Wall clock time and date at job start Mon Mar 30 2020 23:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30506 * 125.64820 * 2 1 4 4 C 1.34125 * 109.25420 * 180.29188 * 3 2 1 5 5 C 1.34679 * 108.02003 * 359.72584 * 4 3 2 6 6 N 1.35040 * 125.64864 * 179.82429 * 2 1 3 7 7 C 1.46495 * 126.40078 * 359.97438 * 6 2 1 8 8 C 1.50696 * 109.47240 * 84.71350 * 7 6 2 9 9 O 1.21282 * 120.00113 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00394 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00403 * 180.02562 * 10 8 7 12 12 C 1.50695 * 109.47479 * 179.97438 * 11 10 8 13 13 C 1.31005 * 120.00455 * 127.15179 * 12 11 10 14 14 C 1.50697 * 119.99510 * 7.56015 * 13 12 11 15 15 N 1.46505 * 109.47181 * 127.00481 * 14 13 12 16 16 C 1.36938 * 120.00448 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99649 * 0.02562 * 16 15 14 18 18 C 1.38806 * 120.00185 * 179.97438 * 16 15 14 19 19 N 1.31625 * 120.00077 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46915 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46839 * 120.00424 * 20 18 16 23 23 H 1.48495 * 109.47262 * 240.00583 * 20 18 16 24 24 H 1.08999 * 109.47038 * 270.17421 * 1 2 3 25 25 H 1.08999 * 109.47383 * 30.17572 * 1 2 3 26 26 H 1.08994 * 109.47094 * 150.17671 * 1 2 3 27 27 H 1.07997 * 125.99227 * 179.72510 * 4 3 2 28 28 H 1.07995 * 126.59129 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46907 * 324.71307 * 7 6 2 30 30 H 1.08995 * 109.47558 * 204.71598 * 7 6 2 31 31 H 0.97002 * 120.00091 * 359.97438 * 10 8 7 32 32 H 1.09007 * 109.47163 * 299.99366 * 11 10 8 33 33 H 1.09002 * 109.47508 * 59.99431 * 11 10 8 34 34 H 1.08001 * 119.99986 * 307.15440 * 12 11 10 35 35 H 1.07998 * 120.00449 * 187.55984 * 13 12 11 36 36 H 1.08997 * 109.47414 * 247.00127 * 14 13 12 37 37 H 1.08999 * 109.47299 * 7.00555 * 14 13 12 38 38 H 0.97005 * 119.99864 * 359.97438 * 15 14 13 39 39 H 0.97000 * 120.00046 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0065 5 6 3.5926 -0.6643 -0.0045 6 7 2.2940 -1.0973 0.0034 7 6 1.8425 -2.4910 0.0082 8 6 1.5627 -2.9332 -1.4050 9 8 1.7249 -2.1605 -2.3256 10 7 1.1321 -4.1874 -1.6459 11 6 0.8606 -4.6175 -3.0197 12 6 0.3960 -6.0511 -3.0148 13 6 -0.7225 -6.3793 -3.6127 14 6 -1.4567 -5.3624 -4.4481 15 7 -1.7113 -5.9168 -5.7801 16 6 -2.3708 -5.1687 -6.7185 17 1 -2.7029 -4.1698 -6.4768 18 6 -2.6115 -5.6938 -7.9807 19 7 -2.2063 -6.9110 -8.2754 20 14 -3.5105 -4.6731 -9.2611 21 1 -3.8568 -3.3491 -8.6845 22 1 -2.6357 -4.4831 -10.4459 23 1 -4.7531 -5.3754 -9.6707 24 1 -0.3633 0.0031 1.0277 25 1 -0.3634 0.8884 -0.5165 26 1 -0.3633 -0.8915 -0.5111 27 1 4.4098 1.3411 -0.0122 28 1 4.4776 -1.2832 -0.0087 29 1 0.9328 -2.5761 0.6025 30 1 2.6187 -3.1229 0.4396 31 1 1.0027 -4.8056 -0.9097 32 1 0.0847 -3.9853 -3.4518 33 1 1.7707 -4.5329 -3.6136 34 1 0.9852 -6.8079 -2.5184 35 1 -1.1183 -7.3785 -3.5070 36 1 -2.4047 -5.1157 -3.9700 37 1 -0.8505 -4.4612 -4.5394 38 1 -1.4127 -6.8138 -5.9973 39 1 -2.3749 -7.2781 -9.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321402429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:39 Heat of formation + Delta-G solvation = 65.529755 kcal Electronic energy + Delta-G solvation = -20494.622293 eV Core-core repulsion = 17246.712375 eV Total energy + Delta-G solvation = -3247.909918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31357 -39.79931 -36.73501 -34.67078 -34.22272 -32.94446 -31.89673 -30.56764 -28.72183 -27.00773 -26.17938 -24.80784 -22.55060 -21.63350 -21.20432 -20.01714 -18.92369 -17.62637 -17.45059 -16.81731 -16.25487 -15.90236 -15.34564 -14.88418 -14.54539 -14.31882 -13.99477 -13.82949 -13.55133 -13.26226 -13.17375 -12.95873 -12.81257 -12.68576 -12.52246 -12.35845 -11.83190 -11.01203 -10.84118 -10.60037 -10.50905 -10.11983 -10.04886 -9.84177 -9.70031 -9.35340 -9.11297 -8.70973 -8.47020 -6.97256 -5.81160 -3.10793 1.72722 2.14320 2.24881 2.44481 3.03455 3.17325 3.42213 3.48349 3.50460 4.22716 4.31121 4.35098 4.51155 4.58027 4.58997 4.90510 5.10124 5.17238 5.26868 5.31527 5.51716 5.56310 5.58236 5.71690 5.75938 5.86802 6.07341 6.08029 6.17747 6.43660 6.47972 6.60246 6.76736 6.93142 7.03360 7.21681 7.66907 7.89196 7.96899 8.37129 9.48781 10.03601 10.38751 11.41609 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.002948 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.789628 B = 9495.239543 C =10229.881246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.221 3.779 3 N -0.493 5.493 4 C -0.026 4.026 5 C -0.053 4.053 6 N -0.443 5.443 7 C 0.086 3.914 8 C 0.489 3.511 9 O -0.516 6.516 10 N -0.718 5.718 11 C 0.141 3.859 12 C -0.203 4.203 13 C -0.105 4.105 14 C 0.161 3.839 15 N -0.728 5.728 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.169 0.831 28 H 0.172 0.828 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.400 0.600 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.029 0.971 37 H 0.035 0.965 38 H 0.385 0.615 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 5.242 22.752 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.041 4.041 3 N -0.212 5.212 4 C -0.173 4.173 5 C -0.185 4.185 6 N -0.127 5.127 7 C -0.042 4.042 8 C 0.272 3.728 9 O -0.390 6.390 10 N -0.371 5.371 11 C 0.019 3.981 12 C -0.222 4.222 13 C -0.124 4.124 14 C 0.034 3.966 15 N -0.372 5.372 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.740 3.260 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.218 0.782 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.209 6.642 21.979 24.739 hybrid contribution 0.075 -1.268 -0.592 1.401 sum 9.284 5.374 21.387 23.927 Atomic orbital electron populations 1.20200 0.85047 1.04482 1.03139 1.23272 0.95657 0.81092 1.04095 1.70254 1.02324 1.28046 1.20554 1.22236 0.94797 0.92693 1.07606 1.22621 0.86643 0.96985 1.12241 1.44839 1.06831 1.05811 1.55200 1.21667 1.04185 0.82038 0.96274 1.20702 0.78403 0.82642 0.91062 1.90839 1.50387 1.52565 1.45231 1.45978 1.67883 1.12824 1.10372 1.20605 1.01937 0.93881 0.81641 1.22556 0.97904 0.95811 1.05925 1.23332 0.94355 1.00612 0.94141 1.20013 0.96301 0.93703 0.86539 1.42275 1.69285 1.17678 1.07967 1.19288 1.28571 0.97431 0.92003 0.90987 1.24765 1.01625 0.96758 0.97752 1.69676 1.51739 1.15294 1.21409 0.86085 0.79034 0.79237 0.81671 1.20426 1.21741 1.21775 0.90184 0.88924 0.90966 0.81339 0.81028 0.86025 0.85973 0.76552 0.89108 0.90966 0.86964 0.86768 0.95368 0.94763 0.78151 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.04 36.01 0.36 -0.28 16 2 C 0.22 2.70 7.88 -155.41 -1.23 1.48 16 3 N -0.49 -6.97 11.25 -10.81 -0.12 -7.09 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 C -0.05 -0.55 11.58 -16.56 -0.19 -0.74 16 6 N -0.44 -4.62 2.24 -115.19 -0.26 -4.88 16 7 C 0.09 0.58 6.15 -5.20 -0.03 0.55 16 8 C 0.49 5.25 7.90 -10.99 -0.09 5.17 16 9 O -0.52 -8.47 16.42 5.56 0.09 -8.38 16 10 N -0.72 -6.57 5.55 -61.48 -0.34 -6.91 16 11 C 0.14 1.81 5.76 -5.20 -0.03 1.78 16 12 C -0.20 -2.47 9.63 -36.03 -0.35 -2.81 16 13 C -0.10 -1.59 9.63 -36.03 -0.35 -1.93 16 14 C 0.16 3.16 6.35 -5.19 -0.03 3.13 16 15 N -0.73 -18.45 5.59 -61.09 -0.34 -18.79 16 16 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 17 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 20 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 27 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 0.47 7.94 -51.93 -0.41 0.06 16 30 H 0.12 0.42 8.13 -51.93 -0.42 0.00 16 31 H 0.40 2.18 8.46 -40.82 -0.35 1.83 16 32 H 0.09 1.40 5.30 -51.92 -0.28 1.12 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.69 5.29 -51.93 -0.27 0.42 16 38 H 0.38 10.20 7.66 -40.82 -0.31 9.89 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -37.31 338.83 -7.93 -45.24 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.38 Total: 7.34 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.39 Total: -1.64 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.34 Total: -65.21 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -37.31 -7.93 -45.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321402429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.775 kcal (2) G-P(sol) polarization free energy of solvation -37.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds