Wall clock time and date at job start Tue Mar 31 2020 00:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47252 * 2 1 4 4 C 1.52995 * 109.46679 * 120.00139 * 2 1 3 5 5 H 1.09000 * 109.47407 * 60.00536 * 4 2 1 6 6 C 1.53004 * 109.46708 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.46929 * 175.00245 * 6 4 2 8 8 C 1.34777 * 119.99858 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.48146 * 120.00016 * 180.27150 * 8 7 6 11 11 C 1.39447 * 120.09969 * 179.72132 * 10 8 7 12 12 N 1.32076 * 119.87341 * 180.02562 * 11 10 8 13 13 C 1.32130 * 120.07295 * 359.97438 * 12 11 10 14 14 C 1.38724 * 120.19736 * 0.02562 * 13 12 11 15 15 N 1.31802 * 120.12690 * 359.71821 * 14 13 12 16 16 N 1.46490 * 109.47407 * 299.99666 * 4 2 1 17 17 C 1.36935 * 120.00122 * 85.00627 * 16 4 2 18 18 H 1.08006 * 119.99947 * 359.97438 * 17 16 4 19 19 C 1.38818 * 120.00427 * 180.02562 * 17 16 4 20 20 N 1.31618 * 119.99544 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00168 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47267 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47196 * 119.99685 * 21 19 17 24 24 H 1.48502 * 109.47367 * 239.99738 * 21 19 17 25 25 H 1.08998 * 109.47102 * 299.99754 * 1 2 3 26 26 H 1.08998 * 109.47207 * 59.99592 * 1 2 3 27 27 H 1.08997 * 109.47613 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46703 * 239.99586 * 2 1 3 29 29 H 1.08994 * 109.46880 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46887 * 300.00058 * 3 2 1 31 31 H 1.08998 * 109.46866 * 60.00102 * 3 2 1 32 32 H 1.08998 * 109.47202 * 55.00089 * 6 4 2 33 33 H 1.08997 * 109.47419 * 294.99987 * 6 4 2 34 34 H 0.97001 * 120.00416 * 359.97438 * 7 6 4 35 35 H 1.07998 * 120.05725 * 359.97438 * 11 10 8 36 36 H 1.08010 * 119.90340 * 180.02562 * 13 12 11 37 37 H 1.08004 * 119.94112 * 180.02562 * 14 13 12 38 38 H 0.97003 * 120.00256 * 265.00303 * 16 4 2 39 39 H 0.97003 * 120.00096 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0583 -1.3057 2.5007 8 6 5.3834 -1.4097 2.7239 9 8 6.1730 -1.0197 1.8865 10 6 5.8772 -2.0056 3.9871 11 6 7.2478 -2.1196 4.2177 12 7 7.6831 -2.6520 5.3452 13 6 6.8219 -3.0754 6.2534 14 6 5.4578 -2.9635 6.0271 15 7 5.0147 -2.4288 4.9069 16 7 1.5517 -0.0307 2.4453 17 6 0.3101 -0.3211 2.9448 18 1 -0.3093 -1.0590 2.4566 19 6 -0.1528 0.3336 4.0779 20 7 0.6018 1.2332 4.6726 21 14 -1.8467 -0.0621 4.7587 22 1 -2.4897 -1.1002 3.9137 23 1 -1.7158 -0.5663 6.1493 24 1 -2.6814 1.1662 4.7540 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9337 0.3017 1.1592 33 1 3.9329 -1.3115 0.4071 34 1 3.4280 -1.6166 3.1692 35 1 7.9518 -1.7740 3.4752 36 1 7.1809 -3.5100 7.1747 37 1 4.7575 -3.3105 6.7725 38 1 2.1078 0.6322 2.8837 39 1 0.2783 1.6910 5.4642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319897133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:48 Heat of formation + Delta-G solvation = 18.048326 kcal Electronic energy + Delta-G solvation = -21669.546835 eV Core-core repulsion = 18419.577968 eV Total energy + Delta-G solvation = -3249.968867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25801 -39.16183 -37.30325 -34.64054 -33.74998 -32.90488 -31.79917 -30.17297 -28.13517 -26.35392 -25.43482 -24.60681 -23.58855 -22.18497 -20.55237 -18.95900 -17.98164 -17.65179 -17.18128 -16.81181 -15.59428 -15.49013 -15.10631 -14.86410 -14.31373 -14.15829 -13.91705 -13.37240 -13.16711 -13.05104 -12.83697 -12.24923 -11.93574 -11.77348 -11.38741 -11.32657 -11.03067 -10.93471 -10.80827 -10.59623 -10.26276 -10.16910 -10.10432 -9.89841 -9.57535 -9.47795 -9.18903 -8.92016 -8.66414 -7.01549 -5.80648 -3.09284 0.31478 0.93841 2.82186 3.25955 3.39512 3.46142 3.47843 3.76209 3.97980 4.05109 4.34239 4.54747 4.79207 5.02919 5.15420 5.35996 5.38668 5.43835 5.52318 5.73538 5.81532 5.88114 6.06229 6.14461 6.22121 6.33799 6.41605 6.55380 6.62975 6.68318 6.79947 6.87449 7.01410 7.05485 7.34157 7.48988 7.68131 7.87779 8.35903 8.40122 9.48603 10.03079 10.39060 11.41164 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.005525 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.253629 B = 5066.525925 C = 6568.333001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.054 0.946 6 C 0.108 3.892 7 N -0.686 5.686 8 C 0.568 3.432 9 O -0.544 6.544 10 C 0.037 3.963 11 C 0.103 3.897 12 N -0.443 5.443 13 C 0.065 3.935 14 C 0.053 3.947 15 N -0.402 5.402 16 N -0.717 5.717 17 C -0.234 4.234 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.928 5.928 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 H 0.088 0.912 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.421 0.579 35 H 0.182 0.818 36 H 0.174 0.826 37 H 0.177 0.823 38 H 0.385 0.615 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.928 -7.558 -1.108 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.072 0.928 6 C -0.016 4.016 7 N -0.336 5.336 8 C 0.350 3.650 9 O -0.422 6.422 10 C -0.104 4.104 11 C -0.057 4.057 12 N -0.157 5.157 13 C -0.096 4.096 14 C -0.110 4.110 15 N -0.120 5.120 16 N -0.359 5.359 17 C -0.365 4.365 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 H 0.106 0.894 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.260 0.740 35 H 0.199 0.801 36 H 0.191 0.809 37 H 0.194 0.806 38 H 0.219 0.781 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.275 -7.320 -1.707 11.938 hybrid contribution -1.185 -0.056 1.025 1.568 sum 8.090 -7.376 -0.682 10.969 Atomic orbital electron populations 1.21834 0.94984 1.00854 1.02092 1.21615 0.96832 0.96565 0.97853 1.21797 0.99669 0.96776 1.01690 1.20546 0.89096 0.96078 0.88608 0.92811 1.21892 0.96052 0.98679 0.84985 1.45893 1.06309 1.60004 1.21409 1.17639 0.83346 0.79321 0.84651 1.90767 1.55808 1.50307 1.45318 1.22335 0.92384 0.99823 0.95867 1.23807 0.94436 0.92777 0.94643 1.68593 1.38292 1.07523 1.01335 1.24075 0.91352 0.95358 0.98847 1.23914 0.95777 0.96043 0.95222 1.68468 1.38083 1.04510 1.00896 1.42414 1.18056 1.47407 1.28002 1.19225 0.92660 1.17912 1.06690 0.90904 1.24706 0.98205 0.99269 0.98483 1.69671 1.36684 1.29048 1.22210 0.86207 0.84382 0.77375 0.78747 1.20597 1.22022 1.22035 0.89353 0.95005 0.94133 0.93221 0.93656 0.94284 0.91229 0.90923 0.91566 0.74023 0.80147 0.80854 0.80568 0.78053 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.26 37.16 0.31 -2.18 16 2 C -0.11 -1.79 2.80 -90.62 -0.25 -2.05 16 3 C -0.14 -2.38 8.69 37.16 0.32 -2.05 16 4 C 0.17 3.04 2.34 -67.94 -0.16 2.88 16 5 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 6 C 0.11 1.82 5.02 -4.04 -0.02 1.80 16 7 N -0.69 -11.88 5.38 -61.15 -0.33 -12.21 16 8 C 0.57 9.73 7.81 -12.19 -0.10 9.63 16 9 O -0.54 -10.16 16.35 5.35 0.09 -10.08 16 10 C 0.04 0.57 6.75 -82.84 -0.56 0.01 16 11 C 0.10 1.38 10.77 -17.00 -0.18 1.20 16 12 N -0.44 -5.47 10.49 -12.71 -0.13 -5.60 16 13 C 0.06 0.64 11.23 -17.24 -0.19 0.44 16 14 C 0.05 0.58 11.22 -17.38 -0.20 0.39 16 15 N -0.40 -5.94 9.71 -9.61 -0.09 -6.04 16 16 N -0.72 -15.93 3.67 -53.43 -0.20 -16.13 16 17 C -0.23 -5.83 7.57 -15.06 -0.11 -5.94 16 18 H 0.07 1.79 7.39 -52.48 -0.39 1.40 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.75 16 21 Si 0.90 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H 0.09 1.85 6.01 -51.93 -0.31 1.54 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.71 6.32 -51.93 -0.33 0.38 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.36 7.60 -51.93 -0.39 0.96 16 32 H 0.07 1.28 6.18 -51.93 -0.32 0.96 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.42 7.75 7.49 -40.82 -0.31 7.44 16 35 H 0.18 2.19 7.65 -52.49 -0.40 1.79 16 36 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 38 H 0.39 9.47 7.80 -40.82 -0.32 9.16 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -29.66 327.17 -6.56 -36.22 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -5.28 Total: 14.53 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.24 Total: 3.75 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.03 Total: -65.72 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.66 -6.56 -36.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319897133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.268 kcal (2) G-P(sol) polarization free energy of solvation -29.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds