Wall clock time and date at job start Tue Mar 31 2020 00:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47371 * 2 1 4 4 C 1.52998 * 109.47221 * 239.99250 * 2 1 3 5 5 C 1.50703 * 109.46523 * 119.99469 * 2 1 3 6 6 C 1.38777 * 120.00168 * 75.00510 * 5 2 1 7 7 C 1.38611 * 118.03212 * 179.97438 * 6 5 2 8 8 C 1.39390 * 117.91184 * 359.97438 * 7 6 5 9 9 N 1.39437 * 120.14803 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99665 * 185.06783 * 9 8 7 11 11 O 1.21584 * 120.00509 * 354.91894 * 10 9 8 12 12 N 1.34779 * 120.00122 * 174.64565 * 10 9 8 13 13 C 1.46492 * 120.00434 * 180.27709 * 12 10 9 14 14 C 1.50701 * 109.47553 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99580 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00509 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00068 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99998 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47229 * 89.99607 * 18 16 14 20 20 H 1.48496 * 109.47343 * 209.99551 * 18 16 14 21 21 H 1.48501 * 109.46956 * 330.00151 * 18 16 14 22 22 N 1.32436 * 119.70146 * 0.25492 * 8 7 6 23 23 N 1.28352 * 122.08324 * 359.46491 * 22 8 7 24 24 H 1.09002 * 109.46833 * 300.00782 * 1 2 3 25 25 H 1.08998 * 109.46523 * 60.00511 * 1 2 3 26 26 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47266 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46280 * 299.99634 * 3 2 1 29 29 H 1.09000 * 109.47311 * 59.99195 * 3 2 1 30 30 H 1.09002 * 109.47014 * 300.00465 * 4 2 1 31 31 H 1.08998 * 109.46822 * 60.00230 * 4 2 1 32 32 H 1.08994 * 109.46963 * 180.02562 * 4 2 1 33 33 H 1.08002 * 120.98421 * 359.94929 * 6 5 2 34 34 H 1.08005 * 121.04366 * 180.02562 * 7 6 5 35 35 H 0.96996 * 120.00511 * 5.07029 * 9 8 7 36 36 H 0.97000 * 119.99687 * 0.27450 * 12 10 9 37 37 H 1.09010 * 109.47033 * 299.99595 * 13 12 10 38 38 H 1.08999 * 109.47475 * 59.99424 * 13 12 10 39 39 H 0.97008 * 119.99868 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.9703 -2.0946 1.3066 7 6 2.4441 -2.7057 2.4570 8 6 2.9540 -1.8906 3.4662 9 7 3.4424 -2.4561 4.6435 10 6 3.8399 -1.6626 5.6578 11 8 3.8600 -0.4555 5.5135 12 7 4.2099 -2.2068 6.8340 13 6 4.6362 -1.3441 7.9385 14 6 4.9934 -2.1938 9.1307 15 1 4.9108 -3.2691 9.0717 16 6 5.4258 -1.5987 10.2968 17 7 5.7370 -2.3403 11.3374 18 14 5.5694 0.2609 10.3988 19 1 4.2843 0.8313 10.8768 20 1 6.6542 0.6224 11.3463 21 1 5.8838 0.8075 9.0543 22 7 2.9674 -0.5762 3.3041 23 7 2.5318 -0.0168 2.2342 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7491 -1.2490 31 1 1.6768 -0.2076 -2.1391 32 1 3.1300 -0.7218 -1.2488 33 1 1.5646 -2.6785 0.4936 34 1 2.4196 -3.7798 2.5676 35 1 3.4961 -3.4204 4.7324 36 1 4.1939 -3.1698 6.9491 37 1 5.5065 -0.7641 7.6314 38 1 3.8243 -0.6675 8.2053 39 1 6.0416 -1.9216 12.1577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321060234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:47 Heat of formation + Delta-G solvation = 30.157194 kcal Electronic energy + Delta-G solvation = -20991.544136 eV Core-core repulsion = 17742.100348 eV Total energy + Delta-G solvation = -3249.443787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34378 -39.50179 -37.27186 -35.05782 -34.25129 -32.86557 -32.37919 -30.33711 -27.90847 -27.60561 -27.48268 -24.63564 -24.29557 -22.14361 -20.58985 -20.09064 -18.63823 -17.98160 -16.91449 -16.31864 -16.05883 -15.61911 -14.86957 -14.75420 -14.30844 -14.25983 -14.10895 -13.92182 -13.54057 -13.15477 -12.66703 -12.50475 -12.41839 -12.33291 -11.96958 -11.84962 -11.35965 -11.18706 -11.00835 -10.96857 -10.86448 -10.71034 -10.21354 -9.96337 -9.75328 -9.50031 -9.18895 -8.79499 -8.61486 -8.10715 -6.22246 -4.24862 0.80049 0.99729 2.66936 3.28997 3.35990 3.41539 3.45665 3.88018 3.94843 4.30621 4.34194 4.41345 4.47520 4.71872 4.75396 4.76776 4.92667 5.07701 5.13582 5.29809 5.37011 5.45580 5.49025 5.59160 5.68884 5.73564 5.77586 5.90623 6.02946 6.05133 6.27470 6.53753 6.63953 7.07576 7.10680 7.24049 7.40217 8.19826 8.51713 8.74736 8.91922 9.08646 9.37870 10.89482 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039514 B = 0.003207 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.443114 B = 8728.397645 C = 9234.407611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 C -0.133 4.133 4 C -0.141 4.141 5 C 0.035 3.965 6 C -0.087 4.087 7 C -0.159 4.159 8 C 0.322 3.678 9 N -0.666 5.666 10 C 0.680 3.320 11 O -0.537 6.537 12 N -0.715 5.715 13 C 0.238 3.762 14 C -0.544 4.544 15 H 0.080 0.920 16 C 0.079 3.921 17 N -0.892 5.892 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.259 1.259 22 N -0.224 5.224 23 N -0.205 5.205 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.412 0.588 36 H 0.393 0.607 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 -2.246 -25.078 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.011 4.011 3 C -0.190 4.190 4 C -0.199 4.199 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.192 4.192 8 C 0.083 3.917 9 N -0.316 5.316 10 C 0.379 3.621 11 O -0.408 6.408 12 N -0.368 5.368 13 C 0.116 3.884 14 C -0.582 4.582 15 H 0.098 0.902 16 C -0.125 4.125 17 N -0.530 5.530 18 Si 0.702 3.298 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.183 1.183 22 N -0.073 5.073 23 N -0.048 5.048 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.249 0.751 36 H 0.227 0.773 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.147 0.376 -24.136 25.814 hybrid contribution -0.194 -1.739 -0.139 1.755 sum -9.341 -1.363 -24.275 26.046 Atomic orbital electron populations 1.21887 0.93151 1.02044 1.02521 1.19355 0.95700 0.95993 0.90070 1.21732 1.01503 0.93765 1.02041 1.21946 1.01497 1.00102 0.96355 1.22676 0.99254 0.92009 0.97379 1.21984 0.96966 0.95123 0.97575 1.21825 1.01919 1.01505 0.93930 1.20019 0.92573 0.92280 0.86850 1.42817 1.65705 1.10229 1.12851 1.16243 0.79611 0.85722 0.80524 1.91043 1.57172 1.11525 1.81060 1.45454 1.69244 1.10871 1.11259 1.19444 0.94963 0.90607 0.83433 1.21057 1.46707 0.95109 0.95341 0.90248 1.24765 0.94021 0.98635 0.95110 1.69877 1.44127 1.35824 1.03124 0.86822 0.78471 0.85406 0.79075 1.19777 1.20885 1.18302 1.73832 1.13409 1.06804 1.13223 1.73091 1.04705 1.31278 0.95686 0.92170 0.91682 0.92529 0.92342 0.92662 0.91333 0.92351 0.91634 0.92288 0.83403 0.83308 0.75139 0.77345 0.95558 0.96026 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.41 37.16 0.31 -0.72 16 2 C -0.01 -0.08 0.88 -155.66 -0.14 -0.22 16 3 C -0.13 -1.29 7.82 37.16 0.29 -0.99 16 4 C -0.14 -0.92 8.09 37.16 0.30 -0.62 16 5 C 0.03 0.41 5.63 -82.39 -0.46 -0.05 16 6 C -0.09 -0.82 9.20 -39.24 -0.36 -1.19 16 7 C -0.16 -1.63 10.06 -39.02 -0.39 -2.02 16 8 C 0.32 4.87 7.51 -154.47 -1.16 3.71 16 9 N -0.67 -9.85 5.40 -15.69 -0.08 -9.94 16 10 C 0.68 13.67 8.52 -86.92 -0.74 12.93 16 11 O -0.54 -13.26 14.64 5.29 0.08 -13.18 16 12 N -0.71 -14.49 5.55 -66.42 -0.37 -14.86 16 13 C 0.24 5.89 4.50 -5.20 -0.02 5.87 16 14 C -0.54 -14.86 9.83 -34.44 -0.34 -15.20 16 15 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 17 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 22 N -0.22 -4.21 9.08 31.28 0.28 -3.93 16 23 N -0.21 -3.35 10.20 33.61 0.34 -3.01 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.77 7.87 -51.93 -0.41 0.37 16 30 H 0.06 0.30 6.76 -51.93 -0.35 -0.05 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.15 0.84 6.82 -52.49 -0.36 0.49 16 34 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.41 4.16 8.73 -40.82 -0.36 3.80 16 36 H 0.39 6.73 8.34 -40.82 -0.34 6.39 16 37 H 0.03 0.69 7.20 -51.92 -0.37 0.32 16 38 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -35.68 327.42 -7.06 -42.74 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.54 Total: 2.33 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.81 Total: 3.63 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.95 Total: -57.40 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.68 -7.06 -42.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321060234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.898 kcal (2) G-P(sol) polarization free energy of solvation -35.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds