Wall clock time and date at job start Tue Mar 31 2020 00:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47252 * 2 1 4 4 C 1.52995 * 109.46679 * 120.00139 * 2 1 3 5 5 H 1.09000 * 109.47407 * 60.00536 * 4 2 1 6 6 C 1.53004 * 109.46708 * 179.97438 * 4 2 1 7 7 N 1.46504 * 109.46929 * 175.00245 * 6 4 2 8 8 C 1.34777 * 119.99858 * 180.02562 * 7 6 4 9 9 O 1.21523 * 119.99904 * 359.97438 * 8 7 6 10 10 C 1.48146 * 120.00016 * 180.27150 * 8 7 6 11 11 C 1.39447 * 120.09969 * 179.72132 * 10 8 7 12 12 N 1.32076 * 119.87341 * 180.02562 * 11 10 8 13 13 C 1.32130 * 120.07295 * 359.97438 * 12 11 10 14 14 C 1.38724 * 120.19736 * 0.02562 * 13 12 11 15 15 N 1.31802 * 120.12690 * 359.71821 * 14 13 12 16 16 N 1.46490 * 109.47407 * 299.99666 * 4 2 1 17 17 C 1.36935 * 120.00122 * 85.00627 * 16 4 2 18 18 H 1.08006 * 119.99947 * 359.97438 * 17 16 4 19 19 C 1.38818 * 120.00427 * 180.02562 * 17 16 4 20 20 N 1.31618 * 119.99544 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00168 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47267 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47196 * 119.99685 * 21 19 17 24 24 H 1.48502 * 109.47367 * 239.99738 * 21 19 17 25 25 H 1.08998 * 109.47102 * 299.99754 * 1 2 3 26 26 H 1.08998 * 109.47207 * 59.99592 * 1 2 3 27 27 H 1.08997 * 109.47613 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46703 * 239.99586 * 2 1 3 29 29 H 1.08994 * 109.46880 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46887 * 300.00058 * 3 2 1 31 31 H 1.08998 * 109.46866 * 60.00102 * 3 2 1 32 32 H 1.08998 * 109.47202 * 55.00089 * 6 4 2 33 33 H 1.08997 * 109.47419 * 294.99987 * 6 4 2 34 34 H 0.97001 * 120.00416 * 359.97438 * 7 6 4 35 35 H 1.07998 * 120.05725 * 359.97438 * 11 10 8 36 36 H 1.08010 * 119.90340 * 180.02562 * 13 12 11 37 37 H 1.08004 * 119.94112 * 180.02562 * 14 13 12 38 38 H 0.97003 * 120.00256 * 265.00303 * 16 4 2 39 39 H 0.97003 * 120.00096 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6766 -1.7490 1.2492 6 6 3.5700 -0.7218 1.2489 7 7 4.0583 -1.3057 2.5007 8 6 5.3834 -1.4097 2.7239 9 8 6.1730 -1.0197 1.8865 10 6 5.8772 -2.0056 3.9871 11 6 7.2478 -2.1196 4.2177 12 7 7.6831 -2.6520 5.3452 13 6 6.8219 -3.0754 6.2534 14 6 5.4578 -2.9635 6.0271 15 7 5.0147 -2.4288 4.9069 16 7 1.5517 -0.0307 2.4453 17 6 0.3101 -0.3211 2.9448 18 1 -0.3093 -1.0590 2.4566 19 6 -0.1528 0.3336 4.0779 20 7 0.6018 1.2332 4.6726 21 14 -1.8467 -0.0621 4.7587 22 1 -2.4897 -1.1002 3.9137 23 1 -1.7158 -0.5663 6.1493 24 1 -2.6814 1.1662 4.7540 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9337 0.3017 1.1592 33 1 3.9329 -1.3115 0.4071 34 1 3.4280 -1.6166 3.1692 35 1 7.9518 -1.7740 3.4752 36 1 7.1809 -3.5100 7.1747 37 1 4.7575 -3.3105 6.7725 38 1 2.1078 0.6322 2.8837 39 1 0.2783 1.6910 5.4642 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319897133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:48 Heat of formation + Delta-G solvation = -3.460905 kcal Electronic energy + Delta-G solvation = -21670.479545 eV Core-core repulsion = 18419.577968 eV Total energy + Delta-G solvation = -3250.901578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.26233 -40.47234 -38.80569 -35.75036 -35.06761 -34.69448 -32.79312 -31.91544 -29.64556 -27.75940 -26.60996 -25.69708 -25.24579 -23.60862 -21.84791 -20.37190 -19.41789 -18.93619 -18.60642 -17.76111 -16.94678 -16.84603 -16.46771 -16.04868 -15.95244 -15.40501 -15.22428 -15.02438 -14.63259 -14.49059 -13.88858 -13.77418 -13.40233 -12.91226 -12.81715 -12.76241 -12.66757 -12.41105 -12.39852 -12.14106 -11.91610 -11.88163 -11.51893 -11.33319 -11.16609 -10.82983 -10.55266 -10.18099 -10.02428 -8.91378 -7.83890 -5.09717 -0.67060 -0.01086 1.49761 1.52258 1.59616 1.63342 2.03748 2.62084 2.73155 2.96086 3.18527 3.39276 3.50224 3.78633 3.91204 3.95029 4.10104 4.28477 4.31914 4.36563 4.44089 4.52325 4.69177 4.74748 4.97207 4.99655 5.13051 5.23460 5.25962 5.29336 5.33292 5.49237 5.61220 5.65767 5.84966 6.06399 6.35896 6.40028 6.65993 7.04752 7.44275 8.16035 8.41003 9.39199 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.005525 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.253629 B = 5066.525925 C = 6568.333001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C -0.136 4.136 4 C 0.168 3.832 5 H 0.055 0.945 6 C 0.115 3.885 7 N -0.690 5.690 8 C 0.566 3.434 9 O -0.566 6.566 10 C 0.009 3.991 11 C 0.103 3.897 12 N -0.456 5.456 13 C 0.087 3.913 14 C 0.052 3.948 15 N -0.433 5.433 16 N -0.720 5.720 17 C -0.208 4.208 18 H 0.079 0.921 19 C -0.072 4.072 20 N -0.967 5.967 21 Si 0.956 3.044 22 H -0.267 1.267 23 H -0.300 1.300 24 H -0.304 1.304 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.416 0.584 35 H 0.185 0.815 36 H 0.223 0.777 37 H 0.210 0.790 38 H 0.372 0.628 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.319 -9.259 -1.260 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.193 4.193 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.009 4.009 7 N -0.339 5.339 8 C 0.351 3.649 9 O -0.446 6.446 10 C -0.130 4.130 11 C -0.055 4.055 12 N -0.170 5.170 13 C -0.075 4.075 14 C -0.111 4.111 15 N -0.151 5.151 16 N -0.360 5.360 17 C -0.340 4.340 18 H 0.096 0.904 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.228 1.228 24 H -0.232 1.232 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.253 0.747 35 H 0.202 0.798 36 H 0.239 0.761 37 H 0.227 0.773 38 H 0.204 0.796 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.670 -9.045 -1.939 13.382 hybrid contribution -1.249 0.374 1.091 1.700 sum 8.421 -8.671 -0.848 12.117 Atomic orbital electron populations 1.21752 0.95506 1.00876 1.01230 1.21574 0.96285 0.96603 0.98017 1.21718 1.00189 0.96564 1.00815 1.20702 0.89974 0.95686 0.87724 0.92663 1.21824 0.94878 0.98569 0.85634 1.45904 1.06477 1.60185 1.21365 1.17963 0.82922 0.78754 0.85277 1.90734 1.56121 1.51401 1.46371 1.22019 0.93098 1.02188 0.95710 1.23838 0.93724 0.92669 0.95312 1.68695 1.38855 1.08079 1.01413 1.24866 0.90637 0.92656 0.99299 1.24577 0.97250 0.94808 0.94496 1.68389 1.38953 1.05591 1.02178 1.42484 1.17117 1.47251 1.29193 1.19493 0.93108 1.16059 1.05384 0.90355 1.25310 1.01100 1.00286 0.99733 1.69816 1.38191 1.31012 1.22833 0.85310 0.81228 0.76837 0.77844 1.19146 1.22771 1.23160 0.93067 0.92987 0.93603 0.90069 0.92792 0.92437 0.94730 0.91836 0.89719 0.74695 0.79828 0.76095 0.77326 0.79597 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 8.26 71.98 0.59 -4.00 16 2 C -0.10 -3.27 2.80 -10.79 -0.03 -3.30 16 3 C -0.14 -4.38 8.69 71.98 0.63 -3.76 16 4 C 0.17 5.96 2.34 44.99 0.11 6.07 16 5 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 6 C 0.11 3.80 5.02 86.38 0.43 4.24 16 7 N -0.69 -24.12 5.38 -465.67 -2.51 -26.62 16 8 C 0.57 19.69 7.81 86.88 0.68 20.37 16 9 O -0.57 -21.42 16.35 -3.79 -0.06 -21.48 16 10 C 0.01 0.28 6.75 41.89 0.28 0.56 16 11 C 0.10 2.71 10.77 84.95 0.92 3.62 16 12 N -0.46 -10.37 10.49 -194.12 -2.04 -12.41 16 13 C 0.09 1.43 11.23 84.76 0.95 2.39 16 14 C 0.05 1.03 11.22 84.81 0.95 1.98 16 15 N -0.43 -12.54 9.71 -184.33 -1.79 -14.33 16 16 N -0.72 -32.31 3.67 -322.95 -1.19 -33.50 16 17 C -0.21 -10.41 7.57 84.04 0.64 -9.78 16 18 H 0.08 3.79 7.39 -2.91 -0.02 3.76 16 19 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 20 N -0.97 -56.74 13.06 21.65 0.28 -56.46 16 21 Si 0.96 44.56 29.55 68.60 2.03 46.59 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 25 H 0.05 2.11 6.01 -2.39 -0.01 2.10 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.63 6.32 -2.39 -0.02 1.62 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.35 7.60 -2.39 -0.02 1.33 16 32 H 0.06 2.23 6.18 -2.39 -0.01 2.22 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.42 15.53 7.49 -92.71 -0.69 14.84 16 35 H 0.18 4.50 7.65 -2.91 -0.02 4.48 16 36 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 37 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.37 18.81 7.80 -92.71 -0.72 18.09 16 39 H 0.24 14.22 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -65.59 327.17 1.01 -64.59 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -0.34 Total: 38.68 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.61 Total: 14.95 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -7.24 Total: -143.32 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.06 Total: -21.48 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.59 1.01 -64.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319897133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.125 kcal (2) G-P(sol) polarization free energy of solvation -65.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds