50171 4.61099 4.85632 4.98188 5.07500 5.13527 5.24081 5.27785 5.44484 5.47059 5.52853 5.56121 5.67757 5.78014 5.88833 5.97990 6.15941 6.21326 6.39097 6.46497 6.82125 6.89832 7.08293 7.43526 7.72871 8.13513 8.41899 8.59065 8.71661 8.92850 9.30454 10.69060 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.004118 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.666164 B = 6797.044080 C = 6856.070155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.304 5.304 4 N -0.295 5.295 5 C 0.174 3.826 6 N -0.466 5.466 7 C 0.125 3.875 8 C -0.128 4.128 9 H 0.105 0.895 10 C 0.508 3.492 11 O -0.563 6.563 12 N -0.696 5.696 13 C 0.235 3.765 14 H 0.054 0.946 15 C -0.140 4.140 16 C -0.609 4.609 17 H 0.058 0.942 18 C 0.032 3.968 19 N -0.888 5.888 20 Si 1.070 2.930 21 H -0.286 1.286 22 H -0.285 1.285 23 H -0.282 1.282 24 C -0.116 4.116 25 C -0.032 4.032 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.388 0.612 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.039 0.961 35 H 0.277 0.723 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 9.406 -4.965 10.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.145 5.145 4 N -0.135 5.135 5 C -0.093 4.093 6 N -0.157 5.157 7 C 0.002 3.998 8 C -0.150 4.150 9 H 0.123 0.877 10 C 0.291 3.709 11 O -0.444 6.444 12 N -0.345 5.345 13 C 0.136 3.864 14 H 0.072 0.928 15 C -0.199 4.199 16 C -0.647 4.647 17 H 0.076 0.924 18 C -0.178 4.178 19 N -0.521 5.521 20 Si 0.898 3.102 21 H -0.212 1.212 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.154 4.154 25 C -0.071 4.071 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.222 0.778 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.370 9.803 -3.809 10.523 hybrid contribution 0.005 -0.402 -1.226 1.290 sum 0.375 9.401 -5.035 10.671 Atomic orbital electron populations 1.20213 0.83782 1.04545 1.04037 1.24645 0.97110 0.82845 1.04519 1.74440 0.96152 1.23782 1.20136 1.74006 1.12328 1.08116 1.19016 1.24715 0.87226 0.92498 1.04903 1.46076 1.06939 1.08777 1.53904 1.21805 0.98202 0.74708 1.05049 1.21720 0.95472 0.95001 1.02824 0.87710 1.20094 0.85416 0.86462 0.78924 1.90647 1.24816 1.81950 1.46939 1.47785 1.16638 1.08553 1.61481 1.18968 0.98484 0.76709 0.92244 0.92837 1.21992 0.99392 1.00495 0.97983 1.22158 1.08075 1.35153 0.99316 0.92392 1.26044 0.96413 0.98438 0.96858 1.70732 1.16623 1.24235 1.40473 0.83526 0.75380 0.75794 0.75549 1.21249 1.21118 1.20700 1.21705 0.97356 0.96015 1.00355 1.20240 0.91100 0.91228 1.04530 0.89619 0.90252 0.88772 0.88043 0.88044 0.77838 0.92727 0.94949 0.94158 0.91187 0.88805 0.90531 0.88402 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.29 36.01 0.37 -0.24 16 2 C 0.18 2.41 8.07 -155.45 -1.25 1.16 16 3 N -0.30 -5.01 12.23 32.70 0.40 -4.61 16 4 N -0.30 -4.91 12.21 32.76 0.40 -4.51 16 5 C 0.17 2.45 7.75 -155.30 -1.20 1.25 16 6 N -0.47 -6.29 3.11 -110.86 -0.35 -6.64 16 7 C 0.13 1.61 5.48 -4.01 -0.02 1.59 16 8 C -0.13 -1.71 2.54 -91.54 -0.23 -1.94 16 9 H 0.10 1.37 8.12 -51.93 -0.42 0.94 16 10 C 0.51 9.14 7.12 -10.98 -0.08 9.06 16 11 O -0.56 -12.05 15.49 5.56 0.09 -11.97 16 12 N -0.70 -13.40 4.84 -54.93 -0.27 -13.67 16 13 C 0.24 5.39 2.04 -69.08 -0.14 5.24 16 14 H 0.05 1.43 6.58 -51.93 -0.34 1.09 16 15 C -0.14 -2.82 9.46 37.16 0.35 -2.47 16 16 C -0.61 -15.06 8.50 -34.44 -0.29 -15.36 16 17 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 18 C 0.03 0.81 5.45 -17.82 -0.10 0.72 16 19 N -0.89 -24.65 13.56 55.43 0.75 -23.90 16 20 Si 1.07 22.70 29.91 -169.99 -5.08 17.62 16 21 H -0.29 -5.83 7.11 56.52 0.40 -5.42 16 22 H -0.29 -5.79 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.12 -1.26 5.22 -26.43 -0.14 -1.40 16 25 C -0.03 -0.33 6.33 -27.61 -0.17 -0.50 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.64 7.75 -51.93 -0.40 0.24 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.33 7.79 -51.93 -0.40 0.93 16 30 H 0.10 1.27 7.84 -51.93 -0.41 0.86 16 31 H 0.39 6.76 7.93 -40.82 -0.32 6.43 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.28 7.80 6.93 -40.82 -0.28 7.52 16 36 H 0.09 0.93 7.32 -51.93 -0.38 0.55 16 37 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -31.79 324.11 -7.64 -39.42 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.55 Total: 6.27 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -2.91 Total: -2.91 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.94 Total: -53.33 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.08 Total: 17.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.79 -7.64 -39.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.896 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds