Wall clock time and date at job start Tue Mar 31 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47371 * 2 1 4 4 C 1.52998 * 109.47221 * 239.99250 * 2 1 3 5 5 C 1.50703 * 109.46523 * 119.99469 * 2 1 3 6 6 C 1.38777 * 120.00168 * 75.00510 * 5 2 1 7 7 C 1.38611 * 118.03212 * 179.97438 * 6 5 2 8 8 C 1.39390 * 117.91184 * 359.97438 * 7 6 5 9 9 N 1.39437 * 120.14803 * 179.97438 * 8 7 6 10 10 C 1.34775 * 119.99665 * 185.06783 * 9 8 7 11 11 O 1.21584 * 120.00509 * 354.91894 * 10 9 8 12 12 N 1.34779 * 120.00122 * 174.64565 * 10 9 8 13 13 C 1.46492 * 120.00434 * 180.27709 * 12 10 9 14 14 C 1.50701 * 109.47553 * 179.97438 * 13 12 10 15 15 H 1.08007 * 119.99580 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00509 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00068 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99998 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47229 * 89.99607 * 18 16 14 20 20 H 1.48496 * 109.47343 * 209.99551 * 18 16 14 21 21 H 1.48501 * 109.46956 * 330.00151 * 18 16 14 22 22 N 1.32436 * 119.70146 * 0.25492 * 8 7 6 23 23 N 1.28352 * 122.08324 * 359.46491 * 22 8 7 24 24 H 1.09002 * 109.46833 * 300.00782 * 1 2 3 25 25 H 1.08998 * 109.46523 * 60.00511 * 1 2 3 26 26 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47266 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46280 * 299.99634 * 3 2 1 29 29 H 1.09000 * 109.47311 * 59.99195 * 3 2 1 30 30 H 1.09002 * 109.47014 * 300.00465 * 4 2 1 31 31 H 1.08998 * 109.46822 * 60.00230 * 4 2 1 32 32 H 1.08994 * 109.46963 * 180.02562 * 4 2 1 33 33 H 1.08002 * 120.98421 * 359.94929 * 6 5 2 34 34 H 1.08005 * 121.04366 * 180.02562 * 7 6 5 35 35 H 0.96996 * 120.00511 * 5.07029 * 9 8 7 36 36 H 0.97000 * 119.99687 * 0.27450 * 12 10 9 37 37 H 1.09010 * 109.47033 * 299.99595 * 13 12 10 38 38 H 1.08999 * 109.47475 * 59.99424 * 13 12 10 39 39 H 0.97008 * 119.99868 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7103 1.2306 6 6 1.9703 -2.0946 1.3066 7 6 2.4441 -2.7057 2.4570 8 6 2.9540 -1.8906 3.4662 9 7 3.4424 -2.4561 4.6435 10 6 3.8399 -1.6626 5.6578 11 8 3.8600 -0.4555 5.5135 12 7 4.2099 -2.2068 6.8340 13 6 4.6362 -1.3441 7.9385 14 6 4.9934 -2.1938 9.1307 15 1 4.9108 -3.2691 9.0717 16 6 5.4258 -1.5987 10.2968 17 7 5.7370 -2.3403 11.3374 18 14 5.5694 0.2609 10.3988 19 1 4.2843 0.8313 10.8768 20 1 6.6542 0.6224 11.3463 21 1 5.8838 0.8075 9.0543 22 7 2.9674 -0.5762 3.3041 23 7 2.5318 -0.0168 2.2342 24 1 -0.3633 0.5140 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9562 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 -1.7491 -1.2490 31 1 1.6768 -0.2076 -2.1391 32 1 3.1300 -0.7218 -1.2488 33 1 1.5646 -2.6785 0.4936 34 1 2.4196 -3.7798 2.5676 35 1 3.4961 -3.4204 4.7324 36 1 4.1939 -3.1698 6.9491 37 1 5.5065 -0.7641 7.6314 38 1 3.8243 -0.6675 8.2053 39 1 6.0416 -1.9216 12.1577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321060234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:43 Heat of formation + Delta-G solvation = 3.519947 kcal Electronic energy + Delta-G solvation = -20992.699214 eV Core-core repulsion = 17742.100348 eV Total energy + Delta-G solvation = -3250.598865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -42.38852 -40.93141 -38.14863 -36.43789 -35.97612 -34.45065 -33.76717 -31.52673 -29.68736 -28.34557 -28.09740 -25.67163 -25.41555 -23.92701 -22.12438 -20.90962 -20.14649 -19.17748 -18.55440 -17.67768 -16.97760 -16.93209 -16.59764 -15.94724 -15.93215 -15.15976 -15.02708 -14.91063 -14.82090 -14.45674 -14.26639 -14.17654 -13.22094 -13.10459 -13.05926 -12.80807 -12.75634 -12.51416 -12.35586 -11.95342 -11.87867 -11.81189 -11.79231 -11.66489 -11.17007 -11.06566 -10.92946 -10.29146 -10.13090 -9.57517 -8.41276 -6.47804 -0.06428 0.02994 1.31451 1.33473 1.41332 1.48389 2.04309 2.27599 2.71369 2.93684 2.95020 3.25683 3.56165 3.72019 3.75581 4.04971 4.09838 4.17597 4.36609 4.55130 4.72323 4.77444 4.82432 4.91904 4.95389 4.98880 5.01492 5.06512 5.08833 5.19678 5.22930 5.30759 5.43243 5.45309 5.50280 5.52496 5.83437 6.16503 6.53397 6.99444 7.17247 7.50150 7.95925 8.73153 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039514 B = 0.003207 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.443114 B = 8728.397645 C = 9234.407611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.011 4.011 3 C -0.133 4.133 4 C -0.137 4.137 5 C 0.038 3.962 6 C -0.078 4.078 7 C -0.136 4.136 8 C 0.293 3.707 9 N -0.647 5.647 10 C 0.683 3.317 11 O -0.588 6.588 12 N -0.711 5.711 13 C 0.251 3.749 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.031 3.969 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.266 1.266 20 H -0.271 1.271 21 H -0.263 1.263 22 N -0.292 5.292 23 N -0.256 5.256 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.200 0.800 34 H 0.199 0.801 35 H 0.435 0.565 36 H 0.409 0.591 37 H 0.011 0.989 38 H 0.009 0.991 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -3.942 -28.052 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.013 4.013 3 C -0.190 4.190 4 C -0.194 4.194 5 C -0.112 4.112 6 C -0.106 4.106 7 C -0.167 4.167 8 C 0.053 3.947 9 N -0.300 5.300 10 C 0.383 3.617 11 O -0.463 6.463 12 N -0.365 5.365 13 C 0.127 3.873 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.170 4.170 17 N -0.567 5.567 18 Si 0.757 3.243 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.188 1.188 22 N -0.138 5.138 23 N -0.095 5.095 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.217 0.783 34 H 0.216 0.784 35 H 0.276 0.724 36 H 0.245 0.755 37 H 0.029 0.971 38 H 0.027 0.973 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.574 -1.364 -27.151 29.169 hybrid contribution 0.167 -1.275 0.604 1.421 sum -10.407 -2.639 -26.547 28.636 Atomic orbital electron populations 1.21879 0.91689 1.03269 1.02412 1.19541 0.96718 0.95092 0.89945 1.21720 1.00346 0.95089 1.01857 1.21942 1.00847 1.01358 0.95302 1.23378 0.97046 0.93775 0.96977 1.22560 0.95464 0.94169 0.98440 1.22323 0.99002 1.03363 0.92040 1.20343 0.94199 0.92373 0.87824 1.42336 1.65096 1.10807 1.11726 1.16326 0.78983 0.85407 0.81033 1.91013 1.59112 1.14057 1.82092 1.45086 1.69507 1.11217 1.10727 1.19000 0.93916 0.90460 0.83915 1.21233 1.46011 0.94765 0.96183 0.91726 1.25501 0.93891 1.02668 0.94956 1.69963 1.45324 1.37609 1.03836 0.85928 0.78956 0.80555 0.78894 1.19077 1.19633 1.18796 1.73597 1.15710 1.09355 1.15156 1.72989 1.07242 1.32689 0.96624 0.94486 0.89656 0.90604 0.94129 0.90265 0.94019 0.89905 0.89891 0.93363 0.78346 0.78388 0.72368 0.75479 0.97093 0.97270 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.41 71.98 0.61 -1.02 16 2 C -0.01 -0.17 0.88 -52.92 -0.05 -0.22 16 3 C -0.13 -2.56 7.82 71.98 0.56 -2.00 16 4 C -0.14 -1.25 8.09 71.98 0.58 -0.66 16 5 C 0.04 0.84 5.63 42.69 0.24 1.08 16 6 C -0.08 -1.15 9.20 22.49 0.21 -0.94 16 7 C -0.14 -2.28 10.06 22.64 0.23 -2.05 16 8 C 0.29 8.60 7.51 132.97 1.00 9.60 16 9 N -0.65 -18.56 5.40 -321.83 -1.74 -20.30 16 10 C 0.68 27.88 8.52 179.05 1.53 29.41 16 11 O -0.59 -30.25 14.64 -3.98 -0.06 -30.30 16 12 N -0.71 -29.00 5.55 -482.30 -2.68 -31.68 16 13 C 0.25 12.67 4.50 85.64 0.38 13.05 16 14 C -0.54 -30.10 9.83 25.60 0.25 -29.85 16 15 H 0.06 3.69 7.84 -2.91 -0.02 3.67 16 16 C 0.03 1.74 5.47 84.65 0.46 2.20 16 17 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 18 Si 0.93 45.06 27.47 68.60 1.88 46.94 16 19 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.26 -12.86 6.54 99.48 0.65 -12.21 16 22 N -0.29 -11.36 9.08 -54.94 -0.50 -11.86 16 23 N -0.26 -8.62 10.20 -47.57 -0.49 -9.11 16 24 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.63 8.10 -2.39 -0.02 0.61 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 1.01 7.87 -2.39 -0.02 0.99 16 30 H 0.08 0.36 6.76 -2.39 -0.02 0.35 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.20 0.88 6.82 -2.91 -0.02 0.86 16 34 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.44 7.81 8.73 -92.71 -0.81 7.00 16 36 H 0.41 13.83 8.34 -92.71 -0.77 13.05 16 37 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 38 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 39 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -83.31 327.42 2.17 -81.15 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -0.56 Total: 11.74 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.00 Total: 18.60 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -5.10 Total: -128.12 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -83.31 2.17 -81.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321060234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.667 kcal (2) G-P(sol) polarization free energy of solvation -83.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds