Wall clock time and date at job start Tue Mar 31 2020 00:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21520 * 119.99912 * 0.02562 * 8 7 6 10 10 C 1.48150 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.39438 * 120.09857 * 179.97438 * 10 8 7 12 12 N 1.32084 * 119.87656 * 180.02562 * 11 10 8 13 13 C 1.32132 * 120.06859 * 0.02562 * 12 11 10 14 14 C 1.38726 * 120.19736 * 359.97438 * 13 12 11 15 15 N 1.31802 * 120.12846 * 359.71891 * 14 13 12 16 16 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 26 26 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 27 27 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 29 29 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 31 31 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 32 32 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 35 35 H 1.08004 * 120.06167 * 359.97438 * 11 10 8 36 36 H 1.07995 * 119.90220 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.94256 * 180.02562 * 14 13 12 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1731 -1.1252 1.8257 10 6 5.8772 -2.4570 3.7259 11 6 7.2477 -2.6049 3.9362 12 7 7.6832 -3.3210 4.9571 13 6 6.8218 -3.8965 5.7773 14 6 5.4577 -3.7513 5.5708 15 7 5.0147 -3.0335 4.5581 16 7 1.5517 -2.1025 1.2491 17 6 0.3102 -2.3897 1.7504 18 1 -0.3092 -1.5980 2.1454 19 6 -0.1524 -3.6985 1.7509 20 7 0.6002 -4.6626 1.2645 21 14 -1.8463 -4.0903 2.4340 22 1 -2.1036 -5.5479 2.3138 23 1 -1.9075 -3.6930 3.8636 24 1 -2.8744 -3.3413 1.6677 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9331 -1.1563 0.3175 33 1 3.9337 0.3018 1.3383 34 1 3.4281 -1.9369 2.9842 35 1 7.9519 -2.1355 3.2651 36 1 7.1808 -4.4811 6.6114 37 1 4.7574 -4.2232 6.2440 38 1 2.1078 -2.8135 0.8941 39 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319897132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:45 Heat of formation + Delta-G solvation = 16.494857 kcal Electronic energy + Delta-G solvation = -21610.108009 eV Core-core repulsion = 18360.071778 eV Total energy + Delta-G solvation = -3250.036231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31102 -39.23950 -37.35197 -34.69714 -33.83074 -33.43503 -31.85463 -30.24264 -28.10428 -26.20612 -25.38970 -24.62873 -23.47168 -22.10414 -20.64511 -19.49187 -18.14335 -17.70523 -17.37015 -16.90011 -15.63543 -15.55088 -15.20967 -14.85523 -14.46310 -14.18321 -13.77603 -13.66365 -13.47368 -13.13460 -12.88394 -12.27175 -11.99217 -11.82772 -11.67166 -11.44468 -11.23422 -10.95581 -10.79647 -10.49351 -10.21780 -10.15974 -10.08385 -9.89777 -9.62581 -9.25143 -9.20686 -8.92408 -8.76529 -7.09754 -6.12098 -3.13605 0.26260 0.88937 2.75264 3.18166 3.49109 3.51531 3.69136 3.70298 3.92183 4.00640 4.29127 4.62633 4.74160 4.98115 5.09431 5.24328 5.29039 5.34190 5.49093 5.56936 5.70985 5.78644 5.89032 6.05712 6.10600 6.15467 6.29317 6.35645 6.45325 6.54945 6.57255 6.77729 6.95961 6.99119 7.26014 7.43568 7.78086 7.78989 8.30833 8.71521 9.16005 10.03003 10.17485 11.34872 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.005612 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.845986 B = 4988.151758 C = 6670.364261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.109 3.891 7 N -0.688 5.688 8 C 0.568 3.432 9 O -0.542 6.542 10 C 0.035 3.965 11 C 0.104 3.896 12 N -0.443 5.443 13 C 0.066 3.934 14 C 0.053 3.947 15 N -0.404 5.404 16 N -0.732 5.732 17 C -0.326 4.326 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.941 5.941 21 Si 1.075 2.925 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.041 0.959 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.421 0.579 35 H 0.182 0.818 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.368 0.632 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 5.701 6.510 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.207 4.207 4 C 0.065 3.935 5 H 0.073 0.927 6 C -0.015 4.015 7 N -0.339 5.339 8 C 0.351 3.649 9 O -0.420 6.420 10 C -0.106 4.106 11 C -0.056 4.056 12 N -0.157 5.157 13 C -0.095 4.095 14 C -0.109 4.109 15 N -0.121 5.121 16 N -0.374 5.374 17 C -0.457 4.457 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.586 5.586 21 Si 0.907 3.093 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.259 0.741 35 H 0.199 0.801 36 H 0.192 0.808 37 H 0.195 0.805 38 H 0.201 0.799 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.045 5.035 6.318 11.401 hybrid contribution 0.852 0.787 -0.094 1.164 sum 8.897 5.823 6.224 12.321 Atomic orbital electron populations 1.21809 0.94735 1.04004 0.98997 1.21716 0.97115 0.94441 0.99757 1.21943 1.00450 0.97260 1.01053 1.20486 0.88886 0.87869 0.96271 0.92655 1.21890 0.96068 0.95033 0.88544 1.45906 1.06365 1.51172 1.30451 1.17658 0.83286 0.80497 0.83480 1.90770 1.55770 1.49002 1.46478 1.22312 0.92428 0.99060 0.96781 1.23809 0.94384 0.93208 0.94185 1.68606 1.38270 1.05994 1.02807 1.24091 0.91324 0.96022 0.98049 1.23927 0.95824 0.95780 0.95376 1.68462 1.38097 1.03871 1.01678 1.42455 1.18353 1.01944 1.74669 1.19967 0.93552 0.95204 1.36996 0.91473 1.25683 1.05654 0.91475 1.01202 1.70881 1.11372 1.33286 1.43063 0.83299 0.74550 0.76012 0.75472 1.21186 1.22323 1.22298 0.94028 0.94982 0.89443 0.92028 0.93049 0.93446 0.93121 0.91578 0.91050 0.74099 0.80128 0.80763 0.80484 0.79899 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.26 37.16 0.31 -2.20 16 2 C -0.11 -1.85 2.69 -90.62 -0.24 -2.09 16 3 C -0.15 -2.08 8.84 37.15 0.33 -1.75 16 4 C 0.18 3.24 2.18 -67.93 -0.15 3.10 16 5 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 6 C 0.11 1.84 4.73 -4.04 -0.02 1.82 16 7 N -0.69 -11.95 5.38 -61.15 -0.33 -12.28 16 8 C 0.57 9.70 7.81 -12.19 -0.10 9.61 16 9 O -0.54 -10.09 16.35 5.35 0.09 -10.00 16 10 C 0.04 0.54 6.75 -82.84 -0.56 -0.02 16 11 C 0.10 1.38 10.77 -17.00 -0.18 1.20 16 12 N -0.44 -5.42 10.49 -12.71 -0.13 -5.56 16 13 C 0.07 0.65 11.23 -17.24 -0.19 0.45 16 14 C 0.05 0.59 11.22 -17.38 -0.20 0.39 16 15 N -0.40 -5.95 9.71 -9.61 -0.09 -6.05 16 16 N -0.73 -16.60 4.44 -53.43 -0.24 -16.84 16 17 C -0.33 -8.34 7.57 -15.06 -0.11 -8.45 16 18 H 0.07 1.70 7.39 -52.48 -0.39 1.31 16 19 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 20 N -0.94 -27.85 13.70 55.49 0.76 -27.09 16 21 Si 1.08 24.91 29.92 -169.99 -5.09 19.83 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.30 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.67 6.55 -51.93 -0.34 0.33 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.12 6.71 -51.93 -0.35 0.77 16 34 H 0.42 7.79 7.49 -40.82 -0.31 7.49 16 35 H 0.18 2.18 7.65 -52.48 -0.40 1.78 16 36 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.37 8.95 6.63 -40.82 -0.27 8.68 16 39 H 0.25 7.51 6.77 -40.82 -0.28 7.23 16 LS Contribution 327.11 15.07 4.93 4.93 Total: -1.00 -30.88 327.11 -6.55 -37.44 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -5.24 Total: 14.81 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.21 Total: 0.81 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.03 Total: -67.82 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.88 -6.55 -37.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319897132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.932 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds