Wall clock time and date at job start Tue Mar 31 2020 00:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30834 * 126.46740 * 2 1 4 4 N 1.28909 * 109.74314 * 180.02562 * 3 2 1 5 5 C 1.29835 * 109.47987 * 0.03910 * 4 3 2 6 6 N 1.34696 * 126.46562 * 179.97438 * 2 1 3 7 7 C 1.46262 * 128.84615 * 359.83829 * 6 2 1 8 8 C 1.53313 * 108.73169 * 197.14184 * 7 6 2 9 9 H 1.09003 * 109.43313 * 69.72781 * 8 7 6 10 10 C 1.50701 * 109.45440 * 189.67527 * 8 7 6 11 11 O 1.21281 * 119.99785 * 0.10603 * 10 8 7 12 12 N 1.34780 * 119.99816 * 180.11101 * 10 8 7 13 13 C 1.46500 * 119.99272 * 179.97438 * 12 10 8 14 14 H 1.08996 * 109.47874 * 325.00124 * 13 12 10 15 15 C 1.52997 * 109.46996 * 85.00368 * 13 12 10 16 16 C 1.50703 * 109.46601 * 204.99781 * 13 12 10 17 17 H 1.07995 * 120.00203 * 265.55256 * 16 13 12 18 18 C 1.37881 * 119.99601 * 85.55481 * 16 13 12 19 19 N 1.31509 * 120.00224 * 353.28873 * 18 16 13 20 20 Si 1.86801 * 119.99628 * 173.29463 * 18 16 13 21 21 H 1.48497 * 109.47245 * 89.99865 * 20 18 16 22 22 H 1.48504 * 109.47190 * 329.99631 * 20 18 16 23 23 H 1.48501 * 109.46986 * 210.00203 * 20 18 16 24 24 C 1.53143 * 109.57839 * 309.70849 * 8 7 6 25 25 C 1.50801 * 128.52912 * 179.90913 * 5 4 3 26 26 H 1.08999 * 109.47086 * 89.97482 * 1 2 3 27 27 H 1.08999 * 109.46730 * 209.97398 * 1 2 3 28 28 H 1.08997 * 109.46607 * 329.97694 * 1 2 3 29 29 H 1.09005 * 109.59009 * 77.36407 * 7 6 2 30 30 H 1.09000 * 109.59279 * 316.91568 * 7 6 2 31 31 H 0.96991 * 119.99887 * 359.97438 * 12 10 8 32 32 H 1.08998 * 109.47138 * 175.76669 * 15 13 12 33 33 H 1.08993 * 109.47341 * 295.76707 * 15 13 12 34 34 H 1.09006 * 109.47444 * 55.76731 * 15 13 12 35 35 H 0.97001 * 120.00290 * 354.61422 * 19 18 16 36 36 H 1.09000 * 109.49817 * 189.38624 * 24 8 7 37 37 H 1.09000 * 109.50021 * 309.45111 * 24 8 7 38 38 H 1.08999 * 109.73054 * 76.19466 * 25 5 4 39 39 H 1.09004 * 109.72731 * 315.51984 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0522 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6156 -0.0017 6 7 2.3076 -1.0832 0.0005 7 6 1.9367 -2.4981 0.0043 8 6 3.1549 -3.3252 0.4313 9 1 3.3616 -3.1482 1.4868 10 6 2.8689 -4.7888 0.2143 11 8 1.7989 -5.1369 -0.2384 12 7 3.8020 -5.7109 0.5235 13 6 3.5236 -7.1337 0.3131 14 1 2.4708 -7.3317 0.5142 15 6 3.8451 -7.5075 -1.1352 16 6 4.3763 -7.9555 1.2451 17 1 5.3242 -8.3466 0.9062 18 6 3.9462 -8.2081 2.5305 19 7 2.8591 -7.6253 2.9867 20 14 4.9077 -9.3781 3.6242 21 1 5.9331 -8.6171 4.3822 22 1 5.5743 -10.4056 2.7844 23 1 3.9802 -10.0417 4.5752 24 6 4.3720 -2.9143 -0.4026 25 6 4.8051 -1.4972 -0.0046 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3633 -0.8902 0.5134 28 1 -0.3632 0.8898 0.5142 29 1 1.6245 -2.7968 -0.9964 30 1 1.1202 -2.6600 0.7080 31 1 4.6578 -5.4324 0.8852 32 1 3.7099 -8.5804 -1.2722 33 1 3.1768 -6.9685 -1.8066 34 1 4.8779 -7.2400 -1.3589 35 1 2.4036 -6.9591 2.4484 36 1 5.1905 -3.6103 -0.2189 37 1 4.1106 -2.9313 -1.4607 38 1 5.2486 -1.5145 0.9909 39 1 5.5304 -1.1177 -0.7245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319408697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:21 Heat of formation + Delta-G solvation = -4.456196 kcal Electronic energy + Delta-G solvation = -21970.162942 eV Core-core repulsion = 18719.218205 eV Total energy + Delta-G solvation = -3250.944737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.41152 -41.00289 -38.01349 -36.81112 -35.22741 -34.13299 -32.78003 -31.60473 -30.89422 -28.37429 -26.78644 -26.09618 -24.33823 -23.16246 -22.37160 -21.40336 -20.53445 -19.34148 -18.41952 -17.67535 -17.17821 -16.72998 -16.29137 -15.90444 -15.63083 -15.40918 -15.17008 -14.99995 -14.76502 -14.65952 -13.99165 -13.75209 -13.51208 -13.27128 -13.19325 -13.00057 -12.89465 -12.67477 -12.61900 -12.28427 -12.11250 -12.04607 -11.89492 -11.43963 -11.20382 -11.02182 -10.72062 -10.56443 -10.05862 -9.71357 -8.69026 -6.51342 0.75161 1.33495 1.58412 1.63424 1.70046 1.72007 1.82771 2.40341 2.55761 3.03744 3.18281 3.24343 3.45904 3.51597 3.61525 3.92285 3.96845 4.15261 4.21036 4.27843 4.51351 4.51419 4.59207 4.61273 4.74107 4.74561 4.79339 4.82467 4.91226 4.98119 4.99085 5.17750 5.20224 5.32017 5.71939 5.81670 5.95028 6.14851 6.46726 6.91580 7.36867 7.43431 7.61917 8.67222 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.004118 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.666164 B = 6797.044080 C = 6856.070155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.342 5.342 4 N -0.331 5.331 5 C 0.173 3.827 6 N -0.469 5.469 7 C 0.131 3.869 8 C -0.115 4.115 9 H 0.113 0.887 10 C 0.509 3.491 11 O -0.598 6.598 12 N -0.695 5.695 13 C 0.238 3.762 14 H 0.007 0.993 15 C -0.130 4.130 16 C -0.612 4.612 17 H 0.063 0.937 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 1.116 2.884 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.291 1.291 24 C -0.107 4.107 25 C -0.025 4.025 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.400 0.600 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.261 0.739 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 9.443 -5.175 10.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.182 5.182 4 N -0.169 5.169 5 C -0.096 4.096 6 N -0.160 5.160 7 C 0.008 3.992 8 C -0.136 4.136 9 H 0.131 0.869 10 C 0.294 3.706 11 O -0.481 6.481 12 N -0.344 5.344 13 C 0.136 3.864 14 H 0.025 0.975 15 C -0.189 4.189 16 C -0.650 4.650 17 H 0.081 0.919 18 C -0.216 4.216 19 N -0.556 5.556 20 Si 0.938 3.062 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.217 1.217 24 C -0.146 4.146 25 C -0.064 4.064 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.236 0.764 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.128 0.872 37 H 0.095 0.905 38 H 0.133 0.867 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.839 9.879 -4.038 10.829 hybrid contribution -0.493 -0.400 -1.237 1.390 sum 1.345 9.479 -5.274 10.930 Atomic orbital electron populations 1.20429 0.81010 1.05703 1.05424 1.25394 0.98645 0.82264 1.02705 1.74365 0.96617 1.25207 1.22023 1.73922 1.12776 1.09546 1.20705 1.25358 0.88365 0.92308 1.03520 1.46141 1.06972 1.08779 1.54102 1.21726 0.98016 0.74398 1.05019 1.21575 0.96947 0.91207 1.03918 0.86858 1.20659 0.84215 0.88154 0.77552 1.90634 1.26190 1.82972 1.48314 1.47235 1.17570 1.07534 1.62020 1.18697 0.95563 0.78480 0.93624 0.97476 1.21872 1.00541 1.00427 0.96032 1.22405 1.08087 1.35187 0.99349 0.91862 1.27315 0.96380 0.99251 0.98681 1.70861 1.18388 1.25629 1.40765 0.82937 0.74461 0.74559 0.74247 1.19521 1.19351 1.21749 1.21691 0.96466 0.96683 0.99745 1.20403 0.90029 0.89859 1.06159 0.88008 0.88983 0.87687 0.88272 0.87760 0.76443 0.92858 0.94894 0.92135 0.92879 0.87224 0.90541 0.86715 0.85878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.29 71.24 0.73 -0.39 16 2 C 0.18 4.69 8.07 138.14 1.11 5.80 16 3 N -0.34 -11.12 12.23 -50.46 -0.62 -11.74 16 4 N -0.33 -10.77 12.21 -50.28 -0.61 -11.38 16 5 C 0.17 4.59 7.75 138.14 1.07 5.66 16 6 N -0.47 -12.01 3.11 -504.65 -1.57 -13.58 16 7 C 0.13 3.20 5.48 86.53 0.47 3.67 16 8 C -0.11 -2.86 2.54 -11.39 -0.03 -2.89 16 9 H 0.11 2.71 8.12 -2.39 -0.02 2.69 16 10 C 0.51 17.94 7.12 87.66 0.62 18.57 16 11 O -0.60 -25.77 15.49 -3.03 -0.05 -25.82 16 12 N -0.69 -26.17 4.84 -446.09 -2.16 -28.32 16 13 C 0.24 10.87 2.04 44.25 0.09 10.96 16 14 H 0.01 0.40 6.58 -2.39 -0.02 0.38 16 15 C -0.13 -5.10 9.46 71.98 0.68 -4.42 16 16 C -0.61 -29.86 8.50 25.60 0.22 -29.64 16 17 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 18 C -0.01 -0.71 5.45 84.66 0.46 -0.25 16 19 N -0.92 -51.95 13.56 21.45 0.29 -51.66 16 20 Si 1.12 44.84 29.91 68.60 2.05 46.89 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 24 C -0.11 -2.05 5.22 30.79 0.16 -1.89 16 25 C -0.03 -0.46 6.33 30.03 0.19 -0.27 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.32 7.75 -2.39 -0.02 1.30 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 2.50 7.79 -2.38 -0.02 2.48 16 30 H 0.10 2.49 7.84 -2.39 -0.02 2.47 16 31 H 0.40 13.24 7.93 -92.72 -0.74 12.51 16 32 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.26 15.16 6.93 -92.71 -0.64 14.52 16 36 H 0.11 1.79 7.32 -2.39 -0.02 1.78 16 37 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.12 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -69.98 324.11 3.58 -66.40 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.46 Total: 24.29 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.79 Total: 4.91 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -4.67 Total: -116.67 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.05 Total: 46.89 kcal Total: -69.98 3.58 -66.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319408697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.940 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds