Wall clock time and date at job start Tue Mar 31 2020 00:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21520 * 119.99912 * 0.02562 * 8 7 6 10 10 C 1.48150 * 119.99989 * 180.02562 * 8 7 6 11 11 C 1.39438 * 120.09857 * 179.97438 * 10 8 7 12 12 N 1.32084 * 119.87656 * 180.02562 * 11 10 8 13 13 C 1.32132 * 120.06859 * 0.02562 * 12 11 10 14 14 C 1.38726 * 120.19736 * 359.97438 * 13 12 11 15 15 N 1.31802 * 120.12846 * 359.71891 * 14 13 12 16 16 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 26 26 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 27 27 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 29 29 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 31 31 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 32 32 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 35 35 H 1.08004 * 120.06167 * 359.97438 * 11 10 8 36 36 H 1.07995 * 119.90220 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.94256 * 180.02562 * 14 13 12 38 38 H 0.97004 * 119.99747 * 95.00774 * 16 4 2 39 39 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1731 -1.1252 1.8257 10 6 5.8772 -2.4570 3.7259 11 6 7.2477 -2.6049 3.9362 12 7 7.6832 -3.3210 4.9571 13 6 6.8218 -3.8965 5.7773 14 6 5.4577 -3.7513 5.5708 15 7 5.0147 -3.0335 4.5581 16 7 1.5517 -2.1025 1.2491 17 6 0.3102 -2.3897 1.7504 18 1 -0.3092 -1.5980 2.1454 19 6 -0.1524 -3.6985 1.7509 20 7 0.6002 -4.6626 1.2645 21 14 -1.8463 -4.0903 2.4340 22 1 -2.1036 -5.5479 2.3138 23 1 -1.9075 -3.6930 3.8636 24 1 -2.8744 -3.3413 1.6677 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9331 -1.1563 0.3175 33 1 3.9337 0.3018 1.3383 34 1 3.4281 -1.9369 2.9842 35 1 7.9519 -2.1355 3.2651 36 1 7.1808 -4.4811 6.6114 37 1 4.7574 -4.2232 6.2440 38 1 2.1078 -2.8135 0.8941 39 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319897132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:44 Heat of formation + Delta-G solvation = -6.264352 kcal Electronic energy + Delta-G solvation = -21611.094922 eV Core-core repulsion = 18360.071778 eV Total energy + Delta-G solvation = -3251.023144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31758 -40.55710 -38.87633 -35.82590 -35.32723 -35.02994 -32.85321 -31.98035 -29.62775 -27.52105 -26.57860 -25.70548 -25.21058 -23.57035 -21.96388 -20.91061 -19.58240 -19.12388 -18.70786 -17.82169 -17.00148 -16.86031 -16.60423 -16.22932 -15.85091 -15.50173 -15.39191 -15.10589 -14.93054 -14.43521 -13.90176 -13.67593 -13.55537 -12.90829 -12.84188 -12.80797 -12.67233 -12.50576 -12.43590 -11.99884 -11.92214 -11.60819 -11.52201 -11.49657 -11.16601 -10.81759 -10.60587 -10.23305 -10.14189 -9.05129 -8.26140 -5.21131 -0.72366 -0.05793 1.55664 1.61706 1.70214 1.85622 1.94432 2.67725 2.75651 2.89382 3.14205 3.34389 3.49200 3.68120 3.74252 3.80221 4.05075 4.21219 4.22064 4.28124 4.34755 4.48189 4.55391 4.63516 4.85662 4.89978 4.97606 5.09485 5.18265 5.20647 5.24013 5.39053 5.56439 5.69733 5.73777 6.01244 6.31081 6.58259 6.59798 6.94889 7.15189 8.05116 8.17990 9.24096 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013935 B = 0.005612 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.845986 B = 4988.151758 C = 6670.364261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.177 3.823 5 H 0.053 0.947 6 C 0.117 3.883 7 N -0.693 5.693 8 C 0.567 3.433 9 O -0.564 6.564 10 C 0.007 3.993 11 C 0.104 3.896 12 N -0.455 5.455 13 C 0.089 3.911 14 C 0.053 3.947 15 N -0.435 5.435 16 N -0.739 5.739 17 C -0.302 4.302 18 H 0.071 0.929 19 C -0.104 4.104 20 N -0.979 5.979 21 Si 1.119 2.881 22 H -0.301 1.301 23 H -0.279 1.279 24 H -0.282 1.282 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.415 0.585 35 H 0.185 0.815 36 H 0.224 0.776 37 H 0.211 0.789 38 H 0.357 0.643 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 6.599 8.067 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 C -0.198 4.198 4 C 0.068 3.932 5 H 0.071 0.929 6 C -0.007 4.007 7 N -0.342 5.342 8 C 0.352 3.648 9 O -0.444 6.444 10 C -0.132 4.132 11 C -0.054 4.054 12 N -0.170 5.170 13 C -0.072 4.072 14 C -0.111 4.111 15 N -0.153 5.153 16 N -0.380 5.380 17 C -0.434 4.434 18 H 0.088 0.912 19 C -0.295 4.295 20 N -0.628 5.628 21 Si 0.945 3.055 22 H -0.227 1.227 23 H -0.205 1.205 24 H -0.208 1.208 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.252 0.748 35 H 0.202 0.798 36 H 0.240 0.760 37 H 0.227 0.773 38 H 0.189 0.811 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.289 6.021 7.849 12.907 hybrid contribution 0.835 0.524 -0.481 1.097 sum 9.124 6.545 7.369 13.430 Atomic orbital electron populations 1.21714 0.95368 1.01687 1.00278 1.21609 0.96467 0.96463 0.98107 1.21854 1.01025 0.94679 1.02284 1.20629 0.89891 0.85742 0.96901 0.92901 1.21801 0.94740 0.95921 0.88225 1.45913 1.06576 1.51392 1.30353 1.17989 0.82808 0.80191 0.83849 1.90737 1.56055 1.50065 1.47528 1.21988 0.93157 1.00863 0.97205 1.23843 0.93640 0.93256 0.94659 1.68712 1.38815 1.06437 1.02990 1.24889 0.90582 0.94006 0.97773 1.24594 0.97321 0.94656 0.94532 1.68382 1.38987 1.05038 1.02906 1.42572 1.17493 1.03495 1.74452 1.20194 0.94038 0.94846 1.34315 0.91158 1.26854 1.08290 0.92023 1.02343 1.70991 1.11456 1.34197 1.46137 0.82718 0.71692 0.75029 0.76020 1.22713 1.20476 1.20833 0.93587 0.92876 0.93392 0.93086 0.92106 0.91846 0.92273 0.92546 0.89216 0.74818 0.79780 0.75962 0.77251 0.81119 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.26 71.98 0.59 -4.08 16 2 C -0.10 -3.46 2.69 -10.80 -0.03 -3.49 16 3 C -0.14 -3.56 8.84 71.98 0.64 -2.92 16 4 C 0.18 6.52 2.18 44.99 0.10 6.61 16 5 H 0.05 1.99 8.08 -2.38 -0.02 1.97 16 6 C 0.12 3.97 4.73 86.38 0.41 4.37 16 7 N -0.69 -24.52 5.38 -465.67 -2.50 -27.02 16 8 C 0.57 19.79 7.81 86.88 0.68 20.47 16 9 O -0.56 -21.36 16.35 -3.78 -0.06 -21.42 16 10 C 0.01 0.21 6.75 41.89 0.28 0.50 16 11 C 0.10 2.73 10.77 84.94 0.92 3.65 16 12 N -0.46 -10.28 10.49 -194.13 -2.04 -12.32 16 13 C 0.09 1.46 11.23 84.76 0.95 2.41 16 14 C 0.05 1.03 11.22 84.81 0.95 1.99 16 15 N -0.44 -12.63 9.71 -184.33 -1.79 -14.42 16 16 N -0.74 -34.15 4.44 -322.94 -1.43 -35.59 16 17 C -0.30 -15.57 7.57 84.03 0.64 -14.94 16 18 H 0.07 3.53 7.39 -2.91 -0.02 3.51 16 19 C -0.10 -5.75 5.50 84.86 0.47 -5.28 16 20 N -0.98 -59.59 13.70 21.65 0.30 -59.29 16 21 Si 1.12 50.52 29.92 68.60 2.05 52.58 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 2.06 6.01 -2.39 -0.01 2.05 16 28 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.06 1.44 6.55 -2.39 -0.02 1.42 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.71 6.71 -2.39 -0.02 2.69 16 34 H 0.41 15.75 7.49 -92.71 -0.69 15.06 16 35 H 0.19 4.49 7.65 -2.91 -0.02 4.47 16 36 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 37 H 0.21 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.36 18.06 6.63 -92.71 -0.61 17.45 16 39 H 0.24 14.79 6.77 -92.71 -0.63 14.16 16 Total: -1.00 -68.53 327.11 1.03 -67.51 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.09 Total: 40.70 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 6.59 Total: 9.28 kcal Atomic # 7 Polarization: -141.17 SS G_CDS: -7.47 Total: -148.64 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.58 kcal Total: -68.53 1.03 -67.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319897132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.245 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds